NNGGACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCATGTGATTGAGGGCTCCTGGAACTTCTGTTTACACCACA
CACACACACACACACACACACACACACACACACACACTCACACACACACA
CACACACACACACTCACACACAGTTTCTCAGCTCTGGGAGCATAGACATG
CACCACACACACAGCAAAGCAGCATACTTTTTAAGGTTTTCCTTTTTAGG
CTCATAAAACTTTGATTAAGAAGAAATAATATTATATTGTTTTCCTGAAT
TGCTGCTTCCATTAAAGTCTCTTTAAAGGGCTGGAGAGATGAATCTGGGG
ATAAGAACATGTCTGCTTTTCCAAAGGAACCGAGCTTGATTCTCAGCACC
CATACAGGTGGCTCACACCACCTGTAACTACCACTCTGGGGATCCCACGC
CTGTGTCCTCCATGGGCTCCATTACACAGATGCACATAGCACACGTGTAT
AACATTTAAAAAAATATGCCTGAGTAGGGGGCTGGAGAGGATGCTTAGAT
TTTAAGAGAGTGCCCTGCTCTTACAGAGGAACTGAGTTCAGTTCCTAGCC
CCCACATCAGAAGGTTTGCACCTGACTGTAATGCCAGCCCCAGTGGGCAC
TTATACTCATGTGCACATACATGCACAGAGACACGCATATACACATCAAT
AATCCTCTTTTTAAAGTACTGTTTGTAGTCCAGTGAGATGGTTCAGCAGG

NNNAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCTTGAAATAGAAAGAC
CCACCCATTTTGGGTACCATTCCCTATGCAGGGGATCCTGAACTTTATAA
GAATGGAAACTGTGAGCTGAATGTAAGCATGCATTCATTCATTCACTCTT
CTCTGACACTTGACTGTGGATGCAATATGACCAGTGAGTTCACGTTCTTG
CTGCTTTGACTTCCTCATCCAGCGAAAATGGACTATGCTTAAACTTTGAA
GTAAGGGGTTCCCGAATTCCACCAAGACTGGTCTTTGCAGGTGAGAGTGT
GGACTGCAGAAGCTAACAGCTTCTGGGACAGGCAGGAGCCACAGAGCTTC
TGGGGCAGACCGTGTTTTGGGCTCCAGACACCCAGGCACCTTCCCTGCCA
GAGGAGAGGTATCTGACCGCCCTGAGGACTTTGCCACAGCATCTGGGCGA
GACATCTTGGTTCCCAGATCCCGCAGAGGCTACTATGCACAGGTGAGAGT
GTGGACTACAGAAGCTACACAGATTCTGCCACAAGCCCTGTTTTGGGTCT
TCATCTTCTGCCAGGAGGCAGGTCCGAACACCATATATCTGTGCACCTTC
CCTGCAAGAGGAGAGCTTGCCTGTAGAGAGTACTCTAACCACTAAAACTC
AGGAGAGATCTAGTCTCTCAGGTCTGCTGATAGAGGCTAACAGACTCACG
AGAGG

Query= MSMg01no544_b12.b1 MSMg01no544_b12.b1 CHROMAT_FILE:
MSMg01no544_b12.b1 PHD_FILE: MSMg01no544_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:39 2005
         (590 letters)



>mm_chr3_63569860_63570849
          Length = 990

 Score = 1106 bits (572), Expect = 0.0
 Identities = 582/586 (99%), Gaps = 2/586 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatgtgattgagggctcctggaacttctgtttacaccacacacacacacacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaattctcatgtgattgagggctcctggaacttctgtttacaccacacacacacacacac 536

                                                                       
Query: 65  acacacacacacacacacacacactcacacacacacacacacacacacactcacacacag 124
           |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||
Sbjct: 535 acacacacacacacacacactca--cacacacacacacacacacacacactcacacacag 478

                                                                       
Query: 125 tttctcagctctgggagcatagacatgcaccacacacacagcaaagcagcatacttttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tttctcagctctgggagcatagacatgcaccacacacacagcaaagcagcatacttttta 418

                                                                       
Query: 185 aggttttcctttttaggctcataaaactttgattaagaagaaataatattatattgtttt 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 417 aggttttcctttttaggctcataaaactttgattaagacgaaataatattatattgtttt 358

                                                                       
Query: 245 cctgaattgctgcttccattaaagtctctttaaagggctggagagatgaatctggggata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cctgaattgctgcttccattaaagtctctttaaagggctggagagatgaatctggggata 298

                                                                       
Query: 305 agaacatgtctgcttttccaaaggaaccgagcttgattctcagcacccatacaggtggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agaacatgtctgcttttccaaaggaaccgagcttgattctcagcacccatacaggtggct 238

                                                                       
Query: 365 cacaccacctgtaactaccactctggggatcccacgcctgtgtcctccatgggctccatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cacaccacctgtaactaccactctggggatcccacgcctgtgtcctccatgggctccatt 178

                                                                       
Query: 425 acacagatgcacatagcacacgtgtataacatttaaaaaaatatgcctgagtagggggct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 acacagatgcacatagcacacgtgtataacatttaaaaaaatatgcctgagtagggggct 118

                                                                       
Query: 485 ggagaggatgcttagattttaagagagtgccctgctcttacagaggaactgagttcagtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ggagaggatgcttagattttaagagagtgccctgctcttacagaggaactgagttcagtt 58

                                                         
Query: 545 cctagcccccacatcagaaggtttgcacctgactgtaatgccagcc 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  cctagcccccacatcagaaggtttgcacctgactgtaatgccagcc 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)