XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAGC
CTAGGGTCAACTCAAGGACTGCCTAGGACATGGGAACACTGGTGGAGGCT
AATCCAACTTAGCTATATGTCAAAAGCAATCCTTAGAGGAACTTATAATA
AAACAATATTGAAGGAAAACACATAGATCTGTTCACTGATTAAAGCAAGG
ACAGATTTGGAGCATTCCTTTTACAGGATGCCATGGTTCCAGGAGACTAA
GTTTCCGTGAACTTTTCGCCACGGGACTGCATCCAAGCTTTTGAGCCTGT
CACCCAGAGTCACTACTGGAGTGGGTGTCGTAGGAAGTCAAGTTGGAGAG
ATTCCTAATATATAATAAAGACATTATTAGGATAAAAGTCTCATTGTAAA
CTCCAAACGGAGACTGTTATACAACCAATCAAAATTCCTAGTTGTAGAGC
CCAGTCCCAGTGGATACAAGTACAAATGAACTCTACACAATGCTTAGGGA
ACAATGCAAGAGAGGTGATAGAAAGAGAATCCGAGCAGAAGATTAGGAGT
GTGCCTTCAGATTGTGCCTCCTGCATGATTTCATTATTTATTTATTTAGT
TAGTTAGTTTATTTTTGAGAGTGTATTTTGATTACATTTCTCCCTTCCTT
TCCTCTGTGCAAGCCCTGTCATATACACCTCCCTATTCTCCCTCATGTGT
GGCCTAAAGTTGTGTTATCTTAATGATTATATTATGGGAAATATTTTAGT
TCATATTTTCATACATACTTTAAN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTTAACATAGGGAAATTACTTCTAACCTCATTG
ACATGTTCATAAGTTGTTGATTATAATTTCTGTGGAATTAGTAACACAAA
TGTTATCAAAGTTTTTACTTTCAGTTTCTTTAATTTTGTGCACACAGTGA
GACAAGTTCTCAGGGGATTGAATTCTCATTTAATTTTCTGAATTGGTTAT
TTATACACTTGAAACAAAAATAACTCCCAATTCTTTTCATAGTTTTCTTT
TATACAAGCTTTCCAATAACTCTCCAGGGTTTATAATTTTAATATAGAAA
GCATTGAATAAATTTCCTCTTTTTAATAATCTTCATGTGCTTCATATTGT
ATAAGAAATGACATTTTTGAAAGTTGTATGTAAGATATGTTAAAATATTA
ATATATATGTATGCTACTAATACTAATAATGATAAGTGAATAGAATCATA
TTGAGTATAACACAGTGACACATTTTACAAAGAATTATATGAATTCTTTT
AAGAAACAGGGTATCACTACATTGAATTGGTGTTCAAATCCAGAGCCAAT
GGTAGAGTGCTGGATAAAACGAAGGTTGTATATATATTATCTAATACTTT
TTAAAAAAATTTTTGTAGTGCTTATGAGAAGGGGCAAGCCAAGATGATCT
TTCTCAACCAGACTTGAGAAGTGACTTG

Query= MSMg01no547_o12.g1 MSMg01no547_o12.g1 CHROMAT_FILE:
MSMg01no547_o12.g1 PHD_FILE: MSMg01no547_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:39 2005
         (645 letters)



>mm_chr3_114826333_114827377
          Length = 1045

 Score = 1224 bits (633), Expect = 0.0
 Identities = 642/645 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttaacatagggaaattacttctaacctcattgacatgttcataagttgttgattata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tttttaacatagggaaattacttctaacctcattgacatgttcataagttgttgattata 704

                                                                       
Query: 61  atttctgtggaattagtaacacaaatgttatcaaagtttttactttcagtttctttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atttctgtggaattagtaacacaaatgttatcaaagtttttactttcagtttctttaatt 644

                                                                       
Query: 121 ttgtgcacacagtgagacaagttctcaggggattgaattctcatttaattttctgaattg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttgcgcacacagtgagacaagttctcaggggattgaattctcatttaattttctgaattg 584

                                                                       
Query: 181 gttatttatacacttgaaacaaaaataactcccaattcttttcatagttttcttttatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gttatttatacacttgaaacaaaaataactcccaattcttttcatagttttcttttatac 524

                                                                       
Query: 241 aagctttccaataactctccagggtttataattttaatatagaaagcattgaataaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aagctttccaataactctccagggtttataattttaatatagaaagcattgaataaattt 464

                                                                       
Query: 301 cctctttttaataatcttcatgtgcttcatattgtataagaaatgacatttttgaaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cctctttttaataatcttcatgtgcttcatattgtataagaaatgacatttttgaaagtt 404

                                                                       
Query: 361 gtatgtaagatatgttaaaatattaatatatatgtatgctactaatactaataatgataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gtatgtaagatatgttaaaatattaatatatatgtatgctactaatactaataatgataa 344

                                                                       
Query: 421 gtgaatagaatcatattgagtataacacagtgacacattttacaaagaattatatgaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gtgaatagaatcatattgagtataacacagtgacacattttacaaagaattatatgaatt 284

                                                                       
Query: 481 cttttaagaaacagggtatcactacattgaattggtgttcaaatccagagccaatggtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cttttaagaaacagggtatcactacattgaattggtgttcaaatccagagccaatggtag 224

                                                                       
Query: 541 agtgctggataaaacgaaggttgtatatatattatctaatactttttaaaaaaatttttg 600
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 223 agtgctggataaaacaaaggttgtatatatattatctaatacttttttaaaaaatttttg 164

                                                        
Query: 601 tagtgcttatgagaaggggcaagccaagatgatctttctcaacca 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tagtgcttatgagaaggggcaagccaagatgatctttctcaacca 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)