Query= MSMg01no548_d14.b1 MSMg01no548_d14.b1 CHROMAT_FILE:
MSMg01no548_d14.b1 PHD_FILE: MSMg01no548_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:05 2005
(569 letters)
>mm_chr3_70854429_70855397
Length = 969
Score = 810 bits (419), Expect = 0.0
Identities = 437/443 (98%)
Strand = Plus / Minus
Query: 127 tcaatttcattgcatttcagtcctggtgttaatgttaattggtatttgatctgtaaataa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 tcaatttcattgcatttcagtcctggtgttaatgttaattggtatttgatctgtaaataa 910
Query: 187 aatttcaaaaaggtataatcataatgcagattcaccagtataatttattctaacatatca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aatttcaaaaaggtataatcataatgcagattcaccagtataatttattctaacatatca 850
Query: 247 atgacatgtttgagtttctaaaattaattttccactcacactgataaatctgcctctatg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 atgacatgtttgagtttctaaaattaattttccactcacactgataaatctgcctctatg 790
Query: 307 ttttagaacaatgcatgtgatgtaataaagctgagaactctaatggcagctcgggactac 366
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttttagaagaatgcatgtgatgtaataaagctgagaactctaatggcagctcgggactac 730
Query: 367 tgacactgaattgaaagcaatatatttctgtgaatacattgaattttatatataagatca 426
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct: 729 tgacactgaattgaaagcaatatatttctgtgtatacattgaattctacatataagatca 670
Query: 427 tgaacatatagtggtacccgttacaatcatacaactataatatggcaagtggattgcgta 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 669 tgaacatatagtggtacccgttacaatcatacaactataatatggcaagtggattgcata 610
Query: 487 tgaatacaacttagacaaatgattaatatcattattggttcatttcatgactttccattt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgaatacaacttagacaaatgattaatatcattattggttcatttcatgactttccattt 550
Query: 547 ctgcataaatttacatgagccca 569
|||||||||||| ||||||||||
Sbjct: 549 ctgcataaattttcatgagccca 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_d14.g1 MSMg01no548_d14.g1 CHROMAT_FILE:
MSMg01no548_d14.g1 PHD_FILE: MSMg01no548_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:05 2005
(554 letters)
>mm_chr3_70706410_70707363
Length = 954
Score = 982 bits (508), Expect = 0.0
Identities = 546/562 (97%), Gaps = 8/562 (1%)
Strand = Plus / Plus
Query: 1 tcacctgaggaatacggaatggcagagaaacacctgaaaaaa-tgttcaacatccttaat 59
||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 193 tcacctgaggaataccgaatggcagagaaacacctgaaaaaaatattcaacatccttaat 252
Query: 60 catcag-----gga--aatgcaaatcaaaacaacactgagattccacttcactccagtca 112
||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 catcatcatttgcatcaatgcaaatcaaaacaacactgagattccacttcactccagtca 312
Query: 113 gaatggctaagatcaaaaactctggtgacagcagatgttggcgaggatgtggagaaaggg 172
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaatggctaagatcaaaaaatctggtgacagcagatgttggcgaggatgtggagaaaggg 372
Query: 173 gaacactcctccattgttggttggattgcaagcttgtacaaccactctggaaatcagtct 232
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaacactcctccattgttggtgggattgcaagcttgtacaaccactctggaaatcagtct 432
Query: 233 ggcggttcctcagaaaattggacatagtactaccatgataattcttataagcacagtatc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggcggttcctcagaaaattggacatagtactaccatgataattcttataagcacagtatc 492
Query: 293 ctcatgatgaacttgcatggtgaaaggatacccccatgtcggtgtgaagaatagtaaaga 352
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 493 ctcatgatgaacttgcatggtgaaaggataaccccatgtcggtgtgaagaatagtaaaga 552
Query: 353 agcattttgatatctttcttgagcacaaattagactttgtcctgattttgcatgcaagat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agcattttgatatctttcttgagcacaaattagactttgtcctgattttgcatgcaagat 612
Query: 413 agacttatacataattcactgttacttctgggtgttagcttctgcaatttactatgtaca 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 613 agacttatacataattcactgttacttctgggtgttagcttctgcaatttactaggtaca 672
Query: 473 tattgagtcaataaactgctaccatgttattgccttctgagagaggatacttcaggagtc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tattgagtcaataaactgctaccatgttattgccttctgagagaggatacttcaggagtc 732
Query: 533 tgactgggttcacacagtacta 554
||||||||||||||||||||||
Sbjct: 733 tgactgggttcacacagtacta 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
