BAC Information

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BAC

Clone NameB6Ng01-007I19
Chromosome4 (Build37)
Map Location 75,834,209 - 75,970,086
singlet/doubletdoublet
Overlap genePtprd
Upstream gene3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007I19.bB6Ng01-007I19.g
ACCDH844083DH844084
length1,110653
definitionDH844083|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I19, 5' end.DH844084|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,834,209 - 75,835,333)(75,969,432 - 75,970,086)
sequence
gaattcaaagccatgcctcctgcagtaactctggtgagcattgagaagca
gattatggttggctattggtaaatactctaatttcaggaaagcgaaaaca
agaatgtgtgtatctacacaaagcagaaagcaatgaatgataaagtacaa
attaatggagttcaaaataaagcagaaagagaaagaactgaggagacagc
attctatgtctcaacacggtaattaaaactttaaacttctgctgagtctg
attaagacaaaaggaataggcagaaatacacattgtgagtaatttaaaaa
ttgacagaattatagacaaataagaggatgtttttagatactgggagaga
atcaaagaaaatatgtttatagaacttcaaaaataaagtaagagtgaggt
ttcttaaaaaatacatattactgagcatgataaataatttttttaaatgg
tcaggataatgaaatacagaagaggctctcagttaatgacaggaataacc
atatagctgcattttcaattgagagaaagcatacaatcaggcaacacagt
gcagagacaaccagagttcagtaaagagggacataattagaccaccactc
atactaaggaggaagggctacttgaaaggattaaaggatgaataattgtg
ggaaaatagaattactgaataaatttagaaggttaagtctttcataaggt
tctcaaatgacataagaagaaataattataaagaaaggatatatttgact
ctatgtgctttctgttactccttaaaaaaaaggaagcagacctcatggac
tgacactgtattgaagatgaaacacacatagcagagaagcataaaatgta
cctcactaggagccaaggaagaaacagacagtaagataaactgtttcacg
ctgctcagaatggcaaatttaaaggctgcactcacccaaatccagcaagt
gtaggtagaaaatacaaatctgctattgctggtagaaacacaagtaaata
ctattagagaaatgatgatgtataaggttctgtgtattttcttttcaact
ggcttgatgatttaatgtaggcaagtctagatatctcttgctatataaga
aaagaaacag
gaattccctcactaacagccaagtgcttcatttaaatggagatctatttt
ctaaaggaatctttcaaggaggaaaaaaaataatgttattaattgaatgc
atgtggagtatgcatgttctaagcacagcattctgtggttaatttatata
tatatatatatatatatatatatatatatatatatattcggctaattagc
acttgggagtattggtttaaggttaagccaaggaatttctaattccatgc
caggaattaattaattgggggaaagatcctctgttaggcattgatattgt
aaaggcatttatgtcaaaacttatttcaaaaatataaatttactttattg
gaaagcaattgaatgtataactttgtgaattctgttttggccaaagtcca
gaagtaactgttttcatcattgttcatttttggcaaaagcatattaagac
cctaggaacccacttaaatgtaaaatcagaactgtgtgtttttctgaacc
ttactagttacatatctgagaaaatcatccttgcagacagaaaaatcctc
ttctttggagaagctaagggtttgcttattgctgtggtggaaaggggcag
acagatgtcaagagctgagggacaggtattgctgaacggcatttctctgc
cac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75834209_75835333
seq2: B6Ng01-007I19.b_44_1153

seq1  GAATTCAAAGCCATGCCTCCTGCAGTAACTCTGGTGAGCATTGAGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCATGCCTCCTGCAGTAACTCTGGTGAGCATTGAGAAGCA  50

seq1  GATTATGGTTGGCTATTGGTAAATACTCTAATTTCAGGAAAGCGAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGGTTGGCTATTGGTAAATACTCTAATTTCAGGAAAGCGAAAACA  100

seq1  AGAATGTGTGTATCTACACAAAGCAGAAAGCAATGAATGATAAAGTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGTGTATCTACACAAAGCAGAAAGCAATGAATGATAAAGTACAA  150

seq1  ATTAATGGAGTTCAAAATAAAGCAGAAAGAGAAAGAACTGAGGAGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGAGTTCAAAATAAAGCAGAAAGAGAAAGAACTGAGGAGACAGC  200

seq1  ATTCTATGTCTCAACACGGTAATTAAAACTTTAAACTTCTGCTGAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGTCTCAACACGGTAATTAAAACTTTAAACTTCTGCTGAGTCTG  250

seq1  ATTAAGACAAAAGGAATAGGCAGAAATACACATTGTGAGTAATTTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACAAAAGGAATAGGCAGAAATACACATTGTGAGTAATTTAAAAA  300

seq1  TTGACAGAATTATAGACAAATAAGAGGATGTTTTTAGATACTGGGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAATTATAGACAAATAAGAGGATGTTTTTAGATACTGGGAGAGA  350

seq1  ATCAAAGAAAATATGTTTATAGAACTTCAAAAATAAAGTAAGAGTGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAAAATATGTTTATAGAACTTCAAAAATAAAGTAAGAGTGAGGT  400

seq1  TTCTTAAAAAATACATATTACTGAGCATGATAAATAATTTTTTTAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAAAATACATATTACTGAGCATGATAAATAATTTTTTTAAATGG  450

seq1  TCAGGATAATGAAATACAGAAGAGGCTCTCAGTTAATGACAGGAATAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAATGAAATACAGAAGAGGCTCTCAGTTAATGACAGGAATAACC  500

seq1  ATATAGCTGCATTTTCAATTGAGAGAAAGCATACAATCAGGCAACACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTGCATTTTCAATTGAGAGAAAGCATACAATCAGGCAACACAGT  550

seq1  GCAGAGACAACCAGAGTTCAGTAAAGAGGGACATAATTAGACCACCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACAACCAGAGTTCAGTAAAGAGGGACATAATTAGACCACCACTC  600

seq1  ATACTAAGGAGGAAGGGCTACTTGAAAGGATTAAAGGATGAATAATTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGGAGGAAGGGCTACTTGAAAGGATTAAAGGATGAATAATTGTG  650

seq1  GGAAAATAGAATTACTGAATAAATTTAGAAGGTTAAGTCTTTCATAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAGAATTACTGAATAAATTTAGAAGGTTAAGTCTTTCATAAGGT  700

seq1  TCTCAAATGACATAAGAAGAAATAATTATAAAGAAAGGATATATTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATGACATAAGAAGAAATAATTATAAAGAAAGGATATATTTGACT  750

seq1  CTATGTGCTTTCTGTTACTCCTTAAAAAAAAGGAAGCAGACCTCATGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGCTTTCTGTTACTCCTTAAAAAAAAGGAAGCAGACCTCATGGAC  800

seq1  TGACACTGTATTGAAGATGAAACACACATAGCAGAGAAGCATAAAATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGTATTGAAGATGAAACACACATAGCAGAGAAGCATAAAATGTA  850

seq1  CCTCACTAGGAGCCAAGGAAGAAACAGACAGTAAGATAAACTGTTTCACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTAGGAGCCAAGGAAGAAACAGACAGTAAGATAAACTGTTTCACG  900

seq1  CTGCTCAGAATGGCAAATTT-AAGGCTGCACTCACCCAAATCCAGCAAGT  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGCTCAGAATGGCAAATTTAAAGGCTGCACTCACCCAAATCCAGCAAGT  950

seq1  GTAGGTAGAAAATACAAATCTTGCTATTGCTGGTAGAAACACAAAGTAAA  999
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GTAGGTAGAAAATACAAATC-TGCTATTGCTGGTAGAAACAC-AAGTAAA  998

seq1  ATAACTATTAGAAGAAAATGATGATGTTAATAAGGTTTCTGTGTAATTTT  1049
         |||||||||   ||||||||||||  |||||| |||||||||  |||
seq2  --TACTATTAGA--GAAATGATGATGT--ATAAGG-TTCTGTGTA--TTT  1039

seq1  TCTTTTCCAACTGGGCTTGATGATATTAATGTAGGCAAGTTCCTAGAATA  1099
      |||||| ||||| ||||||||||| |||||||||||||||  |||| |||
seq2  TCTTTT-CAACT-GGCTTGATGAT-TTAATGTAGGCAAGT--CTAG-ATA  1083

seq1  TCTC-TGCTATATAAGAAAAGACACAG  1125
      |||| ||||||||||||||||| ||||
seq2  TCTCTTGCTATATAAGAAAAGAAACAG  1110

seq1: chr4_75969432_75970086
seq2: B6Ng01-007I19.g_68_720 (reverse)

seq1  GTGGCAGAGAAATGCCGTCTCAGCAATACCTGTCCCTCAGCTCTTGACAT  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGCAGAGAAATGCCGT-TCAGCAATACCTGTCCCTCAGCTCTTGACAT  49

seq1  CTGTCTGCCCCTTTCCACCACAGCAATAAGCAAACCCTTAGCTTCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCCCTTTCCACCACAGCAATAAGCAAACCCTTAGCTTCTCCAA  99

seq1  AGAAGAGGATTTTTCTGTCTGCAAGGATGATTTTCTCAGATATGTAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGATTTTTCTGTCTGCAAGGATGATTTTCTCAGATATGTAACTA  149

seq1  GTAAGGTTCAGAAAAACACACAGTTCTGATTTTACATTTAAGTGGGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTTCAGAAAAACACACAGTTCTGATTTTACATTTAAGTGGGTTCC  199

seq1  TAGGGTCTTAATATGCTTTTGCCAAAAATGAACAATGATGAAAACAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCTTAATATGCTTTTGCCAAAAATGAACAATGATGAAAACAGTTA  249

seq1  CTTCTGGACTTTGGCCAAAACAGAATTCACAAAGTTATACATTCAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGACTTTGGCCAAAACAGAATTCACAAAGTTATACATTCAATTGC  299

seq1  TTTCCAATAAAGTAAATTTATATTTTTGAAATAAGTTTTGACATAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATAAAGTAAATTTATATTTTTGAAATAAGTTTTGACATAAATGC  349

seq1  CTTTACAATAACAATGCCTTACATTTGGATCTTTCCCCCAATTAATTAAT  400
      |||||||||| |||||||| |||   ||||||||||||||||||||||||
seq2  CTTTACAATATCAATGCCTAACA-GAGGATCTTTCCCCCAATTAATTAAT  398

seq1  TCCTGGCATGGAATTAGAAATTCCTTGGCTTAACCTTAAACCAATACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCATGGAATTAGAAATTCCTTGGCTTAACCTTAAACCAATACTCC  448

seq1  CAAGTGCTAATTAGCCGAATATATATATATATATATATATATATATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTAATTAGCCGAATATATATATATATATATATATATATATATAT  498

seq1  ATATATATATAAATTAACCACAGAATGCTGTGCTTAGAACATGCATACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATAAATTAACCACAGAATGCTGTGCTTAGAACATGCATACTC  548

seq1  CACATGCATTCAATTAATAACATTATTTTTTTTCCTCCTTGAAAGATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATTCAATTAATAACATTATTTTTTTTCCTCCTTGAAAGATTCC  598

seq1  TTTAGAAAATAGATCTCCATTTAAATGAAGCACTTGGCTGTTAGTGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAATAGATCTCCATTTAAATGAAGCACTTGGCTGTTAGTGAGGG  648

seq1  AATTC  655
      |||||
seq2  AATTC  653