BAC Information

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BAC

Clone NameB6Ng01-003F03
Chromosome4 (Build37)
Map Location 17,491,252 - 17,492,181
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003F03.bB6Ng01-003F03.g
ACCDH841069DH841070
length9921,247
definitionDH841069|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F03, 5' end.DH841070|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttacctggttacagaaaacagcagttactagaagactttgctag
ggtcacctctgtagaatcagaggagaaacatttaagcagatgccttagtc
agggtttctattcctacacaaacatcatgaccaagaagcaagttggggag
gaaagggtttatttgacttacacttccatactgctattcatcaccaagga
agccaggactggaactcaagcaggtcaggaagcaggagctgatgcagaaa
ccatggagggatgttctttactggcttgcctcccctggcttgattaccaa
aaccaagattaccagcccagagatggttccaccaacaaggggcctttccc
ccttgatcactaattgagaaaatgccttacagttggatctcatggaggca
tttcctcaactgaagctcctttttctgtgttaactccagctgtgtcaagt
tgacacaaaattagccagtacagcagaatattaagaaaaataacccctag
gctacatagttgatttagaggaatatataaatctgggaatttaagaatga
gacattgttagcaccatgggtgtgggtgtacttgtttgcttatgcaaagt
acctgaaagttttacaaccactttggaaatcaattttgtgggttttcaga
aaattgggtatggttctacctcaatagctagatataccactttggagcat
atacctaaaagatgttctgccataccataggacacttgctcaactatgtt
cataccaggtttattcatggtagagaaaaactggaaacacctcagatgtc
cctctactgaagattgtataaagtaaatgttcatttccacaatgggaata
ctacacaactattagaataggacttaataaaattggtaagcatttggatg
aaatctagaattgaagaatgcataaagcatgtgacacgatcgaatactgt
cagatctcgaaaacaagacatcgtgtaatttgcacgcaaatg
gaattccagcacatttttgttttacataacttgaaagagcaattctcaag
ttcatatgagaaaacaaaagtcctaggataaccagaataatctgtacaat
aaaagaaccttaggaggaatcaatatggttgaccccaagccatactacaa
agcaatagttaaaaacactacatgttattggtacagaaacagacaggcta
atcaattgagttgaagattcagaaataaaactacactactatggatactt
aatttttgacaaacactcaaaaccagaaaaaaaaaaacacagaagaaaag
gtaacagaaaaaggaaagtatctttaacagatggtactgatctaacttgg
tttctctatgtagaaggccaatatgtttttattaataactctgcataaaa
catatgtccagttggataaagaatctcaacataaaaccttattcacgatc
tgcaggagacatcttggttcccggtgtggactacagaagctaacagcttc
tgggacaggtcctgttttgggccttcatcttctgccaggaggcaagtccg
aatgccagatatttgtgcatctgccctgaaagaggagagcctgcctgcag
agagtggtctgaccactgaaactcaggagaaagcttagtctcccaggtct
gctggtagagaataacagaatcacaagaggaacaagctctaaccagagac
aactataacaactgactccagagtttaccagatggcaaaaggcagacgta
agaatttcactaacagaaacgaagaccgctcatcatcatcagaacccagc
actcccacctcagccaggcctgggcactccaacacacctgaaaacctaga
cccagttttaaaggcatatttcatgatgatagtagacaacatcaagaaag
actttaataactcacttaaagaaatacaggagaacactgctaaatagttg
taagctcttaagaaaactaggtaatacatccaaacaggagatggaaatga
acaaaccatactagatcttaaaaggagtagacccataagaaacccaaagt
ggaggcatcgctggagatagaaaatcttggaataatctggatctagatgt
gagcatcagcacagaatacaagaatgaagagagatctcagtgcgaagatt
cttgaggactctgtccaacatcaggaatggaatgccagtctatcagctcg
agtcgacatggaacacttccgcatatggagcgatgctacagtgagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17491252_17492181
seq2: B6Ng01-003F03.b_112_1037 (reverse)

seq1  CATTTGCCTGCAAATTTCATGATGTCTTTGTTTTCAATAACTGAATAGTA  50
      ||||||| |||||||| || |||||| |||||||| | | ||| | ||||
seq2  CATTTGCGTGCAAATTACACGATGTC-TTGTTTTCGAGATCTG-ACAGTA  48

seq1  TTCGATTGTGTCACATTTATTTTATCCATTCTTCATTTCTAG-TTTCATC  99
      |||||| ||||||||  |  ||||| ||||||||| |||||| |||||||
seq2  TTCGATCGTGTCACA--TGCTTTATGCATTCTTCAATTCTAGATTTCATC  96

seq1  CAATTGCCTACCAATTTTATTATGTCCTTATTTTTAATAGTTGTGTAGTA  149
      ||| ||| |||||||||||||| |||||   || ||||||||||||||||
seq2  CAAATGCTTACCAATTTTATTAAGTCCT--ATTCTAATAGTTGTGTAGTA  144

seq1  TT-CCATTGTGGAAATGAACATTTACTTTATCCATTCTTCAGTTGAGGGA  198
      || |||||||||||||||||||||||||||| || |||||||| ||||||
seq2  TTCCCATTGTGGAAATGAACATTTACTTTATACAATCTTCAGTAGAGGGA  194

seq1  CATCTGAGGTGTTTCCAGTTTTTCTCTACCATGAATAAACCTGGTATGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGGTGTTTCCAGTTTTTCTCTACCATGAATAAACCTGGTATGAA  244

seq1  CATAGTTGAGCAAGTGTCCTATGGTATGGCAGAACATCTTTTAGGTATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTGAGCAAGTGTCCTATGGTATGGCAGAACATCTTTTAGGTATAT  294

seq1  GCTCCAAAGTGGTATATCTAGCTATTGAGGTAGAACCATACCCAATTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAAGTGGTATATCTAGCTATTGAGGTAGAACCATACCCAATTTTC  344

seq1  TGAAAACCCACAAAATTGATTTCCAAAGTGGTTGTAAAACTTTCAGGTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCCACAAAATTGATTTCCAAAGTGGTTGTAAAACTTTCAGGTAC  394

seq1  TTTGCATAAGCAAACAAGTACACCCACACCCATGGTGCTAACAATGTCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATAAGCAAACAAGTACACCCACACCCATGGTGCTAACAATGTCTC  444

seq1  ATTCTTAAATTCCCAGATTTATATATTCCTCTAAATCAACTATGTAGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAATTCCCAGATTTATATATTCCTCTAAATCAACTATGTAGCCT  494

seq1  AGGGGTTATTTTTCTTAATATTCTGCTGTACTGGCTAATTTTGTGTCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTATTTTTCTTAATATTCTGCTGTACTGGCTAATTTTGTGTCAAC  544

seq1  TTGACACAGCTGGAGTTAACACAGAAAAAGGAGCTTCAGTTGAGGAAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAGCTGGAGTTAACACAGAAAAAGGAGCTTCAGTTGAGGAAATG  594

seq1  CCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGG  644

seq1  GAAAGGCCCCTTGTTGGTGGAACCATCTCTGGGCTGGTAATCTTGGTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCCCTTGTTGGTGGAACCATCTCTGGGCTGGTAATCTTGGTTTT  694

seq1  GGTAATCAAGCCAGGGGAGGCAAGCCAGTAAAGAACATCCCTCCATGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCAAGCCAGGGGAGGCAAGCCAGTAAAGAACATCCCTCCATGGTT  744

seq1  TCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGGCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGGCTTC  794

seq1  CTTGGTGATGAATAGCAGTATGGAAGTGTAAGTCAAATAAACCCTTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGATGAATAGCAGTATGGAAGTGTAAGTCAAATAAACCCTTTCCT  844

seq1  CCCCAACTTGCTTCTTGGTCATGATGTTTGTGTAGGAATAGAAACCCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTTGCTTCTTGGTCATGATGTTTGTGTAGGAATAGAAACCCTGA  894

seq1  CTAAGGCATCTGCTTAAATGTTTCTCCTCTGA  930
      ||||||||||||||||||||||||||||||||
seq2  CTAAGGCATCTGCTTAAATGTTTCTCCTCTGA  926