Query= MSMg01no548_m05.b1 MSMg01no548_m05.b1 CHROMAT_FILE:
MSMg01no548_m05.b1 PHD_FILE: MSMg01no548_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:46 2005
(450 letters)
>mm_chr3_47704129_47704978
Length = 850
Score = 835 bits (432), Expect = 0.0
Identities = 446/458 (97%), Gaps = 12/458 (2%)
Strand = Plus / Plus
Query: 5 gaattcttgttttgtaatgattggatttgatatatatgttaatcaaaatatattttctcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattcttgttttgtaatgattggatttgatatatatgttaatcaaaatatattttctcc 252
Query: 65 attttatttcactattgctcaatgtctgtttggtgtctttatctattaatgatatctatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attttatttcactattgctcaatgtctgtttggtgtctttatctattaatgatatctatc 312
Query: 125 tatctatcatctatctatctatctatctatctatctatctatctatctatctatct---- 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tatctatcatctatctatctatctatctatctatctatctatctatctatctatctatct 372
Query: 181 --------ttctttctttctttctatgagataattatgtataaatatatataataacata 232
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atctatctttctttctttctttctatgagataattatgtataaatatatataataacata 432
Query: 233 agataactgtctttgcatcttatgaagcataaaggaggtgcttaggtattgtcagtgtta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agataactgtctttgcatcttatgaagcataaaggaggtgcttaggtattgtcagtgtta 492
Query: 293 gtttcaggacaaactaagacatcttacataccaacaattatctctatgtaaaggttagca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtttcaggacaaactaagacatcttacataccaacaattatctctatgtaaaggttagca 552
Query: 353 ggttttttattagatattttctctgtttacattccaaatgttctcccatttccaggtgtg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggttttttattagatattttctctgtttacattccaaatgttctcccatttccaggtgtg 612
Query: 413 ccccctgaacacccctatcccattccacttccctctgc 450
||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccccctgaacacccctatcccattccacttccctctgc 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_m05.g1 MSMg01no548_m05.g1 CHROMAT_FILE:
MSMg01no548_m05.g1 PHD_FILE: MSMg01no548_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:46 2005
(514 letters)
>mm_chr3_47861060_47861973
Length = 914
Score = 994 bits (514), Expect = 0.0
Identities = 514/514 (100%)
Strand = Plus / Minus
Query: 1 actgttgggattctggtaaaatcatcattgctacaagcaagatgtatagaagttactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 actgttgggattctggtaaaatcatcattgctacaagcaagatgtatagaagttactgaa 655
Query: 61 aggaaagaaaaacaagtgttattcgtgtaaatcattaagttcaaaaactattcaaataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aggaaagaaaaacaagtgttattcgtgtaaatcattaagttcaaaaactattcaaataat 595
Query: 121 taaatagttacaaaattacctatgtaatacaattataaaaaattgtaaaaatgtaagagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taaatagttacaaaattacctatgtaatacaattataaaaaattgtaaaaatgtaagagt 535
Query: 181 tttgtgtaggtgtataataagggaaaagtccatgcaatatgacacagctgggtaatatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tttgtgtaggtgtataataagggaaaagtccatgcaatatgacacagctgggtaatatca 475
Query: 241 acaaagaatattctacaaattaaaactttcacaactcttctcaaataagcaacttagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 acaaagaatattctacaaattaaaactttcacaactcttctcaaataagcaacttagctt 415
Query: 301 atagcatttcatagactaggtagttaaaatactcaacagcaagggaagcattttgatatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atagcatttcatagactaggtagttaaaatactcaacagcaagggaagcattttgatatg 355
Query: 361 aaaacaatggaatttatcatttattcacaagtcattactacatatatttttctaactgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaaacaatggaatttatcatttattcacaagtcattactacatatatttttctaactgaa 295
Query: 421 aggaaatgtaaatttcatgtaatagctactgggtgttataatactgatcttggattttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aggaaatgtaaatttcatgtaatagctactgggtgttataatactgatcttggattttct 235
Query: 481 ttgctattattttgtggagtttatttatccaata 514
||||||||||||||||||||||||||||||||||
Sbjct: 234 ttgctattattttgtggagtttatttatccaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
