BAC Information

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BAC

Clone NameB6Ng01-006N21
Chromosome4 (Build37)10 (Build37)
Map Location 30,856,871 - 30,857,397106,636,987 - 106,637,717
singlet/doubletsingletsinglet
Overlap geneLOC100040864
Upstream geneLOC665185, LOC619906
Downstream geneLOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006N21.bB6Ng01-006N21.g
ACCDH843604DH843605
length1,025731
definitionDH843604|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N21, 5' end.DH843605|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,856,871 - 30,857,397)(106,636,987 - 106,637,717)
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctctt
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggacctt
tcccagaagctgttttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctgagaagctctgtggctcttgtctggaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgccacccagaag
ctctgcgactctcgcctgtcccagaaacggctggcactctgtattccaca
cggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcaggccgggcagacccccgtgc
tctcaccaggaaggtggccggctatctggagctgaagatggcgccgccca
gaagctctgcgactctcgcccgtcccagaaacggctggcactctgtattc
cacacggtcacccgtgcagcctgccctccgcagagtcccggagccagaag
ctcccgccggcacctgtgccacaaacctcctcagccgggcagacccccgt
gctctcaccaggaaagtggccggctgtctggagctgaagatggcgccccc
cagaagctctgcgactcctcgcccc
gaattcccctgtactggggcatataaagtttgcaagtccaatgggcctct
ctttggtgctggcacaactggcggttatcatgtagaagaatgcgagttga
tccattcctatctccttgtactaaggtcaaatctaaatggattaaggaac
tccacataaaaccagagacactgaaacttatagaggagaaagaagggaaa
accctcgaagatatgggtacaggggaaaaattcctgaatagaagagcaat
ggcttgtgctgtaagatcaagaattgattccttttcttaagaactttcag
gctctggcaatatcaaaattagagtttctgcatatcatggtgcctatgat
taacgattctgtggtgtgccctgcaaaacaaaattgtcaagatggttgat
tttatgttaagtgttataaccaaaattaaaacaaacaaaaatgtcatctt
cttttcttcagatatttctcttccattcatagaattgtatttcttttgac
ctctatgaaataaaactcatagctatatatggcttagaaaggtgaattag
taattaagagcacttgctcttcttctaaaggacctcagttcaattcccag
cacccaagtctcttgttcataacctcccataactatggttccaaggaaac
cagtactatcttctccatgggtaccaacacataaatataaatctctctct
ctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30856871_30857397
seq2: B6Ng01-006N21.b_532_1056

seq1  TCCGGAAGGAGGCCGGCCGTCTGGAGCTGAGGATGGCGCTGCCTCAGAAG  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGGAGGCCGGCCGTCTGGAGCTGAGGATGGCGCTGCCTCAGAAG  50

seq1  CTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGG  100

seq1  CGCCGCCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGCTGGCAC  150
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  CGCCACCCAGAAGCTCTGCGACTCTCGCCTGTCCCAGAAACGGCTGGCAC  150

seq1  TCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGG  200

seq1  AGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCGGG  250

seq1  CAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTATCTGGAGCTGATG  300
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTATCTGGAGCTGAAG  300

seq1  ATGGCGCCGCCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGCCGCCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGCTG  350

seq1  GCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTC  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCAGAGTC  400

seq1  CTGGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCT-CTCAGG  449
      | |||||| |||| |||||||||||| |||||||||||||||| |||| |
seq2  CCGGAGCC-AGAA-GCTCCCGCCGGCACCTGTGCCACAAACCTCCTCA-G  447

seq1  CCAGGCAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGC  499
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCGGGCAGACCCCCGTGCTCTCACCAGGAAAGTGGCCGGCTGTCTGGAGC  497

seq1  TGAAGATGGCGCCGCCCAGAAGCTCTGC  527
      ||||||||||||| ||||||||||||||
seq2  TGAAGATGGCGCCCCCCAGAAGCTCTGC  525

seq1: chr10_106636987_106637717
seq2: B6Ng01-006N21.g_68_798

seq1  GAATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCT  50

seq1  CTTTGGTGCTGGCACAACTGGCGGTTATCATGTAGAAGAATGCGAGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGCTGGCACAACTGGCGGTTATCATGTAGAAGAATGCGAGTTGA  100

seq1  TCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAATGGATTAAGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAATGGATTAAGGAAC  150

seq1  TCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGAAGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGAAGGGAAA  200

seq1  ACCCTCGAAGATATGGGTACAGGGGAAAAATTCCTGAATAGAAGAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCGAAGATATGGGTACAGGGGAAAAATTCCTGAATAGAAGAGCAAT  250

seq1  GGCTTGTGCTGTAAGATCAAGAATTGATTCCTTTTCTTAAGAACTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGCTGTAAGATCAAGAATTGATTCCTTTTCTTAAGAACTTTCAG  300

seq1  GCTCTGGCAATATCAAAATTAGAGTTTCTGCATATCATGGTGCCTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCAATATCAAAATTAGAGTTTCTGCATATCATGGTGCCTATGAT  350

seq1  TAACGATTCTGTGGTGTGCCCTGCAAAACAAAATTGTCAAGATGGTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGATTCTGTGGTGTGCCCTGCAAAACAAAATTGTCAAGATGGTTGAT  400

seq1  TTTATGTTAAGTGTTATAACCAAAATTAAAACAAACAAAAATGTCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTAAGTGTTATAACCAAAATTAAAACAAACAAAAATGTCATCTT  450

seq1  CTTTTCTTCAGATATTTCTCTTCCATTCATAGAATTGTATTTCTTTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCAGATATTTCTCTTCCATTCATAGAATTGTATTTCTTTTGAC  500

seq1  CTCTATGAAATAAAACTCATAGCTATATATGGCTTAGAAAGGTGAATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGAAATAAAACTCATAGCTATATATGGCTTAGAAAGGTGAATTAG  550

seq1  TAATTAAGAGCACTTGCTCTTCTTCTAAAGGACCTCAGTTCAATTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGAGCACTTGCTCTTCTTCTAAAGGACCTCAGTTCAATTCCCAG  600

seq1  CACCCAAGTCTCTTGTTCATAACCTCCCATAACTATGGTTCCAAGGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGTCTCTTGTTCATAACCTCCCATAACTATGGTTCCAAGGAAAC  650

seq1  CAGTACTATCTTCTCCATGGGTACCAACACATAAATATAAATCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTATCTTCTCCATGGGTACCAACACATAAATATAAATCTCTCTCT  700

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  731
      |||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  731