Query= MSMg01no545_i21.b1 MSMg01no545_i21.b1 CHROMAT_FILE:
MSMg01no545_i21.b1 PHD_FILE: MSMg01no545_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:33 2005
(685 letters)
>mm_chr3_47439459_47440543
Length = 1085
Score = 1309 bits (677), Expect = 0.0
Identities = 680/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Plus
Query: 5 gaattctcctgatattctgaagga-cacttatcaaagttagtttgctaactaactggggg 63
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcctgatattctgaaggaacacttatcaaagttagtttgctaactaactggggg 263
Query: 64 tttctggggcactttgagcttccttgacttacagacactgtgctccagcctctgcctctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttctggggcactttgagcttccttgacttacagacactgtgctccagcctctgcctctt 323
Query: 124 ctcccacattatctttgcatctacatgtttttcattctgtttaatttcttctacagacat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcccacattatctttgcatctacatgtttttcattctgtttaatttcttctacagacat 383
Query: 184 catttaatatagggctgcattctatccaaaaccatcatcgtctgaattgtatctatttat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catttaatatagggctgcattctatccaaaaccatcatcgtctgaattgtatctatttat 443
Query: 244 tggagtggtggagttcactttttatctcagtactcaggatgtaaaggcatttgctaagtt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggagtggtggagttcactttttatctcagtactcaggatgtaaaggcatttgctaagtt 503
Query: 304 caagaccagccattggtatatatagagttccaggacagccagaggtacacagcaaaattc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagaccagccattggtatatatagagttccaggacagccagaggtacacagcaaaattc 563
Query: 364 tgtcccaaatcgcaccctactgcaccaccaaaaatgaattgaaagaattttaacttattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtcccaaatcgcaccctactgcaccaccaaaaatgaattgaaagaattttaacttattt 623
Query: 424 atatatccaaggaccctgtttaaggtcacatcatgacattcaaatttgatatgaattctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atatatccaaggaccctgtttaaggtcacatcatgacattcaaatttgatatgaattctg 683
Query: 484 aaaggccagtgatacctgcttgtggcaggtatggttttggtaatgatgggtaagagtgtt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaggccagtgatacctgcttgtggcaggtatggttttggtaatgatgggtaagagtgtt 743
Query: 544 ttgactattcagtcccaaggaaaagcagtagtgcattcaaatgttcaaagtggtctaatc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgactattcagtcccaaggaaaagcagtagtgcattcaaatgttcaaagtggtctaatc 803
Query: 604 agatatattttatattactttattgactgtgagtagaacttcataaaatacagagtatac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agatatattttatattactttattgactgtgagtagaacttcataaaatacagagtatac 863
Query: 664 ggtagttaatatcaattctca 684
|||||||||||||||||||||
Sbjct: 864 ggtagttaatatcaattctca 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_i21.g1 MSMg01no545_i21.g1 CHROMAT_FILE:
MSMg01no545_i21.g1 PHD_FILE: MSMg01no545_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:33 2005
(629 letters)
>mm_chr3_47501821_47502849
Length = 1029
Score = 1216 bits (629), Expect = 0.0
Identities = 629/629 (100%)
Strand = Plus / Minus
Query: 1 ccattgaactgttagatggagagctatgaatagatagtggtggctgagcgagggcaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ccattgaactgttagatggagagctatgaatagatagtggtggctgagcgagggcaaggt 609
Query: 61 aggctctccatcaaatgcattcccatatatgttatctagtctcatgtggtctgccctaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aggctctccatcaaatgcattcccatatatgttatctagtctcatgtggtctgccctaga 549
Query: 121 cacatgcaatgttgtatgacctcagcagaatatataattgaaataataataaactgtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cacatgcaatgttgtatgacctcagcagaatatataattgaaataataataaactgtggc 489
Query: 181 atagtcatgatttaacatgacacaggttaaactctttttggagaactgattttttccctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atagtcatgatttaacatgacacaggttaaactctttttggagaactgattttttccctc 429
Query: 241 tctaagtggccactgtgtacttgtagcttttattttaatcattgagctatgtggaattct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tctaagtggccactgtgtacttgtagcttttattttaatcattgagctatgtggaattct 369
Query: 301 ttatgtttatgttggagtaactatatacatacaaattgtaatgaaaaagttttaagttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttatgtttatgttggagtaactatatacatacaaattgtaatgaaaaagttttaagttct 309
Query: 361 agagagtaggaagaaaaggatgcatctatgtgtgttctgaaacatatcagagagacaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agagagtaggaagaaaaggatgcatctatgtgtgttctgaaacatatcagagagacaata 249
Query: 421 aaaccaagaaaaatattaaacataagttgtccaattatatttggaggaaaaaggtattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaaccaagaaaaatattaaacataagttgtccaattatatttggaggaaaaaggtattct 189
Query: 481 atatccttaaccacatggggcatgcagttgcaactacatttagtctatctcatcatagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 atatccttaaccacatggggcatgcagttgcaactacatttagtctatctcatcatagtc 129
Query: 541 agagtggctagtatcaataaagacaaaaaatgaaagctgatggacattttattaattatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 agagtggctagtatcaataaagacaaaaaatgaaagctgatggacattttattaattatt 69
Query: 601 ggggaaaggacatgctatttgcttatagt 629
|||||||||||||||||||||||||||||
Sbjct: 68 ggggaaaggacatgctatttgcttatagt 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
