BAC Information

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BAC

Clone NameB6Ng01-004I02
Chromosome4 (Build37)
Map Location 73,972,582 - 74,031,951
singlet/doubletdoublet
Overlap geneJmjd2c
Upstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774
Downstream geneLOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004I02.bB6Ng01-004I02.g
ACCDH841894DH841895
length1,094721
definitionDH841894|Mus musculus domesticus DNA, BAC clone: B6Ng01-004I02, 5' end.DH841895|Mus musculus domesticus DNA, BAC clone: B6Ng01-004I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,030,847 - 74,031,951)(73,972,582 - 73,973,276)
sequence
gaattcctcaaggccaagtggtttgttggtttgcacttctccttcagcca
tatgtcaagagtatacacagggctgagaaaagaacagaaaatcctgatat
ggagattattattttaaaacgtatttcagcattagcatgaggtctgttta
tgagagaaggcaatctttatggtatcagaattaatgggccttgacatctg
ggagctttgaatgcataagtaaatgtttctttaggaagttttcttcttgg
ttcctctaaagttagataccatgaaaaaagcagaaaagccaataactaaa
aacaagagtggggggcctggagagatggctcagtggttaaagagcactgg
ctgctctcccaaaagtcctgagttcaaatcccagcaaccacatggtggct
cacaaccacccgtaatgagatgagatctgatgccctcttctggagtgtct
gaagacaactacaatgtacttacatgtaataataaataaatcttttaaaa
aacaaaacaaaacaaacaaacaaaaccccccacaagactggtactgggga
accagcctgttttaaggggctgtgggaatagggccaggcagcagcaggta
cagtgaggttggtctgggggttgccctctgcagtactggggaaactctct
gcatcttttgagcttgagagtatggaggaaacagaattgccttctctgag
acagattaccttccttctctgtctgtcaagttccaatattggtgggaggg
aaagtcaaaactctctggaaagggtgatcattgggttttacaataacata
ctaaatatatcctcagggcctggcactgaccattaggtaaacaggtttaa
gacaacaacaccaacaacaacaacaaaaaaccacccaactttttcctaat
tctttcgctaaagggattcagatctagtttggtactcaaacatacatcag
aatgcacatagcataggaatatgcaatcacagtgatggatggggactggg
aactcactatccatgactcagcttctatatatactacacatgttacaagt
acacggattatcaatatactggggcagaaaagaactccagttta
gaattcaaacacatcaattattttttcctagaatttctgacagagctcta
catgaaggaatttgagggtaatgagactgtataagaacttgtccattttc
tgaatggggtttgtatttctgacctgagaatgtatttagtgaagacttag
aatcctgctactattgaaatgcacctctacttgtttttatgaagttgagt
atttatttgtttctttaggcccatggtcttgtatagtccaggctgtcctt
gcactacctgtgtagttgaggttgatctttatcttgtgatccccaggctt
cagtttttaccccgtgagtgagggaattacaggtatgaggtgccagtcct
ggtactaggacagagcaaggaaatgatttcatccaaggccagtatagtga
acaagtgattttctttggactatctacaggagtatggctgactcataggc
aacttaccagccaacttatcccagcgttggggatgcagcccctgaaggct
tcttccttaaggcttcttgtgtaagttgttagaaactgggtcagtaggag
cagttcctctccttggttacttggttactgcttttgtaactttttggatg
agccttatgataattttctgagccttgtaagtttgcttacttcttgtgtc
ttagcaacttctctctctctctctctctctctctctctctctctcactca
cacacacacacacacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_74030847_74031951
seq2: B6Ng01-004I02.b_46_1139 (reverse)

seq1  TAAACTGGGAGTTTCTTTTCTGCCCCAGTATATTTGATAATCTGTGTACC  50
      |||||| |||| |||||||||||||||||||| ||||||||| |||||| 
seq2  TAAACT-GGAG-TTCTTTTCTGCCCCAGTATA-TTGATAATCCGTGTAC-  46

seq1  TTTGT-ACATGGTTGTAGTTATATTATAGAAGGCTGAGTCATGGATAGTG  99
       |||| |||||  ||||| |||| ||||||| ||||||||||||||||||
seq2  -TTGTAACATG--TGTAG-TATA-TATAGAA-GCTGAGTCATGGATAGTG  90

seq1  AGTTCCCAGTCCCCATCCATCACTGTGATTGCATATTTCCTTATGCTATG  149
      |||||||||||||||||||||||||||||||||||||  | |||||||||
seq2  AGTTCCCAGTCCCCATCCATCACTGTGATTGCATATT--CCTATGCTATG  138

seq1  TGCATTCTGATGTATGTTTGAGTACCAAACTAGATCTGAATCCCTTTAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTGATGTATGTTTGAGTACCAAACTAGATCTGAATCCCTTTAGC  188

seq1  GAAAGAATTAGGAAAAAGTTGGGTGGTTTTTTGTTGTTGTTGTTGGTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTAGGAAAAAGTTGGGTGGTTTTTTGTTGTTGTTGTTGGTGTT  238

seq1  GTTGTCTTAAACCTGTTTACCTAATGGTCAGTGCCAGGCCCTGAGGATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTAAACCTGTTTACCTAATGGTCAGTGCCAGGCCCTGAGGATAT  288

seq1  ATTTAGTATGTTATTGTAAAACCCAATGATCACCCTTTCCAGAGAGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTATGTTATTGTAAAACCCAATGATCACCCTTTCCAGAGAGTTTT  338

seq1  GACTTTCCCTCCCACCAATATTGGAACTTGACAGACAGAGAAGGAAGGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCCTCCCACCAATATTGGAACTTGACAGACAGAGAAGGAAGGTA  388

seq1  ATCTGTCTCAGAGAAGGCAATTCTGTTTCCTCCATACTCTCAAGCTCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTCAGAGAAGGCAATTCTGTTTCCTCCATACTCTCAAGCTCAAA  438

seq1  AGATGCAGAGAGTTTCCCCAGTACTGCAGAGGGCAACCCCCAGACCAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGAGAGTTTCCCCAGTACTGCAGAGGGCAACCCCCAGACCAACC  488

seq1  TCACTGTACCTGCTGCTGCCTGGCCCTATTCCCACAGCCCCTTAAAACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTACCTGCTGCTGCCTGGCCCTATTCCCACAGCCCCTTAAAACAG  538

seq1  GCTGGTTCCCCAGTACCAGTCTTGTGGGGGGTTTTGTTTGTTTGTTTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTCCCCAGTACCAGTCTTGTGGGGGGTTTTGTTTGTTTGTTTTGT  588

seq1  TTTGTTTTTTAAAAGATTTATTTATTATTACATGTAAGTACATTGTAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTAAAAGATTTATTTATTATTACATGTAAGTACATTGTAGTT  638

seq1  GTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATCTCATTACGGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATCTCATTACGGGTG  688

seq1  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACTTTTGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACTTTTGGGA  738

seq1  GAGCAGCCAGTGCTCTTTAACCACTGAGCCATCTCTCCAGGCCCCCCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCAGTGCTCTTTAACCACTGAGCCATCTCTCCAGGCCCCCCACT  788

seq1  CTTGTTTTTAGTTATTGGCTTTTCTGCTTTTTTCATGGTATCTAACTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTAGTTATTGGCTTTTCTGCTTTTTTCATGGTATCTAACTTTA  838

seq1  GAGGAACCAAGAAGAAAACTTCCTAAAGAAACATTTACTTATGCATTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACCAAGAAGAAAACTTCCTAAAGAAACATTTACTTATGCATTCAA  888

seq1  AGCTCCCAGATGTCAAGGCCCATTAATTCTGATACCATAAAGATTGCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAGATGTCAAGGCCCATTAATTCTGATACCATAAAGATTGCCTT  938

seq1  CTCTCATAAACAGACCTCATGCTAATGCTGAAATACGTTTTAAAATAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATAAACAGACCTCATGCTAATGCTGAAATACGTTTTAAAATAATA  988

seq1  ATCTCCATATCAGGATTTTCTGTTCTTTTCTCAGCCCTGTGTATACTCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATATCAGGATTTTCTGTTCTTTTCTCAGCCCTGTGTATACTCTT  1038

seq1  GACATATGGCTGAAGGAGAAGTGCAAACCAACAAACCACTTGGCCTTGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGGCTGAAGGAGAAGTGCAAACCAACAAACCACTTGGCCTTGAG  1088

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1094

seq1: chr4_73972582_73973276
seq2: B6Ng01-004I02.g_66_760

seq1  GAATTCAAACACATCAATTATTTTTTCCTAGAATTTCTGACAGAGCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACATCAATTATTTTTTCCTAGAATTTCTGACAGAGCTCTA  50

seq1  CATGAAGGAATTTGAGGGTAATGAGACTGTATAAGAACTTGTCCATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGAATTTGAGGGTAATGAGACTGTATAAGAACTTGTCCATTTTC  100

seq1  TGAATGGGGTTTGTATTTCTGACCTGAGAATGTATTTAGTGAAGACTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGGTTTGTATTTCTGACCTGAGAATGTATTTAGTGAAGACTTAG  150

seq1  AATCCTGCTACTATTGAAATGCACCTCTACTTGTTTTTATGAAGTTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCTACTATTGAAATGCACCTCTACTTGTTTTTATGAAGTTGAGT  200

seq1  ATTTATTTGTTTCTTTAGGCCCATGGTCTTGTATAGTCCAGGCTGTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGTTTCTTTAGGCCCATGGTCTTGTATAGTCCAGGCTGTCCTT  250

seq1  GCACTACCTGTGTAGTTGAGGTTGATCTTTATCTTGTGATCCCCAGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACCTGTGTAGTTGAGGTTGATCTTTATCTTGTGATCCCCAGGCTT  300

seq1  CAGTTTTTACCCCGTGAGTGAGGGAATTACAGGTATGAGGTGCCAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTACCCCGTGAGTGAGGGAATTACAGGTATGAGGTGCCAGTCCT  350

seq1  GGTACTAGGACAGAGCAAGGAAATGATTTCATCCAAGGCCAGTATAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAGGACAGAGCAAGGAAATGATTTCATCCAAGGCCAGTATAGTGA  400

seq1  ACAAGTGATTTTCTTTGGACTATCTACAGGAGTATGGCTGACTCATAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGATTTTCTTTGGACTATCTACAGGAGTATGGCTGACTCATAGGC  450

seq1  AACTTACCAGCCAACTTATCCCAGCGTTGGGGATGCAGCCCCTGAAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCAGCCAACTTATCCCAGCGTTGGGGATGCAGCCCCTGAAGGCT  500

seq1  TCTTCCTTAAGGCTTCTTGTGTAAGTTGTTAGAAACTGGGTCAGTAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTAAGGCTTCTTGTGTAAGTTGTTAGAAACTGGGTCAGTAGGAG  550

seq1  CAGTTCCTCTCCTTGGTTACTTGGTTACTGCTTTTGTAACTTTTTGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTCTCCTTGGTTACTTGGTTACTGCTTTTGTAACTTTTTGGATG  600

seq1  AGCCTTATGATAATTTTCTGAGCCTTGTAAGTTTGCTTACTTCTTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATGATAATTTTCTGAGCCTTGTAAGTTTGCTTACTTCTTGTGTC  650

seq1  TTAGCAACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  695
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  695