Query= MSMg01no546_g21.b1 MSMg01no546_g21.b1 CHROMAT_FILE:
MSMg01no546_g21.b1 PHD_FILE: MSMg01no546_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:43 2005
(626 letters)
>mm_chr3_7514062_7515087
Length = 1026
Score = 1127 bits (583), Expect = 0.0
Identities = 610/619 (98%)
Strand = Plus / Plus
Query: 8 ttcattgtcctgaggttttcctttgtaacaaagtagataactaaagaaatacacttttaa 67
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 208 ttcactgtcctgaggttttcctttgtaacaaagtaggtaactaaagaaatacacttttaa 267
Query: 68 ccaagtgaattgtgtgtgttttaatttataatattgaatttttagaccatgaaaatatat 127
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 268 ccaagtgaattgtgtgtgttttcatttataatattgaatttttacaccatgaaaatatat 327
Query: 128 gaaaactcaggaagggtaatagattattaagcatgtccagttattttgactcattaatgt 187
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaaaactcaggaaggctaatagattattaagcatgtccagttattttgactcattaatgt 387
Query: 188 aaaaacattgttatcttaatgaggttccttatggaaaccacttcagccttcatagtccag 247
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaaacattgttatcttattgaggttccttatggaaaccacttcagccttcatagtccag 447
Query: 248 agcagttaggttcctcttaagtgacctttttaatgccagtgtttaatgccaggaggaaaa 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agcagttaggttcctcttaagtgacctttttaatgccagtgtttaatgccaggaggaaaa 507
Query: 308 acaaaacaaaacaaaacaaaaccatcaggtgagtcctaggcttgcttttctaccatgcag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acaaaacaaaacaaaacaaaaccatcaggtgagtcctaggcttgcttttctaccatgcag 567
Query: 368 cttaactactattacaaagacatctcacctccatctgcgctgccaccattcaccagtgaa 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttaactactattacaaagacatctcacctccatctgcgctgccaccattcaccagtgaa 627
Query: 428 ataggtcagtggggcgggaggagggcgagagcaaccgttcttctgtgcctgcattgagga 487
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acaggtcaatggggcgggaggagggcgagagcaaccgttcttctgtgcctgcattgagga 687
Query: 488 cctgctgctgggccattgtgatcactatcctgctgctctgtggactcacctagtggccaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cctgctgctgggccattgtgatcactatcctgctgctctgtggactcacctagtggccaa 747
Query: 548 agagctgattttatgaagtcaaattctgcgggtttttttccaggagtttattatgctgag 607
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 agggctgattttatgaagtcaaattctgcgggtttttttccaggagtttattatgctgag 807
Query: 608 cagaaaacacctttttcct 626
|||||||||||||||||||
Sbjct: 808 cagaaaacacctttttcct 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_g21.g1 MSMg01no546_g21.g1 CHROMAT_FILE:
MSMg01no546_g21.g1 PHD_FILE: MSMg01no546_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:43 2005
(660 letters)
>mm_chr3_7652650_7653711
Length = 1062
Score = 1237 bits (640), Expect = 0.0
Identities = 656/662 (99%), Gaps = 2/662 (0%)
Strand = Plus / Minus
Query: 1 cacatctcagcagtttgtttatttcaaaatataaacaccattttatatgttcattataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 cacatctcagcagtttgtttatttcaaaatataaacaccattttatatgttcattataat 803
Query: 61 catagatccatattcttgcttatattcacttgagtattcacacacaaagtcctttttttc 120
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 802 catggatccatattcttgcttatattcacttgagtattcatacacaaagtcctttttttc 743
Query: 121 ttcatttaattgtattttgtattctgtgtaggaaaaaaaattatttccaattatatatat 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttcattttattgtattttgtattctgtgtaggaaaaaaaattatttccaattatatatat 683
Query: 181 ctgttccacatttgttacatgaacttgggatatttgtattcccttatgaagagtggtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctgttccacatttgttacatgaacttgggatatttgtattcccttatgaagagtggtgaa 623
Query: 241 aacaccaggttatttttcactcctcactataaacatattctgctgattttattggtgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aacaccaggttatttttcactcctcactataaacatattctgctgattttattggtgtgt 563
Query: 301 caattcatgtctctatggctttctaaatatctcttttctttaggtattatgttgcaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caattcatgtctctatggctttctaaatatctcttttctttaggtattatgttgcaaaac 503
Query: 361 caagatgtattaaagcatcgatttcattttcaattttatctgtataaggataattcatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caagatgtattaaagcatcgatttcattttcaattttatctgtataaggataattcatga 443
Query: 421 atctcagagacaaggatccatgcttttaatcaactat--aaaaaatcttaaacttcaact 478
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 442 atctcagagacaaggatccatgcttttaatcaactataaaaaaaatcttaaacttcaact 383
Query: 479 ctgagtaatttctcttcatcgtcttaatttttgtctttgagaagcatgatcacatacgtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 382 ctgagtaatttctcttcatcgtcttaatttttgtctttgagaagcatgatcacatacatt 323
Query: 539 tgatacattttgattacatgctcctttgattttagatattcattatctgtactgaatata 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgatacattttgattacatgctcctttgattttagatattcattatctgtactgaatata 263
Query: 599 ctaatttctggtataatctataccacaatctttctcatttaccatggttaatctctttgt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctaatttctggtataatctataccacaatctttctcatttaccatggttaatctctttgt 203
Query: 659 ga 660
||
Sbjct: 202 ga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1062
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1052
Effective search space: 683800
Effective search space used: 683800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
