Query= MSMg01no544_d11.b1 MSMg01no544_d11.b1 CHROMAT_FILE:
MSMg01no544_d11.b1 PHD_FILE: MSMg01no544_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:48 2005
(434 letters)
>mm_chr3_77589902_77590735
Length = 834
Score = 725 bits (375), Expect = 0.0
Identities = 392/405 (96%), Gaps = 12/405 (2%)
Strand = Plus / Minus
Query: 9 ggaattctgggctgtgaacagttaccagggaaaacaaaaataatgagcacaaaatggctt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggaattctgggctgtgaacagttaccagggaaaacaaaaataatgagcacaaaatggctt 402
Query: 69 ctctattaaaatctttaacactttctagaaacccatattaatagtacagacagtgtgaaa 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctctattaaaatctttaacactttctagaaacccatattaatagtacagacagtgtgaaa 342
Query: 129 tgagtctttctcctcaagccagccttacacaatagttcctattgtatctactcagaagta 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgagtctttctcctcaagccagccttacacaatagttcctattgtatctactcagaagta 282
Query: 189 tgctgaaatgcagacatgaagtaattcacagttgctgacccatcttagtgaaggcctatt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgctgaaatgcagacatgaagtaattcacagttgctgacccatcttagtgaaggcctatt 222
Query: 249 tatgaggacgtgtacacacacacacacacacacacacacacacacaaactcacacacatt 308
|||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 221 tatgaggacgtgtacacacacacacacacacaca------------aactcacagacatt 174
Query: 309 tatttttaaaataaaataaactcaacacttcaggcaaaagaaatgagttatattcaccaa 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tatttttaaaataaaataaactcaacacttcaggcaaaagaaatgagttatattcaccaa 114
Query: 369 atttcatatatgcatagtgtgtgtgtgtgtgtgtgtgtgtgtgtg 413
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 atttcatatatgcatagtgtgtgtgtgtgtgtgtgtgtgtgtgtg 69
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 263 cacacacacacacacacacacacacacac 291
|||||||||||||||||||||||||||||
Sbjct: 69 cacacacacacacacacacacacacacac 97
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 265 cacacacacacacacacacacacacacac 293
|||||||||||||||||||||||||||||
Sbjct: 69 cacacacacacacacacacacacacacac 97
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 267 cacacacacacacacacacacacacaca 294
||||||||||||||||||||||||||||
Sbjct: 69 cacacacacacacacacacacacacaca 96
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 262 acacacacacacacacacacacacacac 289
||||||||||||||||||||||||||||
Sbjct: 70 acacacacacacacacacacacacacac 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 5
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_d11.g1 MSMg01no544_d11.g1 CHROMAT_FILE:
MSMg01no544_d11.g1 PHD_FILE: MSMg01no544_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:48 2005
(665 letters)
>mm_chr3_77429296_77430358
Length = 1063
Score = 1239 bits (641), Expect = 0.0
Identities = 659/665 (99%), Gaps = 2/665 (0%)
Strand = Plus / Plus
Query: 1 agcttcatttttcatgcacagtcagtaagaaatcttgagcagctagaaattagagaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcttcatttttcatgcacagtcagtaagaaatcttgagcagctagaaattagagaaaag 260
Query: 61 aaaatggatcatataaaagtagaagtggtaaatttatataccagaactacaacaaaattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatggatcatataaaagtagaagtggtaaatttatataccagaactacaacaaaattg 320
Query: 121 ctgatcattgagtttaatttttatgactgagtgaacatatttgcatacattttatttgtt 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatcattgagtttaagttttatgactgagtgaacatatttgcatacattttatttgtt 380
Query: 181 tttttgccctgtcatttatgtaaaatttacaatgcatgatgaaacttaccttttatatcc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttt-gccctgtcatttatgtaaaatttacaatgcatgatgaaacttaccttttatatcc 439
Query: 241 aaacttacattattatgtattatttttaaaacacacctaatattttgtgaatattcaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaacttacattattatgtattatttttaaaacacacctaatattttgtgaatattcaatt 499
Query: 301 atccatttacatatgtgcatcattaaaatttgctttactatattctcttggtacaacaat 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 a-ccatttacatatgtgcatcattaaaatttgctttactatattctcttggtacaacaat 558
Query: 361 tcttaaataatttaataacaaggaaattaattagggaaagtaaagaagacataaaaatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcttaaataatttaataacaaggaaattaattagggaaagtaaagaagacataaaaatag 618
Query: 421 atgagactgtttcaagttagatatgcaaaatactttaagggtaatttactaagtaatatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atgagactgtttcaagttagatatgcaaaatactttaagggtaatttactaagtaatatt 678
Query: 481 ccttaaaaccatgttacaaaatatgcagtgcaccagagcaatcacctgacagggctaagt 540
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 679 ccttaaaaccatgttacaaaatattcagtgcaccaaagcaatcacctgacagggctaagt 738
Query: 541 tataagctttcctgtaccttcatggcatgaattaaacatgatagtacccatatttgcctg 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 739 tataagctttcctgtaccttcatggcatgaattacacatgatagtacccatatttgcctg 798
Query: 601 ttagacagattatacattcctttgaaatttgtatccctataattttaagatatgttcatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttagacagattatacattcctttgaaatttgtatccctataattttaagatatgttcatt 858
Query: 661 agcac 665
|||||
Sbjct: 859 agcac 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1063
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1053
Effective search space: 689715
Effective search space used: 689715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
