BAC Information

Click to search

BAC

Clone NameB6Ng01-003F17
Chromosome4 (Build37)
Map Location 125,558,308 - 125,694,387
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003F17.bB6Ng01-003F17.g
ACCDH841096DH841097
length1,0071,053
definitionDH841096|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F17, 5' end.DH841097|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,693,386 - 125,694,387)(125,558,308 - 125,559,372)
sequence
gaattctgtcctctgtaagagcagcaagtgatttttttttaaaattattt
attttatgtatatgagtacactgtaaccatcctctgacacaccaggagag
ggcattgaatcccgagagggcattgaatcccattacagatgtttgtgagc
caccatgtggttgctgggcattgaactcaggacctctggaagagcagtca
gtacccttagccagtgagccatctctccagcctgcagcaaatgatcttaa
tgccttgagccatctctgaagttctcttaaggctgtttcaagatagcgga
tttcccaagttcaacaatctttcctgctttgcctctgagaggggaggaaa
cagatccagaggggatcaaatgacctgcttatgtcacacaactagaagct
ggggctctaatcaggccacaccctcacctctcttccagacccacctgact
cctgacgctggaacttgactctggttctggagtggaattggactctagct
gggaactgaggggcaggtaggatttgaaaggagagaagggtgtgcggagt
ggagggacctcgggagcaaaggcctgcgctcgcatgcgtgtgtaaagccc
tgcatcctggattaggtacaaccttgactctgtataaccttaatcagaac
ttgcggtcctgcttcctgggctcccattcatgccttttagcttctcagac
actccaaccccccaccccaacctgagttcctttgcattttcttttgaaaa
tctacttcctgttctgttgagtggcgcatctgaagcccctctgcccctca
cctgcatatctggccaggcatacctgctggtgggtttccttctctgcagc
ctcaaggttcttcagggagctcagtcttgttccagttaactttaactgtc
aactccatacagacaaaaatctactccctcccatccctccatcaccaaag
gagtcttcagttgagtaatctatcaggttggtctatgagcatggctgtgt
gtgtggg
gaattctgcctgccacacagcacggcctcagtaaatatcaactggatgaa
tgagtggccgagcgggtctccgtagaatttggaatttaaatgttttcctt
tatttttattttatgcaggtgggtgttttgcctatgtgtatgtgtgtatg
caggcattgtccatggagaccagaagggcgtgatagatccccaggagtta
caaatggctgtgggctgccctgttgatgttggaaatgggactgaaaccct
ttagaagaacagtgtttttatctgctgtgtatttgcaacccacatcccac
cagcccttccctcagggatcaagtctgtcttgctcacttaccctcctctc
actcttggaggctcagaaggctctcagcctccctctagccaaatatgaaa
tatctagcctagagactcggggagttgtgaaaacggaggcttttgagctg
gaagagatccaccctttcaatcccaggattgttggggttacttccatcct
gttggggagtcttctgaactttgagacactggcccaacatcgtaacccta
aactttcttccatgaccccatttctgttataacccaaactcttccccaac
ataaggagtaatattgcttcttgatgtgctaatgttctctctctctctct
ctctctctctctctctctctctcatacacacacagacacatgcagttagt
ttatcctagagtcacatccatccacgtatgccttgccataccctaggtgt
cccagcctggcctcactgttgccatcagcagtcctggctctgagatgcag
tgacccaggaccagggagggcacatttcttggagagtggcccttgggggg
tggggcagaaggaagagggtctgagcctcttctctttcccaggctcttct
tcacttgactcagacttcagatgtggttctggaagcccactatcaagtcg
tagacactgctatgggagcttaggccactcttgcccttctgatgcatgta
ctctacataccaggcaaagagagctgaaactcagaccctgagagctccta
cca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_125693386_125694387
seq2: B6Ng01-003F17.b_46_1052 (reverse)

seq1  CCCACACACACAGCCATGCTCATAGACCAACCTGATAGATTACTCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACACAGCCATGCTCATAGACCAACCTGATAGATTACTCAACTG  50

seq1  -AGACTCCTTTGGTGATGGAGGGGTGGGAGGGAGT-GGTTTTTGTCTGTA  98
       |||||||||||||||||||||| ||||||||||| | ||||||||||||
seq2  AAGACTCCTTTGGTGATGGAGGGATGGGAGGGAGTAGATTTTTGTCTGTA  100

seq1  TGGAGTTGACAGTTAAAGTTAACTGGGAC-AGACTGAGCT-CCTGAGGAA  146
      |||||||||||||||||||||||||| || |||||||||| ||||| |||
seq2  TGGAGTTGACAGTTAAAGTTAACTGGAACAAGACTGAGCTCCCTGAAGAA  150

seq1  CCTTGAGGCTGCAGAGAAGG-AACCCACCAGCAGGTATGCCTGGCCAGAT  195
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTTGAGGCTGCAGAGAAGGAAACCCACCAGCAGGTATGCCTGGCCAGAT  200

seq1  ATGCAGGTGAGGGGCAGAGGGGCTTCAGATGCGCCACTCAACAGAACAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTGAGGGGCAGAGGGGCTTCAGATGCGCCACTCAACAGAACAGG  250

seq1  AAGTAGATTTTCAAAAGAAAATGCAAAGGAACTCAGGTTGGGGTGGGGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATTTTCAAAAGAAAATGCAAAGGAACTCAGGTTGGGGTGGGGGG  300

seq1  TTGGAGTGTCTGAGAAGCTAAAAGGCATGAATGGGAGCCCAGGAAGCAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGTCTGAGAAGCTAAAAGGCATGAATGGGAGCCCAGGAAGCAGG  350

seq1  ACCGCAAGTTCTGATTAAGGTTATACAGAGTCAAGGTTGTACCTAATCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAAGTTCTGATTAAGGTTATACAGAGTCAAGGTTGTACCTAATCCA  400

seq1  GGATGCAGGGCTTTACACACGCATGCGAGCGCAGGCCTTTGCTCCCGAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGGGCTTTACACACGCATGCGAGCGCAGGCCTTTGCTCCCGAGG  450

seq1  TCCCTCCACTCCGCACACCCTTCTCTCCTTTCAAATCCTACCTGCCCCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCACTCCGCACACCCTTCTCTCCTTTCAAATCCTACCTGCCCCTC  500

seq1  AGTTCCCAGCTAGAGTCCAATTCCACTCCAGAACCAGAGTCAAGTTCCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGCTAGAGTCCAATTCCACTCCAGAACCAGAGTCAAGTTCCAG  550

seq1  CGTCAGGAGTCAGGTGGGTCTGGAAGAGAGGTGAGGGTGTGGCCTGATTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGAGTCAGGTGGGTCTGGAAGAGAGGTGAGGGTGTGGCCTGATTA  600

seq1  GAGCCCCAGCTTCTAGTTGTGTGACATAAGCAGGTCATTTGATCCCCTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCAGCTTCTAGTTGTGTGACATAAGCAGGTCATTTGATCCCCTCT  650

seq1  GGATCTGTTTCCTCCCCTCTCAGAGGCAAAGCAGGAAAGATTGTTGAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGTTTCCTCCCCTCTCAGAGGCAAAGCAGGAAAGATTGTTGAACT  700

seq1  TGGGAAATCCGCTATCTTGAAACAGCCTTAAGAGAACTTCAGAGATGGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATCCGCTATCTTGAAACAGCCTTAAGAGAACTTCAGAGATGGCT  750

seq1  CAAGGCATTAAGATCATTTGCTGCAGGCTGGAGAGATGGCTCACTGGCTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATTAAGATCATTTGCTGCAGGCTGGAGAGATGGCTCACTGGCTA  800

seq1  AGGGTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATGCCCAGCAACCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATGCCCAGCAACCA  850

seq1  CATGGTGGCTCACAAACATCTGTAATGGGATTCAATGCCCTCTCGGGATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTCACAAACATCTGTAATGGGATTCAATGCCCTCTCGGGATT  900

seq1  CAATGCCCTCTCCTGGTGTGTCAGAGGATGGTTACAGTGTACTCATATAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCTCTCCTGGTGTGTCAGAGGATGGTTACAGTGTACTCATATAC  950

seq1  ATAAAATAAATAATTTTAAAAAAAAATCACTTGCTGCTCTTACAGAGGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAATAATTTTAAAAAAAAATCACTTGCTGCTCTTACAGAGGAC  1000

seq1  AGAATTC  1002
      |||||||
seq2  AGAATTC  1007

seq1: chr4_125558308_125559372
seq2: B6Ng01-003F17.g_66_1118

seq1  GAATTCTGCCTGCCACACAGCACGGCCTCAGTAAATATCAACTGGATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGCCACACAGCACGGCCTCAGTAAATATCAACTGGATGAA  50

seq1  TGAGTGGCCGAGCGGGTCTCCGTAGAATTTGGAATTTAAATGTTTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCCGAGCGGGTCTCCGTAGAATTTGGAATTTAAATGTTTTCCTT  100

seq1  TATTTTTATTTTATGCAGGTGGGTGTTTTGCCTATGTGTATGTGTGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTTTATGCAGGTGGGTGTTTTGCCTATGTGTATGTGTGTATG  150

seq1  CAGGCATTGTCCATGGAGACCAGAAGGGCGTGATAGATCCCCAGGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTGTCCATGGAGACCAGAAGGGCGTGATAGATCCCCAGGAGTTA  200

seq1  CAAATGGCTGTGGGCTGCCCTGTTGATGTTGGAAATGGGACTGAAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCTGTGGGCTGCCCTGTTGATGTTGGAAATGGGACTGAAACCCT  250

seq1  TTAGAAGAACAGTGTTTTTATCTGCTGTGTATTTGCAACCCACATCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAACAGTGTTTTTATCTGCTGTGTATTTGCAACCCACATCCCAC  300

seq1  CAGCCCTTCCCTCAGGGATCAAGTCTGTCTTGCTCACTTACCCTCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTCCCTCAGGGATCAAGTCTGTCTTGCTCACTTACCCTCCTCTC  350

seq1  ACTCTTGGAGGCTCAGAAGGCTCTCAGCCTCCCTCTAGCCAAATATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGAGGCTCAGAAGGCTCTCAGCCTCCCTCTAGCCAAATATGAAA  400

seq1  TATCTAGCCTAGAGACTCGGGGAGTTGTGAAAACGGAGGCTTTTGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGCCTAGAGACTCGGGGAGTTGTGAAAACGGAGGCTTTTGAGCTG  450

seq1  GAAGAGATCCACCCTTTCAATCCCAGGATTGTTGGGGTTACTTCCATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATCCACCCTTTCAATCCCAGGATTGTTGGGGTTACTTCCATCCT  500

seq1  GTTGGGGAGTCTTCTGAACTTTGAGACACTGGCCCAACATCGTAACCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGAGTCTTCTGAACTTTGAGACACTGGCCCAACATCGTAACCCTA  550

seq1  AACTTTCTTCCATGACCCCATTTCTGTTATAACCCAAACTCTTCCCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTCCATGACCCCATTTCTGTTATAACCCAAACTCTTCCCCAAC  600

seq1  ATAAGGAGTAATATTGCTTCTTGATGTGCTAATGTTCTCTCTCTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGTAATATTGCTTCTTGATGTGCTAATGTTCTCTCTCTCTCTCT  650

seq1  CTCTCTCTCTCTCTCTCTCTCTCATACACACACAGACACATGCAGTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCATACACACACAGACACATGCAGTTAGT  700

seq1  TTATCCTAGAGTCACATCCATCCACGTATGCCTTGCCATACCCTAGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAGAGTCACATCCATCCACGTATGCCTTGCCATACCCTAGGTGT  750

seq1  CCCAGCCTGGCCTCACTGTTGCCATCAGCAGTCCTGGCTCTGAGATGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTGGCCTCACTGTTGCCATCAGCAGTCCTGGCTCTGAGATGCAG  800

seq1  TGACCCAGGACCAGGGAGGGCACA-TTCTTGGAGAGTGGCCCTTGGGGGG  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACCCAGGACCAGGGAGGGCACATTTCTTGGAGAGTGGCCCTTGGGGGG  850

seq1  TGGGGCAGAAGGAAGAGGGTCTGAGCCTCTTCTCTTTCCCAAGCCCTTCT  899
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TGGGGCAGAAGGAAGAGGGTCTGAGCCTCTTCTCTTTCCCAGGCTCTTCT  900

seq1  TCACCTGACCCAGACCTCAGATGTGGGTTCCTGGAAGCCCACTATCAAGT  949
      |||| |||| ||||| ||||||||||  | ||||||||||||||||||||
seq2  TCACTTGACTCAGACTTCAGATGTGG--TTCTGGAAGCCCACTATCAAGT  948

seq1  CGTAGACAACTGCTATGGGAGCCTAAGGCCACTCTTGCCCTTCCTGATGG  999
      ||||||| ||||||||||||| || ||||||||||||||||| ||||| |
seq2  CGTAGAC-ACTGCTATGGGAG-CTTAGGCCACTCTTGCCCTT-CTGAT-G  994

seq1  CATGTACTTCCTACATACCAGGCAAAGGAGAGCCAGAAAACTCAGGACCC  1049
      ||||||||  |||||||||||||||| ||||||    ||||||| |||||
seq2  CATGTACT--CTACATACCAGGCAAA-GAGAGC--TGAAACTCA-GACCC  1038

seq1  TGAGAAGCTCCTACCA  1065
      |||| |||||||||||
seq2  TGAG-AGCTCCTACCA  1053