BAC Information

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BAC

Clone NameB6Ng01-008G16
Chromosome4 (Build37)
Map Location 77,535,195 - 77,702,929
singlet/doubletdoublet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008G16.bB6Ng01-008G16.g
ACCDH844680DH844681
length8881,064
definitionDH844680|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G16, 5' end.DH844681|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,535,195 - 77,536,081)(77,701,865 - 77,702,929)
sequence
gaattccaaggcaaggagggcaagagagggcctgcatggagaggtgcaat
gatccacaacatcagacagatagcagcacttccaagtgttccagaatatg
caaaatatggaaaatggcagtctaagtttgccctttaaaattggaggacc
tacagtaaaaagaaaaagtaataaaagcaaatctcatgaatttatatttc
atcctttttaagcagccatacatacttctttttttatttttatttttttt
ttacccctctgataattctcaatagactggtagccagggaaatgaagtaa
ctgttcacgctcttaaatatgtataagtttgtatcttccaaaaccttaaa
cttaatagcaggttgccggttctaatattcacacagtgtggaacagccac
tgctaatgagtgaggcccatttgccaagttcgagttcaaggattccaatt
atattacagatgcagtgcttgccaatgccaagaattcaatttccagtaat
gataaaggaatatgttcgagtttaaagagaatttttacagactagaattt
taaaaaatttcttagcttcactcattttatacccctaattgctgtttctc
ttttaggcatcaatacttagctattgctgttacatcataaaaaaaattga
tgattttggacaatattaagggaatacccatttttatcacaaatatgatg
ccctttttccaagtaaagataaccatgaaaattataatgccacatgggta
cagtccttaatgacacaccaggcagttatgtaccactgacattgcaggcc
ttctctcatattgacatgcaatgttagctatatcttaagattacttgaat
ttaaaatccttaagtagagaaaatatttctattttcat
gaattctctagtgagtcagggaggtaagaaagtagaattaattaaatgga
acagtgaattactcttctcccaagtatcagagcacctgatatagtgtttg
cctcataacagaccctcagactgatatttgcaaagttaatacatgtttta
ctatctcagccatttgaatcaacatagtgagtcaaacaggttgttatgtt
aaatgtgtggtattttttttttaaatcaattgtatgaatgttttatctga
atgtatgcatatacacaatatgcatatctggtgcatgcagaggacaggtt
agagcaacagatctcctagaactgaagatacagattattaaaaatttata
cactggtgacaggaatcaaacctgcaaagtttcctagcataccaagtgct
attaaccactgagccatttttacagtctcaaaaatagtcttaacactgtt
gacaagtggtagattattcagcaagagctgtggcataagagtaaagagtt
aaattggtgttgagaacaggagtctattttcttgtgcacttatatatttt
tattaaaagggataattttgaaatttgaaaatcaaaatgtttttaattaa
aatatatgtggtccataaatagtaagatccagcgtttgactgtgatttga
atggtaaatgtccactaaaataataatgatttttaacatattcagaagca
aatgttttatcaaaaaagacacatagattggctgtaaaaataaattcaag
cagatcagtatgctgactgaggaaatgcacatcagtcaaacaacatgaca
gcaaaatatatgatcaaatcctatcagtgtgtttcttccaagggcaatag
ctaatttcaaccagaactggacacttcttccactttttgcatacttatag
attcataaatatatactacagaatcagggactataaatttctggaagaca
ttgggggaagctgtaataattggtggtgtgcactccttggaaatttccct
gaatattcctaacacttggactttcaaaatagaagctgcctgtaagcttc
cacagtagggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77535195_77536081
seq2: B6Ng01-008G16.b_34_921

seq1  GAATTCCAAGGCAAGGAGGGCAAGAGAGGGCCTGCATGGAGAGGTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCAAGGAGGGCAAGAGAGGGCCTGCATGGAGAGGTGCAAT  50

seq1  GATCCACAACATCAGACAGATAGCAGCACTTCCAAGTGTTCCAGAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACAACATCAGACAGATAGCAGCACTTCCAAGTGTTCCAGAATATG  100

seq1  CAAAATATGGAAAATGGCAGTCTAAGTTTGCCCTTTAAAATTGGAGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGGAAAATGGCAGTCTAAGTTTGCCCTTTAAAATTGGAGGACC  150

seq1  TACAGTAAAAAGAAAAAGTAATAAAAGCAAATCTCATGAATTTATATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAAAAGAAAAAGTAATAAAAGCAAATCTCATGAATTTATATTTC  200

seq1  ATCCTTTTTAAGCAGCCATACATACTTCTTTTTTTATTTTTATTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTTAAGCAGCCATACATACTTCTTTTTTTATTTTTATTTTTTTT  250

seq1  TTACCCCTCTGATAATTCTCAATAGACTGGTAGCCAGGGAAATGAAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCTCTGATAATTCTCAATAGACTGGTAGCCAGGGAAATGAAGTAA  300

seq1  CTGTTCACGCTCTTAAATATGTATAAGTTTGTATCTTCCAAAACCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACGCTCTTAAATATGTATAAGTTTGTATCTTCCAAAACCTTAAA  350

seq1  CTTAATAGCAGGTTGCCGGTTCTAATATTCACACAGTGTGGAACAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAGCAGGTTGCCGGTTCTAATATTCACACAGTGTGGAACAGCCAC  400

seq1  TGCTAATGAGTGAGGCCCATTTGCCAAGTTCGAGTTCAAGGATTCCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGAGTGAGGCCCATTTGCCAAGTTCGAGTTCAAGGATTCCAATT  450

seq1  ATATTACAGATGCAGTGCTTGCCAATGCCAAGAATTCAATTTCCAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAGATGCAGTGCTTGCCAATGCCAAGAATTCAATTTCCAGTAAT  500

seq1  GATAAAGGAATATGTTCGAGTTTAAAGAGAATTTTTACAGACTAGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGAATATGTTCGAGTTTAAAGAGAATTTTTACAGACTAGAATTT  550

seq1  T-AAAAATTTCTTAGCTTCACTCATTTTATACCCCTAATTGCTG-TTCTC  598
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAAAAATTTCTTAGCTTCACTCATTTTATACCCCTAATTGCTGTTTCTC  600

seq1  -TTTAGGCATCAATACTTAGCTATTGCTGTTACATCATAAAAAAAATTGA  647
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCATCAATACTTAGCTATTGCTGTTACATCATAAAAAAAATTGA  650

seq1  TGA-TTTGGACAATATTAAGGGAATACCCATTTTTATCACAAATATGATG  696
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGGACAATATTAAGGGAATACCCATTTTTATCACAAATATGATG  700

seq1  CCC-TTTTCCAAGTAAAGATAACCATGAAAATTAGAATGCCACATGGGTA  745
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCTTTTTCCAAGTAAAGATAACCATGAAAATTATAATGCCACATGGGTA  750

seq1  CAGTCC-TAATGACACACCAGGCAGTTATGTACCACTGACATTGCAAGGC  794
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGTCCTTAATGACACACCAGGCAGTTATGTACCACTGACATTGC-AGGC  799

seq1  CTTCTCTCATATTGACATGCAATGTTAGCTATATCTTAAAGATTACTTGA  844
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTCTCTCATATTGACATGCAATGTTAGCTATATCTT-AAGATTACTTGA  848

seq1  ATTTAAAATCCTTAAGTAGAGATAAATATTTTCATATTTTCAT  887
      |||||||||||||||||||||| ||||||||   |||||||||
seq2  ATTTAAAATCCTTAAGTAGAGA-AAATATTT--CTATTTTCAT  888

seq1: chr4_77701865_77702929
seq2: B6Ng01-008G16.g_69_1132 (reverse)

seq1  ATCA-CCTACTGTTGAGAGC-TACAAGCAGCTTCTATTTTGTAAGTCAAG  48
      |||| |||||||| || ||| |||| ||||||||||||||| ||||| | 
seq2  ATCACCCTACTGTGGA-AGCTTACAGGCAGCTTCTATTTTGAAAGTCCAA  49

seq1  TTGTTTGTGAATAATTCAGAGAAATTTTCAA-GAGTGCACACCA-CAATT  96
       |||| | |||| |||||| ||||||| ||| |||||||||||| |||||
seq2  GTGTTAG-GAAT-ATTCAGGGAAATTTCCAAGGAGTGCACACCACCAATT  97

seq1  ATTTACAGCTTTCCCCAATGTCTTCCAG-AATTTATAGTCCCTGA-TCTG  144
      | ||||||||| |||||||||||||||| |||||||||||||||| ||||
seq2  A-TTACAGCTTCCCCCAATGTCTTCCAGAAATTTATAGTCCCTGATTCTG  146

seq1  TAGTATATACTTTATGAATCTATAAGTATGCAAAAAGTGGAAGAAGTGTC  194
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATA-TTTATGAATCTATAAGTATGCAAAAAGTGGAAGAAGTGTC  195

seq1  CAGTTCTGGTTGAAATTAAGCTATTGCCCTTGGAAGGAACCACACTGATA  244
      ||||||||||||||||| ||||||||||||||||| ||| ||||||||||
seq2  CAGTTCTGGTTGAAATT-AGCTATTGCCCTTGGAA-GAAACACACTGATA  243

seq1  GGATTTGATCATATATTTTGCTGTCATGTTGTTTGACTGATGTGCATTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGATCATATATTTTGCTGTCATGTTGTTTGACTGATGTGCATTTC  293

seq1  CTCAGTCAGCATACTGATCTGCTTGAATTTATTTTTACAGCCAATCTATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGCATACTGATCTGCTTGAATTTATTTTTACAGCCAATCTATG  343

seq1  TGTCTTTTTTGATAAAACATTTGCTTCTGAATATGTTAAAAATCATTATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTGATAAAACATTTGCTTCTGAATATGTTAAAAATCATTATT  393

seq1  ATTTTAGTGGACATTTACCATTCAAATCACAGTCAAACGCTGGATCTTAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGGACATTTACCATTCAAATCACAGTCAAACGCTGGATCTTAC  443

seq1  TATTTATGGACCACATATATTTTAATTAAAAACATTTTGATTTTCAAATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGGACCACATATATTTTAATTAAAAACATTTTGATTTTCAAATT  493

seq1  TCAAAATTATCCCTTTTAATAAAAATATATAAGTGCACAAGAAAATAGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTATCCCTTTTAATAAAAATATATAAGTGCACAAGAAAATAGAC  543

seq1  TCCTGTTCTCAACACCAATTTAACTCTTTACTCTTATGCCACAGCTCTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTCAACACCAATTTAACTCTTTACTCTTATGCCACAGCTCTTG  593

seq1  CTGAATAATCTACCACTTGTCAACAGTGTTAAGACTATTTTTGAGACTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAATCTACCACTTGTCAACAGTGTTAAGACTATTTTTGAGACTGT  643

seq1  AAAAATGGCTCAGTGGTTAATAGCACTTGGTATGCTAGGAAACTTTGCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCTCAGTGGTTAATAGCACTTGGTATGCTAGGAAACTTTGCAG  693

seq1  GTTTGATTCCTGTCACCAGTGTATAAATTTTTAATAATCTGTATCTTCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCCTGTCACCAGTGTATAAATTTTTAATAATCTGTATCTTCAG  743

seq1  TTCTAGGAGATCTGTTGCTCTAACCTGTCCTCTGCATGCACCAGATATGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAGATCTGTTGCTCTAACCTGTCCTCTGCATGCACCAGATATGC  793

seq1  ATATTGTGTATATGCATACATTCAGATAAAACATTCATACAATTGATTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGTATATGCATACATTCAGATAAAACATTCATACAATTGATTTA  843

seq1  AAAAAAAAATACCACACATTTAACATAACAACCTGTTTGACTCACTATGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATACCACACATTTAACATAACAACCTGTTTGACTCACTATGT  893

seq1  TGATTCAAATGGCTGAGATAGTAAAACATGTATTAACTTTGCAAATATCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAATGGCTGAGATAGTAAAACATGTATTAACTTTGCAAATATCA  943

seq1  GTCTGAGGGTCTGTTATGAGGCAAACACTATATCAGGTGCTCTGATACTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGGTCTGTTATGAGGCAAACACTATATCAGGTGCTCTGATACTT  993

seq1  GGGAGAAGAGTAATTCACTGTTCCATTTAATTAATTCTACTTTCTTACCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGAGTAATTCACTGTTCCATTTAATTAATTCTACTTTCTTACCT  1043

seq1  CCCTGACTCACTAGAGAATTC  1065
      |||||||||||||||||||||
seq2  CCCTGACTCACTAGAGAATTC  1064