Query= MSMg01no545_p09.b1 MSMg01no545_p09.b1 CHROMAT_FILE:
MSMg01no545_p09.b1 PHD_FILE: MSMg01no545_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:05 2005
(695 letters)
>mm_chr3_59523218_59524312
Length = 1095
Score = 723 bits (374), Expect = 0.0
Identities = 374/374 (100%)
Strand = Plus / Minus
Query: 322 gaattcaaaatctatgtgaaatccaatattgagaacatgctcggtagcttacttcccaga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gaattcaaaatctatgtgaaatccaatattgagaacatgctcggtagcttacttcccaga 836
Query: 382 aaaaaaatgaagatttgaatatagatgtctagcaccaaagtactgctagacttagggact 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aaaaaaatgaagatttgaatatagatgtctagcaccaaagtactgctagacttagggact 776
Query: 442 gacatctctaacccaagactaatgaaaaaagttaagacaaatagctcacttgagctcact 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gacatctctaacccaagactaatgaaaaaagttaagacaaatagctcacttgagctcact 716
Query: 502 ggccattttttggagcagagttaacaagcagcaagctgaatgcaggaaaaaatgggatgt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ggccattttttggagcagagttaacaagcagcaagctgaatgcaggaaaaaatgggatgt 656
Query: 562 gtctgaaattttttctgcaacaaaatgtaagtaattcagtaagtcttattatgcaaatta 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtctgaaattttttctgcaacaaaatgtaagtaattcagtaagtcttattatgcaaatta 596
Query: 622 caaagtagattatataactttagagctccagtctatgcatctttttttctttataataat 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 caaagtagattatataactttagagctccagtctatgcatctttttttctttataataat 536
Query: 682 acttacctgctttg 695
||||||||||||||
Sbjct: 535 acttacctgctttg 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_p09.g1 MSMg01no545_p09.g1 CHROMAT_FILE:
MSMg01no545_p09.g1 PHD_FILE: MSMg01no545_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:05 2005
(602 letters)
>mm_chr3_59441030_59442036
Length = 1007
Score = 791 bits (409), Expect = 0.0
Identities = 560/621 (90%), Gaps = 33/621 (5%)
Strand = Plus / Plus
Query: 1 taaggtgaccctcaaggttcccagtcactgggagatccacattatctgacatagtcaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 201 taaggtgaccctcaaggttcccagtcactgggagatccacattatctgatatagtcagtt 260
Query: 61 aaataataagcttagtactctgaggagaaattatgtaagtgaaatgaaattttcagacaa 120
||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct: 261 aaacaataagcttagtactctgaggagaaattttgtaggtgaaatgaaattttcaaacaa 320
Query: 121 ggggccttcagaccaggtgactagattagttaccctaaccaatcacgtggtcccttaaat 180
||||||||||||||||||| ||||||||| || ||||||||||||| |||||||||||||
Sbjct: 321 ggggccttcagaccaggtggctagattagatagcctaaccaatcacatggtcccttaaat 380
Query: 181 caaggatttacattttct-gcacaaaagacaagtctgagaggggaaaaa---tggaggcc 236
||||||||| |||||| | |||||||||||||| ||||||||||||||| ||||||||
Sbjct: 381 caaggattttcatttttttgcacaaaagacaagcctgagaggggaaaaaaaatggaggcc 440
Query: 237 atgtgagatatctcaattgcctcttaaagtaaaagggttcacatggcaacctttaaaaaa 296
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 441 atgtgagatatctcaattgcttcttaaagtaaaaggggtcacatggccacctttaaaaaa 500
Query: 297 gaga-tggcttcccaga--aagtaactggaaaaaaaaaagc-tgaaaaacaaattga-gg 351
|| | || ||||||| | |||||||||||||||||||||| | ||||||||||| | ||
Sbjct: 501 gatactg-cttccca-atcaagtaactggaaaaaaaaaagcct-aaaaacaaatttaagg 557
Query: 352 c-----cagttatggttgggcacagctgaaatc-ccagcaagagggatttcacttggaaa 405
| |||||||| | ||||||||| || ||||||| |||||||||||||||||
Sbjct: 558 cagctacagttatg-t-----acagctgaa-tcaccagcaatagggatttcacttggaag 610
Query: 406 aagaattatgagttcaaagtgaatcttggcagcatagcgccagtgcttcaggtcagcttt 465
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 611 gagaattatgagttcaaagtgaatcttggcagcacagcaccagtgcttcaggtcagcttt 670
Query: 466 actatgaagtaatcctttttctcaaaatataaaagagactggtagggagtt----agaga 521
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct: 671 actatgaagtaatcctttttctcaaaatataaaagagactggtaggga--tgaaaagaaa 728
Query: 522 ctaagagagataagagaagaagagcagaagggaaagagggaggaatgagagaagagggaa 581
|||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct: 729 --aagagagataggagaagcagagcaggagggaaagtgggaggaatgagagaagagggaa 786
Query: 582 agaaagagagaaggaggagaa 602
|||||||||||||||||||||
Sbjct: 787 agaaagagagaaggaggagaa 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1007
Length adjustment: 10
Effective length of query: 592
Effective length of database: 997
Effective search space: 590224
Effective search space used: 590224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
