Query= MSMg01no546_b16.b1 MSMg01no546_b16.b1 CHROMAT_FILE:
MSMg01no546_b16.b1 PHD_FILE: MSMg01no546_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:17 2005
(655 letters)
>mm_chr3_76304029_76305083
Length = 1055
Score = 1226 bits (634), Expect = 0.0
Identities = 647/652 (99%), Gaps = 3/652 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgccagacttttgaacatgagcaaataccaatactcctcaaattattctacaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctgccagacttttgaacatgagcaaataccaatactcctcaaattattctacaa 266
Query: 64 catagaagcagcaagagcactgcctaattcaatttatgatgccacagttaccttcataac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 catagaagcagcaagagcactgcctaattcaatttatgatgccacagttaccttcataac 326
Query: 124 taaacattatctggatctcatggaggcacttccccaaatgaatctcctttctttgtgata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaacattatctggatctcatggaggcacttccccaaatgaatctcctttctttgtgata 386
Query: 184 attccagcctgtgtcaagttgacacacaaaaccagccagtatagtaatctaccatataaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attccagcctgtgtcaagttgacacacaaaaccagccagtatagtaatctaccatataaa 446
Query: 244 caacctgaaagaaaaaaaaaatcacatctcattagttgttaaaaactttcgaaaaaaatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 447 caacctgaaagaaaaaaaaaatcacatctcattagttgttaaaaactttcgaaaaaa-tt 505
Query: 304 gtaggtctttcatgaaaaaagtattagagagatcaggaatataaggcacatatctaaaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtaggtctttcatgaaaaaagtattagagagatcaggaatataaggcacatatctaaaca 565
Query: 364 taatcaaaaaaatatacagcaaggctcatagctaacatcaagctaaatggagagaaactt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taatcaaaaaaatatacagcaaggctcatagctaacatcaagctaaatggagagaaactt 625
Query: 424 aaagataatttcttaaatgagaaaattgtatttggaactgacaaaccataatcatgacat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaagataatttcttaaatgagaaaattgtatttggaactgacaaaccataatcatgacat 685
Query: 484 gattttaaaagcacataacttttcgttttaaatttttattttaatctttttattagcttt 543
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 686 gattttaaaagcacataacttttcgttttaaattttt--tttaatctttttattatcttt 743
Query: 544 ttcattaaatgttatgattgtacctaatgaattttagattctcttatttagattccctta 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcattaagtgttatgattgtacctaatgaattttagattctcttatttagattccctta 803
Query: 604 tttttctgcctcatttcccatccttgtactgtaaggtactacttttaaccct 655
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttttctgcctcatttcccatccttgtactgtaaggtactacttttaaccct 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_b16.g1 MSMg01no546_b16.g1 CHROMAT_FILE:
MSMg01no546_b16.g1 PHD_FILE: MSMg01no546_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:17 2005
(503 letters)
>mm_chr3_76474907_76475810
Length = 904
Score = 928 bits (480), Expect = 0.0
Identities = 498/504 (98%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 1 agggccttctgcctgcaagggagcagcttacttcctagctagagccccaaccactttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agggccttctgcctgcaagggagcagcttacttcctagctagagccccaaccactttata 645
Query: 61 cagattatttgataaatggttctaacagcaacaatagaaggcaattccttgtcttacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cagattatttgataaatggttctaacagcaacaatagaaggcaattccttgtcttacaat 585
Query: 121 ttgatatatttcattttatgaaaatgaattgcccactttacaaaaaatattagccatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttgatatatttcattttatgaaaatgaattgcccactttacaaaaaatattagccatgag 525
Query: 181 ctggtacatttattgacttacttatagatctgatctatcattccttatttttatcaactg 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtggtagatttattgacttacttatagatctgatctatcattccttatttttatcaactg 465
Query: 241 ggttaatttaaaataaaaacataagaaccaatgaaaattcactcctggatatattgcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggttaatttaaaataaaaacataagaaccaatgaaaattcactcctggatatattgcttt 405
Query: 301 gaat-aaaaaaaatcactgagtaaatattacttacggaatttttagacttgcatgaaaga 359
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 404 gaataaaaaaaaatcactgagtaaatattacttagggaatttttagacttgcatgaaaga 345
Query: 360 cataaatctcaaacaaaagcaatcttaaatatttgtaatgaaatcaaccttaattttaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cataaatctcaaacaaaagcaatcttaaatatttgtaatgaaatcaaccttaattttaaa 285
Query: 420 agataaagattctcctaggcttagaggaactctataatattcccagtgttcaaggtttag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agataaagattctcctaggcttagaggaactctataatattcccagtgttcaaggtttag 225
Query: 480 tttacttccaagttttagacaaac 503
|| ||||||| |||||||||||||
Sbjct: 224 ttcacttccacgttttagacaaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space: 440742
Effective search space used: 440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
