BAC Information

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BAC

Clone NameB6Ng01-006I10
Chromosome4 (Build37)
Map Location 95,276,177 - 95,403,167
singlet/doubletdoublet
Overlap gene2310009E04Rik
Upstream geneLrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006I10.bB6Ng01-006I10.g
ACCDH843360DH843361
length1,1281,084
definitionDH843360|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I10, 5' end.DH843361|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,276,177 - 95,277,330)(95,402,069 - 95,403,167)
sequence
gaattccttggtcactggctgtgagtccacgccaaactctctcacactct
gggtcttttttttttcttcttcttctttctggaaaacctataataatttt
cactttacttgaatgcatactaattgcctaagacttagattcaccttttc
ctgggagccatacctggctttctccatttagtgttgactggtaccctgct
ctatgtcctgtgcagcatcctttgtgttatccctactctcataatgatta
tacttcatcatatccaacttatccatgtgtgtctagtatctagagctctg
ctgagtagctccaggtaataacatagtaaatacttgcattcatgaatatg
ggtgagggcattcaattatgaattatgccatattttattgctgggcatat
gcatacattccaaagtaaagatctgctgcatgctcaagttaactttattt
tctctttcccattatagaaaatgagggttggagggttatagaccctttcc
acctgggcccaggccttggctgcccgtctgttaccacactcaggggctta
tcttccaagtgaagttgatacaggctctggggaaaaggttagggttaggg
tcctgtacccctctcttatgctcttgtacgttagaaatgaatgactgctc
ccttaattttttcctattttttttctccaggtgaagctaaaactcatctg
ctaatctataagtctttctctaggatgcttgtaccacacctctgtacacc
aggaccagatacctcagcatttgaaccttgtattttttagtattaccctg
gggtatctgctgtgaactggcattgaagaaacatacaacagggaaaccat
aaacttgagctccttcccaaattatatatctgacttatgctaagtaagtt
ctaagttttatatttatcattcaacaaaatgactgaaaatgtttatagag
ctagttctattaaatgaccatttgatcccatataaccgttctgtccgacc
taaaatttaagtaaatacaactataaaacaaaagccatttagtctcaagt
ttagatccaagtaaactaacattccagaatatctgagatggtcctagttc
tctactatacaaatacgccctagaaatt
gaattctcttattcagaaaggaaaagctgactggtctaaaagattgaggg
tgcagactgtgaccaactgccaagctcaagtctcttgaatatcttcaact
gcatattctttctgaagggcccctgccctatgactcagagaaggagggaa
tcgtgctatgagccgctcaccctacaactctgctgaactggtcaaagtga
tgtggaattatatccactgatagtctcctccatcaccgataaccattctc
agtcaacaactgacaccacatccgtctcagctctgttcccagacaattca
gcccagggctgtaagccagccttccaaggctagtgataggaataaaagtt
aatgttcaccatgatgaaaatccctccttggaaccacagtgttcaggagt
caaccatctaaccccaaacaagaaggaactctgtttttccaaaccaaaaa
ggcacaacatgaaacaggaaggtggaaataggtattgtgagaattcaaga
aatctctcttccacatctacgttttctcagccagaagcaccatagaaaga
ctagggctgttagatgcagcctgataacttgcccaaaagtttttattcac
cagaaaattgaataagccacagcattgttcttcccagagctaatcaagat
gtccctgactcagcatctgcaatctcttctatgctttgtcaaaccactct
ctcatatgtttcacaaaccagataaataccatgcatagaagatgctccat
accgatttttacctaccttgtgccaagttctagatgttggaaagcagccc
ctacgattttaaaagattcacactgaagtctaaaactaagggttttggga
aactaagatagtaaaccatggagaagatctcagaaaggtggaatgtgtgt
tgatgtgcttaaagaaatgaggagggcttcctagactgacctcaagaatg
aatgacatcttcaaggtaaagataaccatagaggtcttggatgactccaa
agtgattatagatgctatcatactaattagatgttccaaagtagctctat
caagaaatgttgctcactgtagggagctagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_95276177_95277330
seq2: B6Ng01-006I10.b_43_1170

seq1  GAATTCCTTGGTCACTGGCTGTGAGTCCACGCCAAACTCTCTCACACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGTCACTGGCTGTGAGTCCACGCCAAACTCTCTCACACTCT  50

seq1  GGGTCTTTTTTTTTTCTTCTTCTTCTTTCTGGAAAACCTATAATAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTTTTTTTTCTTCTTCTTCTTTCTGGAAAACCTATAATAATTTT  100

seq1  CACTTTACTTGAATGCATACTAATTGCCTAAGACTTAGATTCACCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTACTTGAATGCATACTAATTGCCTAAGACTTAGATTCACCTTTTC  150

seq1  CTGGGAGCCATACCTGGCTTTCTCCATTTAGTGTTGACTGGTACCCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGCCATACCTGGCTTTCTCCATTTAGTGTTGACTGGTACCCTGCT  200

seq1  CTATGTCCTGTGCAGCATCCTTTGTGTTATCCCTACTCTCATAATGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCTGTGCAGCATCCTTTGTGTTATCCCTACTCTCATAATGATTA  250

seq1  TACTTCATCATATCCAACTTATCCATGTGTGTCTAGTATCTAGAGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCATCATATCCAACTTATCCATGTGTGTCTAGTATCTAGAGCTCTG  300

seq1  CTGAGTAGCTCCAGGTAATAACATAGTAAATACTTGCATTCATGAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGCTCCAGGTAATAACATAGTAAATACTTGCATTCATGAATATG  350

seq1  GGTGAGGGCATTCAATTATGAATTATGCCATATTTTATTGCTGGGCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGCATTCAATTATGAATTATGCCATATTTTATTGCTGGGCATAT  400

seq1  GCATACATTCCAAAGTAAAGATCTGCTGCATGCTCAAGTTAACTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATTCCAAAGTAAAGATCTGCTGCATGCTCAAGTTAACTTTATTT  450

seq1  TCTCTTTCCCATTATAGAAAATGAGGGTTGGAGGGTTATAGACCCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCCATTATAGAAAATGAGGGTTGGAGGGTTATAGACCCTTTCC  500

seq1  ACCTGGGCCCAGGCCTTGGCTGCCCGTCTGTTACCACACTCAGGGGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCCCAGGCCTTGGCTGCCCGTCTGTTACCACACTCAGGGGCTTA  550

seq1  TCTTCCAAGTGAAGTTGATACAGGCTCTGGGGAAAAGGTTAGGGTTAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAGTGAAGTTGATACAGGCTCTGGGGAAAAGGTTAGGGTTAGGG  600

seq1  TCCTGTACCCCTCTCTTATGCTCTTGTACGTTAGAAATGAATGACTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTACCCCTCTCTTATGCTCTTGTACGTTAGAAATGAATGACTGCTC  650

seq1  CCTTAATTTTTTCCTATTTTTTTTCTCCAGGTGAAGCTAAAACTCATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTTTTTCCTATTTTTTTTCTCCAGGTGAAGCTAAAACTCATCTG  700

seq1  CTAATCTATAAGTCTTTCTCTAGGATGCTTGTACCACACCTCTGTACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTATAAGTCTTTCTCTAGGATGCTTGTACCACACCTCTGTACACC  750

seq1  AGGACCAGATACCTCAGCATTTGAACCTTGTATTTTTTAGTATTACCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGATACCTCAGCATTTGAACCTTGTATTTTTTAGTATTACCCTG  800

seq1  GGGTATCTGCTGTGAACTGGCATTGAAGAAACATACAACAGGGAAACCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCTGCTGTGAACTGGCATTGAAGAAACATACAACAGGGAAACCAT  850

seq1  AAACTTGAGCTCCTTCCCAAATTTATATATCTGACTTATGCTAAGTAAGT  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAACTTGAGCTCCTTCCCAAA-TTATATATCTGACTTATGCTAAGTAAGT  899

seq1  TCTAAGTTTTATATTTTATCATTCAACAGAATGACTGAAAAATGTTTATA  950
      ||||||||||||| |||||||||||||| |||||||| ||||||||||||
seq2  TCTAAGTTTTATA-TTTATCATTCAACAAAATGACTG-AAAATGTTTATA  947

seq1  GAGCTAGTTCTTATTAAATGAACAATTTGGATCCCATATAACCGTTCTGT  1000
      |||||||||| |||||||||| ||  || |||||||||||||||||||||
seq2  GAGCTAGTTC-TATTAAATGACCA--TTTGATCCCATATAACCGTTCTGT  994

seq1  CCGACCTAAAATTTTAAGGTAAATACAAACTATAAAACAAAAAGCCATTT  1050
      ||||||||||||||  | |||||||| ||||||||||| |||||||||||
seq2  CCGACCTAAAATTT--AAGTAAATAC-AACTATAAAAC-AAAAGCCATTT  1040

seq1  AGTTCTCAAAGTTTAGATCCAAAGTTAAACTTACATTTCGAGAATTATCC  1100
      || |||| ||||||||||||||   |||||| ||| ||| |||| |||| 
seq2  AG-TCTC-AAGTTTAGATCCAA--GTAAACTAACA-TTCCAGAA-TATC-  1083

seq1  TTGAGAGTGTGGTCTTAAGTTTTCTTCTACTATACAAATACCAGCCTAGA  1150
       |||||   ||||| | ||||    ||||||||||||||| |  ||||||
seq2  -TGAGA---TGGTCCT-AGTT---CTCTACTATACAAATA-CGCCCTAGA  1124

seq1  AACT  1154
      || |
seq2  AATT  1128

seq1: chr4_95402069_95403167
seq2: B6Ng01-006I10.g_68_1151 (reverse)

seq1  CCCTCTAGGCTCCCTACAGTGAGCCACCATTTCTTTTGATAGAGCTACTT  50
      ||||||| ||||||||||||||| || ||||||  |||||||||||||||
seq2  CCCTCTA-GCTCCCTACAGTGAG-CAACATTTC--TTGATAGAGCTACTT  46

seq1  TCTGGAACATTCTAATTCTAGTATGATAGCATCTATTATTCACCTTTGGA  100
        ||||||| ||||||  ||||||||||||||||| || ||| |||||| 
seq2  --TGGAACA-TCTAAT--TAGTATGATAGCATCTA-TAATCA-CTTTGG-  88

seq1  AGTCATTCCAAGCACTTCCTATGTGTTATCTTTACCTTGAAGATGTCATT  150
      ||||| ||||||  ||  ||||| ||||||||||||||||||||||||||
seq2  AGTCA-TCCAAGACCT--CTATG-GTTATCTTTACCTTGAAGATGTCATT  134

seq1  CATTCTCTGAGGTCAGTCTAGGAAGCCCTCCTCATTTCTTTAAGCACATC  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCT-TGAGGTCAGTCTAGGAAGCCCTCCTCATTTCTTTAAGCACATC  183

seq1  -ACACACATTCCACCTTTCTGAGATCTTCTCCATGGTTTACTATCTTAGT  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATTCCACCTTTCTGAGATCTTCTCCATGGTTTACTATCTTAGT  233

seq1  TTCCC-AAACCCTTAGTTTTAGACTTCAGTGTGAATCTTTTAAAATCGTA  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAACCCTTAGTTTTAGACTTCAGTGTGAATCTTTTAAAATCGTA  283

seq1  GGGGCTGCTTTCCAACATCTAGAACTTGGCACAAGGTAGGTAAAAATCGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCTTTCCAACATCTAGAACTTGGCACAAGGTAGGTAAAAATCGG  333

seq1  TATGGAGCATCTTCTATGCATGGTATTTATCTGGTTTGTGAAACATATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGCATCTTCTATGCATGGTATTTATCTGGTTTGTGAAACATATGA  383

seq1  GAGAGTGGTTTGACAAAGCATAGAAGAGATTGCAGATGCTGAGTCAGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGGTTTGACAAAGCATAGAAGAGATTGCAGATGCTGAGTCAGGGA  433

seq1  CATCTTGATTAGCTCTGGGAAGAACAATGCTGTGGCTTATTCAATTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGATTAGCTCTGGGAAGAACAATGCTGTGGCTTATTCAATTTTCT  483

seq1  GGTGAATAAAAACTTTTGGGCAAGTTATCAGGCTGCATCTAACAGCCCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATAAAAACTTTTGGGCAAGTTATCAGGCTGCATCTAACAGCCCTA  533

seq1  GTCTTTCTATGGTGCTTCTGGCTGAGAAAACGTAGATGTGGAAGAGAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTATGGTGCTTCTGGCTGAGAAAACGTAGATGTGGAAGAGAGAT  583

seq1  TTCTTGAATTCTCACAATACCTATTTCCACCTTCCTGTTTCATGTTGTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAATTCTCACAATACCTATTTCCACCTTCCTGTTTCATGTTGTGC  633

seq1  CTTTTTGGTTTGGAAAAACAGAGTTCCTTCTTGTTTGGGGTTAGATGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGTTTGGAAAAACAGAGTTCCTTCTTGTTTGGGGTTAGATGGTT  683

seq1  GACTCCTGAACACTGTGGTTCCAAGGAGGGATTTTCATCATGGTGAACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGAACACTGTGGTTCCAAGGAGGGATTTTCATCATGGTGAACAT  733

seq1  TAACTTTTATTCCTATCACTAGCCTTGGAAGGCTGGCTTACAGCCCTGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTATTCCTATCACTAGCCTTGGAAGGCTGGCTTACAGCCCTGGG  783

seq1  CTGAATTGTCTGGGAACAGAGCTGAGACGGATGTGGTGTCAGTTGTTGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGTCTGGGAACAGAGCTGAGACGGATGTGGTGTCAGTTGTTGAC  833

seq1  TGAGAATGGTTATCGGTGATGGAGGAGACTATCAGTGGATATAATTCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGGTTATCGGTGATGGAGGAGACTATCAGTGGATATAATTCCAC  883

seq1  ATCACTTTGACCAGTTCAGCAGAGTTGTAGGGTGAGCGGCTCATAGCACG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTGACCAGTTCAGCAGAGTTGTAGGGTGAGCGGCTCATAGCACG  933

seq1  ATTCCCTCCTTCTCTGAGTCATAGGGCAGGGGCCCTTCAGAAAGAATATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCCTTCTCTGAGTCATAGGGCAGGGGCCCTTCAGAAAGAATATG  983

seq1  CAGTTGAAGATATTCAAGAGACTTGAGCTTGGCAGTTGGTCACAGTCTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGATATTCAAGAGACTTGAGCTTGGCAGTTGGTCACAGTCTGC  1033

seq1  ACCCTCAATCTTTTAGACCAGTCAGCTTTTCCTTTCTGAATAAGAGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAATCTTTTAGACCAGTCAGCTTTTCCTTTCTGAATAAGAGAATT  1083

seq1  C  1099
      |
seq2  C  1084