BAC Information

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BAC

Clone NameB6Ng01-009B08
Chromosome4 (Build37)
Map Location 111,524,121 - 111,525,263
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612
Downstream geneSlc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009B08.bB6Ng01-009B08.g
ACCDH845124DH845125
length1,1771,036
definitionDH845124|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B08, 5' end.DH845125|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagagaggcacagcagagaacttctggtgtccctcctggtttt
ggttgctcctgctgactcatgccgatttggtggaggcctgattgtttctg
ctaggtcatgccacccctgctcatacatgtttgctatcccacactactgg
actgctggtatattcgtggagtgtttgcaagtgaattgagctgtcactgc
tgattcctgtgaattacactgctgatttcctgacaatgctccaaagaaca
atttctaaacagatccacttcccccatatcctaataacctttcttttcaa
ctacttctggtgggtggtgggctagaagagaggttaaagcatttaagagc
ctatgttagaagtagtgtttgtaaaaacagcttacaatcaccagaagatg
tagcccagatttacagtgggtcttcccacctcaaatgatccagaccagaa
aaatccttcacaggtgcactcaatggcttggattttagttcattccagat
gtagccaagttgagagccaagaatagacatttcaggggtttaggacaatt
atgctttataagagcaactatagttctgatgtggaggatcctggagacag
cagcgggatatcatcattcacatgaactgacactggaatttgtggtccag
aggactgtttctaggttactttagtgattgtgacttatcaattctcatta
ctggaagattacagtgtgtatatacatgtgtgtatgtatgtgagtaaatg
tacatgtattatacttaactatcacattttactcagtgaccagaaaagca
tagtagttaaatgtatgtgggcttctgaagtcagctgatgaataaatcaa
atcttcatttcaacccttttaactgcatgttctcagagaaatgtcttttg
agtctcagtttcatgtgtaaaataaaaatgtcaccatccctttaagattc
ctcattaaattactaagtgcttaaaacaatgctgggcccctgctaagagc
tatagaaagggcgtttatcaccacatcaccaccagcatcacactaccata
ccatcaccatccctaccaccaacaccgtatcatcattcatcaactgggca
atttataagattcattaaaagtcatttgaaataatcctttccagattttc
ctcccgaagtccaaaataattatgtta
gaattcttctaacaaatggagattctccacagatacttaaaagttactag
aaattatcagggcccagaaaataggggggttgtggtattgcagtattcat
gagaaggtctgctaaagtagaaccccaggtggtgggtttaacaatagact
agctttacatctggctcccttcttagtggcagcggcctggtccctgcctt
cttttgatgtatattttccttttgtattgtgtcacttagtggattgtatc
tcatctggtttcttgctattcttctgtataaaaagcttgatgctcaactt
aacaaattacagtcagattctacacaatctcaggtgtcggtctgtctgtc
atttgccgactctttgcccacctgcgaccagagacccattccacacagaa
aaagagacccagagggtctgtggcaaatctgcaaagtggaacttttaccc
caccagtcagtgtatgatcctttgtgtccactacaggaaattccatgggc
tttgcctggggaatctcatggggacagctatcttcccaaggtcagtctcc
atgaaaaatcagtgaattctttatcttgcagagtgtgacagtggaggaat
cagcaccctataggtaggcagtcatagtcatttgcacatctgttccagga
agtttccatttagaggacttttctttggcgactaaaactgagaccctttt
caattacatctgatgtagttagaatttatagaaatcagcttgtacaaaag
taatcttctgcactctgactcagaccatttctattcttagaactcttata
tatctttcctgtccatgggataaaagaggcctctttattgggagattttt
ctcacctaagctcatgtgacattacttttactcgagtcattccatgggga
aaaatagaatagcagagtgtcaacataatactcgaaacctaacttgacct
caggtactgcataaggacttgacaggactcctgctttgcttggccttatg
tatgttcgtttgcttgctggtttgtttggctgcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111524121_111525263
seq2: B6Ng01-009B08.b_83_1222

seq1  CCCTCCTGGTTTTGGTTGCTCCTGCTGACTCATGCCGATTTGGTGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGGTTTTGGTTGCTCCTGCTGACTCATGCCGATTTGGTGGAGGC  50

seq1  CTGATTGTTTCTGCTAGGTCATGCCACCCCTGCTCATACATGTTTGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTTTCTGCTAGGTCATGCCACCCCTGCTCATACATGTTTGCTAT  100

seq1  CCCACACTACTGGACTGCTGGTATATTCGTGGAGTGTTTGCAAGTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTACTGGACTGCTGGTATATTCGTGGAGTGTTTGCAAGTGAATT  150

seq1  GAGCTGTCACTGCTGATTCCTGTGAATTACACTGCTGATTTCCTGACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCACTGCTGATTCCTGTGAATTACACTGCTGATTTCCTGACAAT  200

seq1  GCTCCAAAGAACAATTTCTAAACAGATCCACTTCCCCCATATCCTAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAAGAACAATTTCTAAACAGATCCACTTCCCCCATATCCTAATAA  250

seq1  CCTTTCTTTTCAACTACTTCTGGTGGGTGGTGGGCTAGAAGAGAGGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTTCAACTACTTCTGGTGGGTGGTGGGCTAGAAGAGAGGTTAA  300

seq1  AGCATTTAAGAGCCTATGTTAGAAGTAGTGTTTGTAAAAACAGCTTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAAGAGCCTATGTTAGAAGTAGTGTTTGTAAAAACAGCTTACAA  350

seq1  TCACCAGAAGATGTAGCCCAGATTTACAGTGGGTCTTCCCACCTCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAAGATGTAGCCCAGATTTACAGTGGGTCTTCCCACCTCAAATG  400

seq1  ATCCAGACCAGAAAAATCCTTCACAGGTGCACTCAATGGCTTGGATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGACCAGAAAAATCCTTCACAGGTGCACTCAATGGCTTGGATTTTA  450

seq1  GTTCATTCCAGATGTAGCCAAGTTGAGAGCCAAGAATAGACATTTCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCCAGATGTAGCCAAGTTGAGAGCCAAGAATAGACATTTCAGGG  500

seq1  GTTTAGGACAATTATGCTTTATAAGAGCAACTATAGTTCTGATGTGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGACAATTATGCTTTATAAGAGCAACTATAGTTCTGATGTGGAGG  550

seq1  ATCCTGGAGACAGCAGCGGGATATCATCATTCACATGAACTGACACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGAGACAGCAGCGGGATATCATCATTCACATGAACTGACACTGGA  600

seq1  ATTTGTGGTCCAGAGGACTGTTTCTAGGTTACTTTAGTGATTGTGACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGTCCAGAGGACTGTTTCTAGGTTACTTTAGTGATTGTGACTTA  650

seq1  TCAATTCTCATTACTGGAAGATTACAGTGTGTATATACATGTGTGTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTCATTACTGGAAGATTACAGTGTGTATATACATGTGTGTATGT  700

seq1  ATGTGAGTAAATGTACATGTATTATACTTAACTATCACATTTTACTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTAAATGTACATGTATTATACTTAACTATCACATTTTACTCAGT  750

seq1  GACCAGAAAAGCATAGTAGTTAAATGTATGT-GGCTTCTGAAGTCAGCTG  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACCAGAAAAGCATAGTAGTTAAATGTATGTGGGCTTCTGAAGTCAGCTG  800

seq1  ATGAATAAATCAAATCTTCA-TTCAACCC-TTTAACTGCATGTTCTCAGA  847
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  ATGAATAAATCAAATCTTCATTTCAACCCTTTTAACTGCATGTTCTCAGA  850

seq1  GAAATGTC-TTTGAGTCTCAGTTTCATGTGTAAAATAAAAATGTCACCAT  896
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCTTTTGAGTCTCAGTTTCATGTGTAAAATAAAAATGTCACCAT  900

seq1  CCCTTTAAGATTCCTCATT-AATTACTAAGTGCTTAAAACAATGCTGGGC  945
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTTTAAGATTCCTCATTAAATTACTAAGTGCTTAAAACAATGCTGGGC  950

seq1  CCCTGCTAAGAGCTATAGAAAGGGCGTTTATCACCACCATCACCACCAGC  995
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCTGCTAAGAGCTATAGAAAGGGCGTTTATCACCA-CATCACCACCAGC  999

seq1  ATCATCACTACCAATACCATCACCATCACTACCACCAACACCATTATCAT  1045
      |||| ||||||| |||||||||||||| ||||||||||||||  ||||||
seq2  ATCA-CACTACC-ATACCATCACCATCCCTACCACCAACACC-GTATCAT  1046

seq1  CA-TCATCAAACTGGCAATTTATTAGATTCATTTAAAATGCTATTTTAAA  1094
      || |||||||   |||||||||| ||||||||| |||    |  ||| ||
seq2  CATTCATCAACTGGGCAATTTATAAGATTCATTAAAA---GTCATTTGAA  1093

seq1  ATAATCTTTTACTATTTTTCCTCCCAGAATTCACAAATTAATTATGTTA  1143
      |||||| ||| |   |||||||||| ||| || |||| |||||||||||
seq2  ATAATCCTTTCCAGATTTTCCTCCC-GAAGTC-CAAAATAATTATGTTA  1140