Query= MSMg01no544_l16.b1 MSMg01no544_l16.b1 CHROMAT_FILE:
MSMg01no544_l16.b1 PHD_FILE: MSMg01no544_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:29 2005
(657 letters)
>mm_chr3_131743599_131744651
Length = 1053
Score = 1189 bits (615), Expect = 0.0
Identities = 642/653 (98%), Gaps = 4/653 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtctcttctaggttagctacaacttccaagctggtgaggtcaggcaattgtag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaattcagtctcttctaggttagctacaacttccaagctggtgaggtcaggcaattgtag 794
Query: 65 aaataaagatgattaaatacatcccctggagatgctcatacatacagcatacaatatgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aaataaagatgattaaatacatcccctggagatgctcatacatacagcatacaatatgtg 734
Query: 125 ccgccacatttgagtttggacacaaatgtccccagtaatggtggctaaaaataaagtgtt 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctgccacatttgagtttggacacaaatgtccccagtaatggtggctaaaaataaagtgtt 674
Query: 185 atatcttggtcgacttgggaatcgaggatacaatgccagactccacaggattccaaatca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatcttggtcgacttgggaatcgaggatacaatgccagactccacaggattccaaatca 614
Query: 245 tcttctgtatatatacatgtcggacttcaaagacttttgtgacatagatgaaccttagtg 304
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 613 tcttctg----tatacatgtcggacttcaaagacctttgtgacatagatgaaccttagtg 558
Query: 305 gttattaaggatctggaaagtatggttataaatttgcttagtgcatagtgagcctgaata 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 557 gttattaaggatctggaaagtatggttataagtttgcttagtgcatagtgagcctgaata 498
Query: 365 ctactcgatcctgttaccctgtgatcctcacaatttggttcttaacacataggaatttga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctactcgatcctgttaccctgtgatcctcacaatttggttcttaacacataggaatttga 438
Query: 425 agccactcatcctgcctaaggaacaacacgtgtttctatcaactgtgtttaaattgattt 484
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 437 agctactcatcctgcctaaggaacaacatgtgtttctatcaactgtgtttaaattgattt 378
Query: 485 taacagatataaatgagcacaaatattttgaggaataaatttagatatgaggacaaaaat 544
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taacagatataaatgagcacggatattttgaggaataaatttagatatgaggacaaaaat 318
Query: 545 gtgcatctcatatgtgatgtttgccttagcttacacgattgactgtgtcctgccttcatc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgcatctcatatgtgatgtttgccttagcttacacgattgactgtgtcctgccttcatc 258
Query: 605 tatgatgagctaatacaaaagacctcatcacatacgtgcgagccattgaccca 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tatgatgagctaatacaaaagacctcatcacatacgtgcgagccattgaccca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1053
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1043
Effective search space: 674821
Effective search space used: 674821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_l16.g1 MSMg01no544_l16.g1 CHROMAT_FILE:
MSMg01no544_l16.g1 PHD_FILE: MSMg01no544_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:29 2005
(420 letters)
>mm_chr3_131566612_131567431
Length = 820
Score = 741 bits (383), Expect = 0.0
Identities = 410/419 (97%), Gaps = 3/419 (0%)
Strand = Plus / Plus
Query: 1 taaactgggttcaatctagaattttaaaatgtggaatgtaaataaattaattaaatgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taaactgggttcaatctagaattttaaaatgtggaatgtaaataaattaattaaatgtaa 261
Query: 61 aaataattaattaaaaaaaggtatcattttaaaagctatattgtagctttaagtaaaatt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaataattaattaaaaaa-ggtatcattttaaaagctatattgtagctttaagtaaaatt 320
Query: 121 gttacaggtagctcttcaaaataatatagtagtacttgcttgaatgacagcatatcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttacaggtagctcttcaaaataatatagtagtacttgcttgaatgacagcatatcagtg 380
Query: 181 tgaaagactccaaaaggagcccctctctcaggcctcaggacaatagcggacacccaagaa 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaagactccgaaaggagcccctctctcaggcctcaggacaatagcggacacccaagaa 440
Query: 241 ctcacgacagtccgagcttgttgcaaaccacatgaggctttattcggggaaagccagagc 300
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ctcacgacagaccgagcttgttgcaaaccacgtgaggctttattcggggaaagccagagc 500
Query: 301 tctggggacgactcatatcccactcaggggtagaggagtcgacctcgaggggaaagaggt 360
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 501 tctggggacgactcatatcccacgcaggggtaaaggagtcgacctcgaggggaaagaggt 560
Query: 361 cccagtttttataggccctcaggggggaaaaggagaagggggagaagtaggggatttcc 419
|||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 561 cccagtttttataggccctcaggggggaaa-ggagaagggggaga-gtagggtatttcc 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
