BAC Information

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BAC

Clone NameB6Ng01-001F17
Chromosome4 (Build37)
Map Location 114,488,153 - 114,638,870
singlet/doubletdoublet
Overlap geneFoxd2, LOC100040736, Foxe3, Cmpk
Upstream geneLOC242627, LOC100040625, A630098G03Rik, LOC666048
Downstream geneStil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F17.bB6Ng01-001F17.g
ACCDH839703DH839704
length714988
definitionDH839703|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F17, 5' end.DH839704|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,638,157 - 114,638,870)(114,488,153 - 114,488,811)
sequence
gaattcagtgggaccatgctcaataaataaataaacaaacaaaaagtaaa
aagatgggatattgcacagtaatagagtgctttcctagcttctagctatt
agatttgatttatagtaaatttgagccctaatagaaagagcatgttttca
gcagtgagtggtggtgcacacatatagccctagttcttcaagttggaaat
cagaccatgttacgtagtgagttcctgtctgaaaaaacaaacaaacaaaa
acccagctactacctcctataacacagtgatttagagagaaacatggggc
aatgcagggtctttagacgttagagcaaagctctaagtggtaatttgtat
gagaaggtagtatacaccgtgctgaccagctgtcactgtaccagcatttt
agttacgtggacacagggttttggcccactggtcaggatgctaggtggca
gtgatacacacagtaaggaagactactactcttggcccggaagcaaaaag
ataaaagggccaggatccaatagtcccctttagaagtgtattcccaatga
tctatgaggccactcttttttgtttgtttgtttgtttttgtttttttgtt
tttcaaacagggtttctgtgtgcagctctggctgtcctggaactcactct
gtacaccaggctggcctcagatttcacaaatctgcctgcctctgcctcag
cctcctaagtgctg
gaattccattcctacttctatttcctagctgctgagcaaagcaagcgcct
cttcctagcatctatgtccatgggcacataagagcttgctcattacaact
caggcactattctaaatacttcgaatgtgctgctatttgtccttttcctt
tctctttatactattttaagttttatgattataattatcatttccctttc
ctcaatctaagccctcccatacatgcctcctcactgtttgatattcatga
cccatttctcattcattgttgctatatacatataagtatgtgtatctatg
gatatatatgaatttttacacacacacacacacacaggtacaacctgttc
agcctgtaaatttatgttttcagggcaaccatttggtattagatcaccaa
ttggcttccctgcaaaagactggttctctcgctcccagcattcctccgtt
gcctatttgtagttcttcctttgaggttgaggtctcctgggcttctcact
ccctgttcttgttagcatcctattgttgttgtccttgttcagctcttttt
ttttttcaggcagccatgctgtgaaactgtagggatgcagcttctgacat
tctaaagagatctcacaatgagacaatctcacctcaaactctctatgctc
tggctcttacagtcattctgcccccttttctgcaatgatcccagagcctt
aagtgtggcagttgtatcatagatgcattctttggactgagctctacaac
cctgcattttggttggttctcttctataacggtctcttgtttgttgcaaa
gagaagttcccttgatgaggggtgaggacgacgtttatctgtgggtatta
ggacaaagattcataatgtagttatggaatatgctagtttagtaaattag
agggtgtaggttctcctccaagattcatgacttcattagtctgggtagta
ggctactttccagtataggtaggatttcccattgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_114638157_114638870
seq2: B6Ng01-001F17.b_46_759 (reverse)

seq1  CAGCACTTAGGAGGCAGAGGCAGAGGCAGGCAGATTTCTGAGTTCCGAGG  50
      ||||||||||||||| ||||||||||||||||||||| |||  || ||||
seq2  CAGCACTTAGGAGGCTGAGGCAGAGGCAGGCAGATTTGTGAAATCTGAGG  50

seq1  CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTGCACACAGA  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTGTACAGAGTGAGTTCCAGGACAGCCAGAGCTGCACACAGA  100

seq1  AACCCTGTTTGAAAAACAAAAAAACAAAAACAAACAAACAAACAAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTTTGAAAAACAAAAAAACAAAAACAAACAAACAAACAAAAAAG  150

seq1  AGTGGCCTCATAGATCATTGGGAATACACTTCTAAAGGGGACTATTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCTCATAGATCATTGGGAATACACTTCTAAAGGGGACTATTGGAT  200

seq1  CCTGGCCCTTTTATCTTTTTGCTTCCGGGCCAAGAGTAGTAGTCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCTTTTATCTTTTTGCTTCCGGGCCAAGAGTAGTAGTCTTCCTT  250

seq1  ACTGTGTGTATCACTGCCACCTAGCATCCTGACCAGTGGGCCAAAACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGTATCACTGCCACCTAGCATCCTGACCAGTGGGCCAAAACCCT  300

seq1  GTGTCCACGTAACTAAAATGCTGGTACAGTGACAGCTGGTCAGCACGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCACGTAACTAAAATGCTGGTACAGTGACAGCTGGTCAGCACGGTG  350

seq1  TATACTACCTTCTCATACAAATTACCACTTAGAGCTTTGCTCTAACGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACCTTCTCATACAAATTACCACTTAGAGCTTTGCTCTAACGTCT  400

seq1  AAAGACCCTGCATTGCCCCATGTTTCTCTCTAAATCACTGTGTTATAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCTGCATTGCCCCATGTTTCTCTCTAAATCACTGTGTTATAGGA  450

seq1  GGTAGTAGCTGGGTTTTTGTTTGTTTGTTTTTTCAGACAGGAACTCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAGCTGGGTTTTTGTTTGTTTGTTTTTTCAGACAGGAACTCACTA  500

seq1  CGTAACATGGTCTGATTTCCAACTTGAAGAACTAGGGCTATATGTGTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACATGGTCTGATTTCCAACTTGAAGAACTAGGGCTATATGTGTGCA  550

seq1  CCACCACTCACTGCTGAAAACATGCTCTTTCTATTAGGGCTCAAATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTCACTGCTGAAAACATGCTCTTTCTATTAGGGCTCAAATTTAC  600

seq1  TATAAATCAAATCTAATAGCTAGAAGCTAGGAAAGCACTCTATTACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCAAATCTAATAGCTAGAAGCTAGGAAAGCACTCTATTACTGTG  650

seq1  CAATATCCCATCTTTTTACTTTTTGTTTGTTTATTTATTTATTGAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCCCATCTTTTTACTTTTTGTTTGTTTATTTATTTATTGAGCATG  700

seq1  GTCCCACTGAATTC  714
      ||||||||||||||
seq2  GTCCCACTGAATTC  714

seq1: chr4_114488153_114488811
seq2: B6Ng01-001F17.g_67_725

seq1  GAATTCCATTCCTACTTCTATTTCCTAGCTGCTGAGCAAAGCAAGCGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCTACTTCTATTTCCTAGCTGCTGAGCAAAGCAAGCGCCT  50

seq1  CTTCCTAGCATCTATGTCCATGGGCACATAAGAGCTTGCTCATTACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGCATCTATGTCCATGGGCACATAAGAGCTTGCTCATTACAACT  100

seq1  CAGGCACTATTCTAAATACTTCGAATGTGCTGCTATTTGTCCTTTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTATTCTAAATACTTCGAATGTGCTGCTATTTGTCCTTTTCCTT  150

seq1  TCTCTTTATACTATTTTAAGTTTTATGATTATAATTATCATTTCCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATACTATTTTAAGTTTTATGATTATAATTATCATTTCCCTTTC  200

seq1  CTCAATCTAAGCCCTCCCATACATGCCTCCTCACTGTTTGATATTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCTAAGCCCTCCCATACATGCCTCCTCACTGTTTGATATTCATGA  250

seq1  CCCATTTCTCATTCATTGTTGCTATATACATATAAGTATGTGTATCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCTCATTCATTGTTGCTATATACATATAAGTATGTGTATCTATG  300

seq1  GATATATATGAATTTTTACACACACACACACACACAGGTACAACCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATATGAATTTTTACACACACACACACACACAGGTACAACCTGTTC  350

seq1  AGCCTGTAAATTTATGTTTTCAGGGCAACCATTTGGTATTAGATCACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAAATTTATGTTTTCAGGGCAACCATTTGGTATTAGATCACCAA  400

seq1  TTGGCTTCCCTGCAAAAGACTGGTTCTCTCGCTCCCAGCATTCCTCCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCCTGCAAAAGACTGGTTCTCTCGCTCCCAGCATTCCTCCGTT  450

seq1  GCCTATTTGTAGTTCTTCCTTTGAGGTTGAGGTCTCCTGGGCTTCTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTGTAGTTCTTCCTTTGAGGTTGAGGTCTCCTGGGCTTCTCACT  500

seq1  CCCTGTTCTTGTTAGCATCCTATTGTTGTTGTCCTTGTTCAGCTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTTGTTAGCATCCTATTGTTGTTGTCCTTGTTCAGCTCTTTTT  550

seq1  TTTTTTCAGGCAGCCATGCTGTGAAACTGTAGGGATGCAGCTTCTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGGCAGCCATGCTGTGAAACTGTAGGGATGCAGCTTCTGACAT  600

seq1  TCTAAAGAGATCTCACAATGAGACAATCTCACCTCAAACTCTCTATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGAGATCTCACAATGAGACAATCTCACCTCAAACTCTCTATGCTC  650

seq1  TGGCTCTTA  659
      |||||||||
seq2  TGGCTCTTA  659