BAC Information

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BAC

Clone NameB6Ng01-009F17
Chromosome4 (Build37)
Map Location 108,548,728 - 108,662,730
singlet/doubletdoublet
Overlap geneRab3b
Upstream geneMagoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12
Downstream geneNrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F17.bB6Ng01-009F17.g
ACCDH845320DH845321
length765397
definitionDH845320|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F17, 5' end.DH845321|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,661,966 - 108,662,730)(108,548,728 - 108,549,130)
sequence
gaattcaacaaggtctgagtcagggtctgcagggaaacaaagctacagat
tctaagaacagctgagggcctaaagagctggcttgctgcttaagagaact
gggctgctcttgcagaggacccagtttgattctcagcacctatatagtga
ctcacaactgtctgtaactccagttctaagggacctagtaccctctctgg
tctccacggtcaccaggcactcaagtggcacacagacatacttacaggca
aagcactatacacattaaaattaaataatgtttaatttaatatcttttta
aaagagggcagccgaggaatcagggccagcatttgcaacctgactactga
aggactgctcagagatgggactagcatctatgatgcaacctgtaaaggac
cacccactgactgacaggaccacccactgactgacaggaccacccactga
ctgacaggaccacccactgactgacaggaccacccactgacaggaatagt
atctgtgatctgacctctcaaggacttcccagaggtgtgccaggcatcta
gggacctaggaaggaatgctgaaggaggtgagactgaagcctgaaagcag
gccagactaaactcaggctgtaggctcactgaacactcgccctatttatt
tctcctttatttaacaccccatgtcagtttactagaccactgttttgttc
ttatgtacatgttctctgtctctctctctctctgtctctctctctctctc
tgtctctctctctct
catgagcttgttattattctctccacctctggtttcttttcctcaatcag
ggcaggctgaacaattgttcttcctccacactcaagcgtccccacattct
cctctccaaaaagcagacctgggtctgacagtccttcctaaagccttcag
agtcacaggaggggtcacatgctgtacttggcaatctacacatctccctt
tggctgtttcagtgtttgtacacttgtttaccttcctagcatgggggtgg
agcagtggggagcttcttgtgctgactttaaaaagtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtacatgcacatgttatgatgcacacatgg
aagttataggacaacctcgggtgtcagccctcacattctaccctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_108661966_108662730
seq2: B6Ng01-009F17.b_47_811 (reverse)

seq1  AGAGAGAGAGAGACAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGACAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAG  50

seq1  AGAACATGTACATAAGAACAAAACAGTGGTCTAGTAAACTGACATGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGTACATAAGAACAAAACAGTGGTCTAGTAAACTGACATGGGGT  100

seq1  GTTAAATAAAGGAGAAATAAATAGGGCGAGTGTTCAGTGAGCCTACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAAAGGAGAAATAAATAGGGCGAGTGTTCAGTGAGCCTACAGCC  150

seq1  TGAGTTTAGTCTGGCCTGCTTTCAGGCTTCAGTCTCACCTCCTTCAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTAGTCTGGCCTGCTTTCAGGCTTCAGTCTCACCTCCTTCAGCAT  200

seq1  TCCTTCCTAGGTCCCTAGATGCCTGGCACACCTCTGGGAAGTCCTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTAGGTCCCTAGATGCCTGGCACACCTCTGGGAAGTCCTTGAGA  250

seq1  GGTCAGATCACAGATACTATTCCTGTCAGTGGGTGGTCCTGTCAGTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGATCACAGATACTATTCCTGTCAGTGGGTGGTCCTGTCAGTCAGT  300

seq1  GGGTGGTCCTGTCAGTCAGTGGGTGGTCCTGTCAGTCAGTGGGTGGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTCCTGTCAGTCAGTGGGTGGTCCTGTCAGTCAGTGGGTGGTCCT  350

seq1  GTCAGTCAGTGGGTGGTCCTTTACAGGTTGCATCATAGATGCTAGTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCAGTGGGTGGTCCTTTACAGGTTGCATCATAGATGCTAGTCCCA  400

seq1  TCTCTGAGCAGTCCTTCAGTAGTCAGGTTGCAAATGCTGGCCCTGATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGCAGTCCTTCAGTAGTCAGGTTGCAAATGCTGGCCCTGATTCC  450

seq1  TCGGCTGCCCTCTTTTAAAAAGATATTAAATTAAACATTATTTAATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGCCCTCTTTTAAAAAGATATTAAATTAAACATTATTTAATTTTA  500

seq1  ATGTGTATAGTGCTTTGCCTGTAAGTATGTCTGTGTGCCACTTGAGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATAGTGCTTTGCCTGTAAGTATGTCTGTGTGCCACTTGAGTGCC  550

seq1  TGGTGACCGTGGAGACCAGAGAGGGTACTAGGTCCCTTAGAACTGGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCGTGGAGACCAGAGAGGGTACTAGGTCCCTTAGAACTGGAGTT  600

seq1  ACAGACAGTTGTGAGTCACTATATAGGTGCTGAGAATCAAACTGGGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGTTGTGAGTCACTATATAGGTGCTGAGAATCAAACTGGGTCCT  650

seq1  CTGCAAGAGCAGCCCAGTTCTCTTAAGCAGCAAGCCAGCTCTTTAGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAGCAGCCCAGTTCTCTTAAGCAGCAAGCCAGCTCTTTAGGCCC  700

seq1  TCAGCTGTTCTTAGAATCTGTAGCTTTGTTTCCCTGCAGACCCTGACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTTCTTAGAATCTGTAGCTTTGTTTCCCTGCAGACCCTGACTCA  750

seq1  GACCTTGTTGAATTC  765
      |||||||||||||||
seq2  GACCTTGTTGAATTC  765

seq1: chr4_108548728_108549130
seq2: B6Ng01-009F17.g_70_472

seq1  GAATTCCATGAGCTTGTTATTATTCTCTCCACCTCTGGTTTCTTTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGCTTGTTATTATTCTCTCCACCTCTGGTTTCTTTTCCTC  50

seq1  AATCAGGGCAGGCTGAACAATTGTTCTTCCTCCACACTCAAGCGTCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGCAGGCTGAACAATTGTTCTTCCTCCACACTCAAGCGTCCCCA  100

seq1  CATTCTCCTCTCCAAAAAGCAGACCTGGGTCTGACAGTCCTTCCTAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCTCTCCAAAAAGCAGACCTGGGTCTGACAGTCCTTCCTAAAGC  150

seq1  CTTCAGAGTCACAGGAGGGGTCACATGCTGTACTTGGCAATCTACACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTCACAGGAGGGGTCACATGCTGTACTTGGCAATCTACACATC  200

seq1  TCCCTTTGGCTGTTTCAGTGTTTGTACACTTGTTTACCTTCCTAGCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGGCTGTTTCAGTGTTTGTACACTTGTTTACCTTCCTAGCATGG  250

seq1  GGGTGGAGCAGTGGGGAGCTTCTTGTGCTGACTTTAAAAAGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGCAGTGGGGAGCTTCTTGTGCTGACTTTAAAAAGTGTGTGTGT  300

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCACATGTTATGATGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCACATGTTATGATGCAC  350

seq1  ACATGGAAGTCAGAGGACAACCTCGGGTGTCAGCCCTCACATTCCACCCT  400
      |||||||||| | ||||||||||||||||||||||||||||||| |||||
seq2  ACATGGAAGTTATAGGACAACCTCGGGTGTCAGCCCTCACATTCTACCCT  400

seq1  ACT  403
      |||
seq2  ACT  403