Query= MSMg01no544_c07.b1 MSMg01no544_c07.b1 CHROMAT_FILE:
MSMg01no544_c07.b1 PHD_FILE: MSMg01no544_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:43 2005
(513 letters)
>mm_chr3_51883674_51884586
Length = 913
Score = 888 bits (459), Expect = 0.0
Identities = 495/507 (97%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 7 gaattccctgcaaccctgctccaatggcaccagaagaaaactttactgagtccccaagct 66
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 207 gaattccctgcaaccctgttccaatggcaccagaagaaaactttcctgagtccccaagct 266
Query: 67 gttagtttcttgctgggaccagtaccagaggtaactgtatacacttagtcacacagactc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gttagtttcttgctgggaccagtaccagaggtaactgtatacacttagtcacacagactc 326
Query: 127 aggagcaatgtcgctgggttctaccacctatgagccaggacaagcaactggaatgctctg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggagcaatgtcgctgggttctaccacctatgagccaggacaagcaactggaatgctctg 386
Query: 187 tgacccagtaccctcatttctgaaatggaaatgataattacagcagtcacagggcaatgc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgacccagtaccctcatttctgaaatggaaatgataattacagcagtcacagggcaatgc 446
Query: 247 tgtaaaaggaaaaggacactccttacggagtactacaaacagtgtctggcgtgtgtgtgg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgtaaaaggaaaaggacactccttacggagtactacaaacagtgtctggcgtgtgtgtgg 506
Query: 307 actctggaaacgtgagaggtcaatgtggtccagtacctttttccatggctaggatcttag 366
|||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct: 507 actccggaaacgtgagcggtcaatgtgctc-agtacctttttccatggctaggatcttag 565
Query: 367 gaatccatcccttccaggaccacagtgattgctagtcaacacctggatactgcgcacacc 426
|||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct: 566 gaatccatcccttccaggaccacagtgattgctactcaacacctggatgctgtgcacacc 625
Query: 427 aactgccttgctcacccacactccagcctccagatcaagccaacatcctacatggaggca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aactgccttgctcacccacactccagcctccagatcaagccaacatcctacatggaggca 685
Query: 487 actgctcagtcatggtactctggagag 513
|||||||| |||||| | |||||||||
Sbjct: 686 actgctcaatcatggcattctggagag 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_c07.g1 MSMg01no544_c07.g1 CHROMAT_FILE:
MSMg01no544_c07.g1 PHD_FILE: MSMg01no544_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:43 2005
(492 letters)
>mm_chr3_52020988_52021879
Length = 892
Score = 576 bits (298), Expect = e-168
Identities = 304/306 (99%)
Strand = Plus / Minus
Query: 187 agaggtcagaaaaagatcccctgggactggagttacagatggttgtgagctgccacgtgg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 agaggtcagaaaaagatcccctgggactggagttacagatggttgtgagctgccacgtgg 833
Query: 247 gtgctgggtgggtgctgggtaggtgctttctgactgcagtgatactgtgcctagcttcct 306
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 832 gtgctgggtgggtgctgggtaggtgctttctgactgcagtgatactttgcctagcttcct 773
Query: 307 taatgtcctgccagcatgcccccacccatgatgaactataccctcatattataagccaag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 taatgtcctgccagcatgcccccacccatgatgaactataccctcatattataagccaag 713
Query: 367 ataaacactactcctgcctttggcatagctttgagaaaaccaatgagtagccttcgctaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ataaacactactcctgcctttggcatagctttgagaaaaccaatgagtagccttcgctaa 653
Query: 427 gttgcttttggtgagtgatttgatgacatcagtgaaaagagaaagaagtacccacatttc 486
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gttgcttttggtgagtgatttaatgacatcagtgaaaagagaaagaagtacccacatttc 593
Query: 487 acagca 492
||||||
Sbjct: 592 acagca 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
