BAC Information

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BAC

Clone NameB6Ng01-003M04
Chromosome4 (Build37)
Map Location 129,068,892 - 129,130,311
singlet/doubletdoublet
Overlap geneZbtb8
Upstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588
Downstream geneBsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003M04.bB6Ng01-003M04.g
ACCDH841370DH841371
length1,030503
definitionDH841370|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M04, 5' end.DH841371|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,068,892 - 129,069,928)(129,129,809 - 129,130,311)
sequence
gaattcactctgtagaccaggctggcctcgaactcagaaatctgcctgcc
tctgcctcccaagtgctgggattaaagatgtgcaccaccatgcccgaccc
tgccatgtatcttttaaggcctgcttgtggatgaaatatgttccctgtcc
actcttcaggcttggtgtatgatactggatccagtgacgtcataagcaat
gacagcatgcttgtcctgagcagaagaatgaagatgcaccatggagagtc
ccatcatccctcttgcctttcctctctgctataatgtgatttgcccccca
cccccacccccagatgttaacaagtcagttcctgataggctaccaacaga
ccaaagaaacaagtccactgaagtacaatgtggttcaaaaaggagtttat
tgggattattaatgggaccatgggtgaggggttacttacagtgattccaa
aaagtctacattctggaaagtccccttccattgcggatcataacaccatg
aaagcctcaccgtggaatccctccttttagttaaccatctgcctctctac
actggagcaccccctccattcccttccagatcatctgcaggtggggggag
gggcaggaaggacaagtgggtggagcaaacttcaccctcctcctactaag
cagtgttagcagctcacaacagttaccctaaacctaattactgctattat
gtggtacccgggctcatcgcaagtcccaggttctgcctctctttgctggc
agtgtctggatactgccaatttaccagctcagagaggagatcagtgacag
gggtctgatgtccacatctcccctcagggcatctgtatgccaggcaagag
agggaaagcagagcccaagacaaacaggatctggtccattgggagcgagt
gccagacccagaggggcagaagagaaggccttctttgaagtcgtagtcgc
aacttgtttagcaaaggccttccctgtggcatcattatgaagcagctctt
tgacatgatcattgctggctattttgcttg
gaattcaagttctggaacaaacagcctagagacgttagtgtcggagaggg
agaaggaggagaggaaaattatttaaaatatgtaaatacaccgggaaagg
atcttcaggtgcaggcggtgaaactgtatcagcccaacccccccaagacc
aagacagaggtttatctgctcctgaggggtagaggtcagggaataagaga
cacagacaggggataaaggagaagggagaagggagcaagggagcaaggga
gaggggcaggaggtacctatcctggggtgggagttgtgggtagtggggag
actaaaaaggactgtcttagataggagacagatcggcacagaagaaaatg
gctgtaaataaaggccccaggggaaaccctatgctgggaagagggattta
attttgactggaaatgcttattatgtgaacctaaaagggtctttattagg
gagcggctaaacattaaatgaataaccttactgggcagcctcaggaagag
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129068892_129069928
seq2: B6Ng01-003M04.b_40_1068

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGATGTGCACCACCATGCCCGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGATGTGCACCACCATGCCCGACCC  100

seq1  TGCCATGTATCTTTTAAGGCCTGCTTGTGGATGAAATATGTTCCCTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTATCTTTTAAGGCCTGCTTGTGGATGAAATATGTTCCCTGTCC  150

seq1  ACTCTTCAGGCTTGGTGTATGATACTGGATCCAGTGACGTCATAAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAGGCTTGGTGTATGATACTGGATCCAGTGACGTCATAAGCAAT  200

seq1  GACAGCATGCTTGTCCTGAGCAGAAGAATGAAGATGCACCATGGAGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATGCTTGTCCTGAGCAGAAGAATGAAGATGCACCATGGAGAGTC  250

seq1  CCATCATCCCTCTTGCCTTTCCTCTCTGCTATAATGTGATTTGCCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCCCTCTTGCCTTTCCTCTCTGCTATAATGTGATTTGCCCCCCA  300

seq1  CCCCCACCCCCAGATGTTAACAAGTCAGTTCCTGATAGGCTACCAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCAGATGTTAACAAGTCAGTTCCTGATAGGCTACCAACAGA  350

seq1  CCAAAGAAACAAGTCCACTGAAGTACAATGTGGTTCAAAAAGGAGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAACAAGTCCACTGAAGTACAATGTGGTTCAAAAAGGAGTTTAT  400

seq1  TGGGATTATTAATGGGACCATGGGTGAGGGGTTACTTACAGTGATTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTATTAATGGGACCATGGGTGAGGGGTTACTTACAGTGATTCCAA  450

seq1  AAAGTCTACATTCTGGAAAGTCCCCTTCCATTGCGGATCATAACACCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTACATTCTGGAAAGTCCCCTTCCATTGCGGATCATAACACCATG  500

seq1  AAAGCCTCACCGTGGAATCCCTCCTTTTAGTTAACCATCTGCCTCTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCACCGTGGAATCCCTCCTTTTAGTTAACCATCTGCCTCTCTAC  550

seq1  ACTGGAGCACCCCCTCCATTCCCTTCCAGATCATCTGCAGGTGGGGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCACCCCCTCCATTCCCTTCCAGATCATCTGCAGGTGGGGGGAG  600

seq1  GGGCAGGAAGGACAAGTGGGTGGAGCAAACTTCACCCTCCTCCTACTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAAGGACAAGTGGGTGGAGCAAACTTCACCCTCCTCCTACTAAG  650

seq1  CAGTGTTAGCAGCTCACAACAGTTACCCTAAACCTAATTACTGCTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAGCAGCTCACAACAGTTACCCTAAACCTAATTACTGCTATTAT  700

seq1  GTGGTACCCGGGCTCATCGCAGGTCCCAGGTTCTGCCTCTCTTTGCTGGC  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGGTACCCGGGCTCATCGCAAGTCCCAGGTTCTGCCTCTCTTTGCTGGC  750

seq1  AGTGTCTGGATACTGCCAATTTACCAGCTCAGAGAGGAGATCAGGGACAG  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTGTCTGGATACTGCCAATTTACCAGCTCAGAGAGGAGATCAGTGACAG  800

seq1  GGGTCTGAGGTCCACATCTCCCCTCAGGGCATCTGTATGCCAGGCAAGAG  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGATGTCCACATCTCCCCTCAGGGCATCTGTATGCCAGGCAAGAG  850

seq1  AGGGAAAGCAGAGCCCAAGACAAACAGGATCTGGTCCATTGGGAGCGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCAGAGCCCAAGACAAACAGGATCTGGTCCATTGGGAGCGAGT  900

seq1  GCCAAGACCCAGAGGGGCAGAAGAGAAAGGCCTTCTTTGGAAGTCGTAGG  950
      ||| ||||||||||||||||||||| |||||||||||| ||||||||| |
seq2  GCC-AGACCCAGAGGGGCAGAAGAG-AAGGCCTTCTTT-GAAGTCGTA-G  946

seq1  TCGCAGCTTGTTTAAGCAAAGGCCTTCCCTGTGGCAATCTTTAATGAAGC  1000
      ||||| ||||||| ||||||||||||||||||||| ||| || |||||||
seq2  TCGCAACTTGTTT-AGCAAAGGCCTTCCCTGTGGC-ATCATT-ATGAAGC  993

seq1  AGCTCTCTGACATGATCCTTGCTGGCTAATATTGCTT  1037
      |||||| |||||||||| ||||||||| || ||||||
seq2  AGCTCTTTGACATGATCATTGCTGGCT-ATTTTGCTT  1029

seq1: chr4_129129809_129130311
seq2: B6Ng01-003M04.g_67_569 (reverse)

seq1  TTCCTCCTCCTGAGGCTGCCCACTAAGGTTCTGCTATCAAAGTACTGAAG  50
      |||||| ||||||||||||||| ||||||| | |  | || ||   |  |
seq2  TTCCTCTTCCTGAGGCTGCCCAGTAAGGTTATTCATTTAATGTTTAGCCG  50

seq1  CTCAGTAATAAAAAGCCCTTCTGGCTCACCTAATTAACATTTCCAATCAA  100
      |||  ||||||| | || ||  || |||| |||| | |||||||| ||||
seq2  CTCCCTAATAAAGACCCTTTTAGGTTCACATAATAAGCATTTCCAGTCAA  100

seq1  AATTAAATACCTCTTCCCAGCATAGGGTTTCCCCTTGTACCTTTATAAAC  150
      |||||||| |||||||||||||||||||||||||| |  |||||||  ||
seq2  AATTAAATCCCTCTTCCCAGCATAGGGTTTCCCCTGGGGCCTTTATTTAC  150

seq1  AGCCATTTTCCTATGTGCCACTCTGTCTCCTATCTAAGACAGTCCTTTTT  200
      |||||||||| | ||||||  |||||||||||||||||||||||||||||
seq2  AGCCATTTTCTTCTGTGCCGATCTGTCTCCTATCTAAGACAGTCCTTTTT  200

seq1  AGTCTCCCCACTACCCACAACTCCCACCCCAGGATAGGTACCTCCTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCCACTACCCACAACTCCCACCCCAGGATAGGTACCTCCTGCCC  250

seq1  CTCTCCCTTGCTCCCTTGCTCCCTTCTCCCTTCTCCTTTATCCCCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTGCTCCCTTGCTCCCTTCTCCCTTCTCCTTTATCCCCTGTCT  300

seq1  GTGTCTCTTATTCCCTGACCTCTACCCCTCAGGAGCAGATAAACCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTTATTCCCTGACCTCTACCCCTCAGGAGCAGATAAACCTCTGT  350

seq1  CTTGGTCTTGGGGGGGTTGGGCTGATACAGTTTCACCGCCTGCACCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTTGGGGGGGTTGGGCTGATACAGTTTCACCGCCTGCACCTGAA  400

seq1  GATCCTTTCCCGGTGTATTTACATATTTTAAATAATTTTCCTCTCCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTCCCGGTGTATTTACATATTTTAAATAATTTTCCTCTCCTCCT  450

seq1  TCTCCCTCTCCGACACTAACGTCTCTAGGCTGTTTGTTCCAGAACTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTCCGACACTAACGTCTCTAGGCTGTTTGTTCCAGAACTTGAA  500

seq1  TTC  503
      |||
seq2  TTC  503