BAC Information

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BAC

Clone NameB6Ng01-001N03
Chromosome4 (Build37)
Map Location 18,546,207 - 18,617,302
singlet/doubletdoublet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001N03.bB6Ng01-001N03.g
ACCDH840033DH840034
length1,0161,108
definitionDH840033|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N03, 5' end.DH840034|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,546,207 - 18,546,756)(18,616,188 - 18,617,302)
sequence
gaattcttatgtccataaattgcttctgtcacatattaaggaaactaacc
aatagagaagagtatccactgctctgcttttagaaacatgtgttttaaag
aactttggcattttactgtggaaggaatacaggagagtttatagcagtgg
gacacaaaagcactaacatgttgtaagcaaagtttaatgggccattctgg
agggaataaggaaaatcagaattctgaaaggtaaacacagtgatactctt
gcttgtgaggcttcagaaggcccagagggtcttggaaatctggtgagaat
acattcatgacagattctggcaaatttttcacctgaactttgcctgtgtc
ttagaaacttgcatgtggctgaattgaaaaggcaatggattaagtagtat
gagtaaagcaaacttcaagattacatcatatccagacagtgtcatagtta
atctttagtgctccaatgagatttacagtgacagagagcagaaagatata
caaagagaaaaggagaagaaatgtgcttaaagttagacatgggtgaatgc
atagaaagtaacattaatcgataaacattaaagagaaacctcaggccctg
agcctagaggatagtacagacaactggagaataagtccctgtccatcaaa
ggctttaacttgtaacagtgaaaaatgcctttcatttgaaaaaagtaaag
gagtttgagctgacaatggccaaaggagtatctagaaaatagtttcaaga
tacatggaggcagtttcagttcagagggggaaaaaagctgaatcttgatc
ttgctgcaaaagttgtcagttggggctggagagatggctcagcggttaag
agcactgactgctcttccgaaggtcctgagttcaaatcccagcaaccaca
tggtggctcacaaccatccgtaatgagatctggcgccctcttctggagtg
tctgaagacagctacagtgtgcttacatacatacaataaataaataaatc
ttaaaaaaaaaaaaaa
gaattctaggcctatgtccttcatttcaatcttctgaaaatcaatgtatt
atttttgggggaatttatatgcatttgatgatatacattctttatactca
tacattcatatcatcatatcctccatcacttccattctcactaaatttta
tgttgtcttttttactattattcttttaaacatatcaagtactggtggaa
ctatctgcatacttttgttgcatagtctttcacttgaatgtgatgaactt
actatgtgccacatctataaagtaaaacagacttttcttcttttaacaga
tatttgttgcttgactgaccagcatgcgtgtgtacacatagtcattcaaa
tattataaaataattttaaaatactttggctgatataatacaaattgcat
tatttctccacagagacaactctgaatccaaataggcaaacattaggtta
gtgcaaagagaagcaaagcctcacatgccttttgccttattttattctgt
tcttagatattccttcttgagcaattccagacattgctttccatatatta
catatatggtggcctaaaatattaatgaatatagtttgaaaagagaatat
aaggatggaagtagtaaaaagggaaagaaaatccagatatattcataaaa
cttgttcatgagtgagaagggttaacaatggggaacaatacaaaaagcat
gtgtgtacatgtttgtgtgtgtttgtatgtgtgtgcatgtgtacatgtat
gagtgtgcgtgataattatgtaagagaataattggaaaatgttacaagaa
ataattattatttaaaggtgttaacaataaaggtaagatgtagccaaatc
tgtctattgctcatgccattttttgttatgtatcactatgtataacttct
gaagtagtgctgctgaatgtctttgtgggtttttctacttctttagctct
ctgattttcatgatgtggtaagtgacactaacaattacagactctatgca
caaattttattttcttgagaaattttaggggatgattttattcatttgtg
gaatggttttgcttattcagttacaggctgccacactctgagctatagtt
actctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18546207_18546756
seq2: B6Ng01-001N03.b_47_596

seq1  GAATTCTTATGTCCATAAATTGCTTCTGTCACATATTAAGGAAACTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGTCCATAAATTGCTTCTGTCACATATTAAGGAAACTAACC  50

seq1  AATAGAGAAGAGTATCCACTGCTCTGCTTTTAGAAACATGTGTTTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAAGAGTATCCACTGCTCTGCTTTTAGAAACATGTGTTTTAAAG  100

seq1  AACTTTGGCATTTTACTGTGGAAGGAATACAGGAGAGTTTATAGCAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGCATTTTACTGTGGAAGGAATACAGGAGAGTTTATAGCAGTGG  150

seq1  GACACAAAAGCACTAACATGTTGTAAGCAAAGTTTAATGGGCCATTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAAAGCACTAACATGTTGTAAGCAAAGTTTAATGGGCCATTCTGG  200

seq1  AGGGAATAAGGAAAATCAGAATTCTGAAAGGTAAACACAGTGATACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAAGGAAAATCAGAATTCTGAAAGGTAAACACAGTGATACTCTT  250

seq1  GCTTGTGAGGCTTCAGAAGGCCCAGAGGGTCTTGGAAATCTGGTGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAGGCTTCAGAAGGCCCAGAGGGTCTTGGAAATCTGGTGAGAAT  300

seq1  ACATTCATGACAGATTCTGGCAAATTTTTCACCTGAACTTTGCCTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATGACAGATTCTGGCAAATTTTTCACCTGAACTTTGCCTGTGTC  350

seq1  TTAGAAACTTGCATGTGGCTGAATTGAAAAGGCAATGGATTAAGTAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACTTGCATGTGGCTGAATTGAAAAGGCAATGGATTAAGTAGTAT  400

seq1  GAGTAAAGCAAACTTCAAGATTACATCATATCCAGACAGTGTCATAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGCAAACTTCAAGATTACATCATATCCAGACAGTGTCATAGTTA  450

seq1  ATCTTTAGTGCTCCAATGAGATTTACAGTGACAGAGAGCAGAAAGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAGTGCTCCAATGAGATTTACAGTGACAGAGAGCAGAAAGATATA  500

seq1  CAAAGAGAAAAGGAGAAGAAATGTGCTTAAAGTTAGACATGGGTGAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAAAGGAGAAGAAATGTGCTTAAAGTTAGACATGGGTGAATGC  550

seq1: chr4_18616188_18617302
seq2: B6Ng01-001N03.g_68_1175 (reverse)

seq1  GAAAGAGTAACCTATAGCTCAGAGTGTGGCAGCCTGTTACTGAATTAGGC  50
      |||||||||| |||||||||||||||||||||||||| |||||| || ||
seq2  GAAAGAGTAA-CTATAGCTCAGAGTGTGGCAGCCTGTAACTGAA-TAAGC  48

seq1  AAAACCATTCCACAAATGGAATTAAAATTCATCCCTTAAAATGTCTCCAA  100
      ||||||||||||||||| ||||  ||| ||||||| |||||| |||| | 
seq2  AAAACCATTCCACAAAT-GAAT--AAAATCATCCCCTAAAATTTCTCAAG  95

seq1  GAAAT-ACATTTGTGCATTAGAGTCTGTAATTGTTAGTGTTCACTTAACC  149
       |||| | ||||||||| ||||||||||||||||||||| |||||| |||
seq2  AAAATAAAATTTGTGCA-TAGAGTCTGTAATTGTTAGTG-TCACTT-ACC  142

seq1  ACATCATGAAAATCAGAGAGCTAAAGAAGTAGAAAAACCCACAAAGACAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACATCATGAAAATCAGAGAGCTAAAGAAGTAGAAAAACCCACAAAGACA-  191

seq1  TTCAGCAGCACTACTTCAGAAGTTATACATAGTGATACATAACAAAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGCACTACTTCAGAAGTTATACATAGTGATACATAACAAAAAAT  241

seq1  GGCATGAGCAATAGACAGATTTGGCTACATCTTACC-TTATTGTTAACAC  298
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCATGAGCAATAGACAGATTTGGCTACATCTTACCTTTATTGTTAACAC  291

seq1  CTTTAAATAATAATTATTTCTTGTAACATTTTCCAATTATTCTCTTACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATAATAATTATTTCTTGTAACATTTTCCAATTATTCTCTTACAT  341

seq1  AATTATCACGCACACTCATACATGTACACATGCACACACATACAAACACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCACGCACACTCATACATGTACACATGCACACACATACAAACACA  391

seq1  CACAAACATGTACACACATGCTTTTTGTATTGTTCCCCATTGTTAACCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATGTACACACATGCTTTTTGTATTGTTCCCCATTGTTAACCCT  441

seq1  TCTCACTCATGAACAAGTTTTATGAATATATCTGGATTTTCTTTCCCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCATGAACAAGTTTTATGAATATATCTGGATTTTCTTTCCCTTT  491

seq1  TTACTACTTCCATCCTTATATTCTCTTTTCAAACTATATTCATTAATATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACTTCCATCCTTATATTCTCTTTTCAAACTATATTCATTAATATT  541

seq1  TTAGGCCACCATATATGTAATATATGGAAAGCAATGTCTGGAATTGCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCACCATATATGTAATATATGGAAAGCAATGTCTGGAATTGCTCA  591

seq1  AGAAGGAATATCTAAGAACAGAATAAAATAAGGCAAAAGGCATGTGAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATATCTAAGAACAGAATAAAATAAGGCAAAAGGCATGTGAGGC  641

seq1  TTTGCTTCTCTTTGCACTAACCTAATGTTTGCCTATTTGGATTCAGAGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTCTTTGCACTAACCTAATGTTTGCCTATTTGGATTCAGAGTT  691

seq1  GTCTCTGTGGAGAAATAATGCAATTTGTATTATATCAGCCAAAGTATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGGAGAAATAATGCAATTTGTATTATATCAGCCAAAGTATTTT  741

seq1  AAAATTATTTTATAATATTTGAATGACTATGTGTACACACGCATGCTGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTATAATATTTGAATGACTATGTGTACACACGCATGCTGGT  791

seq1  CAGTCAAGCAACAAATATCTGTTAAAAGAAGAAAAGTCTGTTTTACTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGCAACAAATATCTGTTAAAAGAAGAAAAGTCTGTTTTACTTTA  841

seq1  TAGATGTGGCACATAGTAAGTTCATCACATTCAAGTGAAAGACTATGCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGGCACATAGTAAGTTCATCACATTCAAGTGAAAGACTATGCAA  891

seq1  CAAAAGTATGCAGATAGTTCCACCAGTACTTGATATGTTTAAAAGAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTATGCAGATAGTTCCACCAGTACTTGATATGTTTAAAAGAATAA  941

seq1  TAGTAAAAAAGACAACATAAAATTTAGTGAGAATGGAAGTGATGGAGGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAAAGACAACATAAAATTTAGTGAGAATGGAAGTGATGGAGGAT  991

seq1  ATGATGATATGAATGTATGAGTATAAAGAATGTATATCATCAAATGCATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATATGAATGTATGAGTATAAAGAATGTATATCATCAAATGCATA  1041

seq1  TAAATTCCCCCAAAAATAATACATTGATTTTCAGAAGATTGAAATGAAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCCCCAAAAATAATACATTGATTTTCAGAAGATTGAAATGAAGG  1091

seq1  ACATAGGCCTAGAATTC  1115
      |||||||||||||||||
seq2  ACATAGGCCTAGAATTC  1108