Query= MSMg01no546_b05.b1 MSMg01no546_b05.b1 CHROMAT_FILE:
MSMg01no546_b05.b1 PHD_FILE: MSMg01no546_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:15 2005
(704 letters)
>mm_chr3_71535131_71536234
Length = 1104
Score = 1247 bits (645), Expect = 0.0
Identities = 687/701 (98%), Gaps = 2/701 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcagagcaggttactgtgtaaccacaactttgacaagatagttatctcataac 64
||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||
Sbjct: 205 gaattcagcagagcaggttactgtgtaactacaactttgacaagatacttatttcataac 264
Query: 65 tctaaaacagagggtgaatttcatggttcctcatggaaataaaatatgtcaaaattacag 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 tctaaaacagagggtgaatttcatgattcctcatggaaataaaatatgtcaaaattacag 324
Query: 125 atattgatctattgattctgaataatacacctgaagttctacagttcctgaaatatgtat 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 atattgatctattgattctgaataatatacctgaagttctacagttcctgaaatatgtat 384
Query: 185 ttcaaggtatttatcccacttaagaattttcattttgttgtgagatatttttattatcat 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ttcaaggtatttatcccacttaagaatttgcattttgttgtgagatatttttattatcat 444
Query: 245 ctgtattcgaaatattccttatgactcaagacctatgagaactgaaatgattactgtatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtattcgaaatattccttatgactcaagacctatgagaactgaaatgattactgtatg 504
Query: 305 atgagcaatgattttttgcacctattgaatt-tgatatattttcaatactatgcaattac 363
||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||
Sbjct: 505 atgagcaatgattttttacacctattga-ttgtgatatattttcaatgctatgcaattac 563
Query: 364 aaaaacaagttgtaattgataataaagaaaaaacaattgatagttttattaaaaaatata 423
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 aaaaacaagttgtaattgataataaagaaaaatcaattgatagttttattaaaaaatata 623
Query: 424 agttctgatgaattgctggttttctcttaagacatttgggaccatttttgcagtgttaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agttctgatgaattgctggttttctcttaagacatttgggaccatttttgcagtgttaac 683
Query: 484 agaatattgtcagtaaacgaatggttctacacatgctgaaagtagagaatactggaccat 543
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agaatattgtcagtaaatgaatggttctacacatgctgaaagtagagaatactggaccat 743
Query: 544 ttccaagataataagacagcataagaaacatctttttaattattttgtaagtacttctta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttccaagataataagacagcataagaaacatctttttaattattttgtaagtacttctta 803
Query: 604 ttacaacataaatgctatttacgaaattaaaaacataaattttacaaagtttctggaaaa 663
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttacaacataaatgctgtttacaaaattaaaaacataaattttacaaagtttctggaaaa 863
Query: 664 taacatttatttttatacagaaagcatcataatcctcatta 704
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 taacatttatttttatacagaaagcatcataatcctcatta 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_b05.g1 MSMg01no546_b05.g1 CHROMAT_FILE:
MSMg01no546_b05.g1 PHD_FILE: MSMg01no546_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:15 2005
(680 letters)
>mm_chr3_71708062_71709145
Length = 1084
Score = 1185 bits (613), Expect = 0.0
Identities = 666/685 (97%), Gaps = 6/685 (0%)
Strand = Plus / Minus
Query: 1 ttcctgtggaagggtaaaggggtataaagcaccactagaaagagatttgaagacattttg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ttcctgtgggagggtaaaggggtataaagcaccactagaaagagatttgaagacattttg 825
Query: 61 atattaataataatcaactgaatgtaatatatacctgtagaaaggcacagttatttctgt 120
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||
Sbjct: 824 atattaataataatcaactgaaagtaatatatacctgtagaaagtcacagttatatctgt 765
Query: 121 taggtcagcaatgatttattttaccaaatagtgtgatattaatttttataaagcagcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 taggtcagcaatgatttattttaccaaatagtgtgatattaatttttataaagcagcctc 705
Query: 181 catcataataaataacttcttgagacactcaattttggaagtttctcttaggctgacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 catcataataaataacttcttgagacactcaattttggaagtttctcttaggctgacaga 645
Query: 241 tttctctgccaatgacagctcatttctctaagatcaacactcac-aaaaaaggagcatat 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 644 tttctctgccaatgacagctcatttctctaagatcaacactcacaaaaaaaggagcatat 585
Query: 300 tcttctccctgtatcatcaggtggataagtgaaatgccaagaccagcagacaattctgca 359
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 584 tcttctccgtgtatcatcaggtggatacgtgaaatgccaagaccagcagacaattctgca 525
Query: 360 cccttcagcacacttttccaaagtttgaaagataatatgatattttccatgaagttgtta 419
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 524 cccttcagcacacttttccaaagtttgaaagataatatggtattttccatgaagttgtta 465
Query: 420 tcgaactatctcatttgtgtacttagcacatgaatgctacaaaatattacagaagcaact 479
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct: 464 tcgaactatctcatttgtgtacttagcatatgaatgttacaaaatattacagaagcagct 405
Query: 480 catttggaaagtgtttacttatattcttatgtaatattaaaagcagtttttactatttaa 539
||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct: 404 catttggaaagtgtttacttacattcttgtgtaacattaaaagcagtttttactatttaa 345
Query: 540 aatattgtcaaccttacattaagaataactatttcataagttctctttaattcttaaact 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatattgtcaaccttacattaagaataactatttcataagttctctttaattcttaaact 285
Query: 600 tctcaaaagtttatgacataatttc-atgttgataactattaa---attaattatgagtt 655
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 284 tctcaaaagtttatgacataatt-ctatgttgataactattaacaaattaattatgagtt 226
Query: 656 cctattttaaataataatttttgaa 680
|||||||||||||||||||||||||
Sbjct: 225 cctattttaaataataatttttgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1084
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1074
Effective search space: 719580
Effective search space used: 719580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
