BAC Information

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BAC

Clone NameB6Ng01-009K23
Chromosome4 (Build37)4 (Build37)
Map Location 147,106,190 - 147,106,914146,766,081 - 146,766,684
singlet/doubletsingletsinglet
Overlap geneLOC666640
Upstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
Downstream geneLOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K23.bB6Ng01-009K23.g
ACCDH845561DH845562
length9931,142
definitionDH845561|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K23, 5' end.DH845562|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,106,190 - 147,106,914)(146,766,081 - 146,766,684)
sequence
gaattcaggcattactatctactaaatagagttagaaatctcagggcaag
cttagcaaagtaagtttagaattcttactatagttatatatggcagacta
cattacttaatagaagaaagtccccaacaaaatcacttagaataacagcc
cagtcactcacatttacaagaatttacaatgctttaggaagtaggtcgag
atgtggtttaaggaggaactagagtattgcattattcatgacaaggttac
ctagaacagaactccctagcacatactttcactagcccagaagcatagca
tagttagatatttactaagagctggctggtggtgggctaaacaataaatg
agaattagaactatggtttgggcaagaaaggaccagccctgggaacataa
tgacctcacacctggcttttagatatatagctgaccttagatagagatga
ctttgtctcagttgttacattacctagttcctgtcagtctttatgtatgc
atttttcttttttgtgtaaagagtcattaagcatcgggtaacctcaatgt
accttgggtgatgtgtcacctaacttccttattttcttctgtatcataag
tctgatgcttcctttgagaaattacattcagatcaacactctcttgtgtt
tgcatctgtttgtcaccctgctgattccttcatgcctgtgtaccaggact
ctgattctcccgagagttgaggggaccctgcgagttgaggggccgactga
gtccagtccacagcactggtgatttaacacagccaggaaggcactgcacg
ggtgaagcatacatgggcatggggcagcacaggtccccataggtcactgt
cagcttcctaagatagccattgggatgtctacagacaaaccctgttaatg
tgttcagtttgtaatgccacgttggggtgagtaccttacatcatccaacg
actaacacttggcagcagtcgcaacatggtgtccgtcttcgag
gaattcatacaggagagaaactgtacaaatgcagtgaatgtgacaaatgc
tttacccaacaatgccatcttagtattcatcagaaaattcattcagaaga
gaaccttacaaatgcaatgaatgcgacaaatgctttactgacaaacacag
tctgagaaggcatcagataattcatacaggagagaaaccttacaaatgta
atgaatgtgacaaatcctttactgaaaatggctgtctgagaattcatcag
agaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatg
ctttactaaaaaatccagtttgaggattcatcagagatttcatacaggag
agaaaccttacaaatgtagtgaatgtgacaaatgttttattcaaaaatgc
agtatgataattcatcagagaattcatacaggagagaaaccttacaaatg
tagtgaatgtgacaaagctttactgagaaagtcagatggcatcagagaac
tcatacaggggagaattcttacagatgtattgaatgtgacaaatgttttg
cccagaaatcctatcttgtttttaatcacagaaatcatacattaaagaag
ccttacaaatgtagtcaatgtgacaaatgattttcccacaaacttagtct
gagaatgcatcagagaattcatacagtagagaaaatttacaaaaatgcag
tgaatgtgataaatgctttactaataaaggcagactgagaattaatcaga
taatttatacatttaaaaaaaaaccttacaagtattttgtatgtgataaa
tgcagtacccacaacatcagtctgacaaatcaacaaatatttcaaacagt
agagcaacattataaatgaaatgaatgagataatcctttaacaagaaata
tcatcttaaaatcactggagaattttccaaaagggaacttttcaatacat
tgatggtttgaatcctttatttggtctatcctctagatgtacagataatt
ataaggcaagaattttaacaaatataatatatgctggaattcttggactt
catttcagttgcaaaaaatatgtaaaatttttttatggaaaaaagttctc
ctggggaaattgcatatgggttatccgggtaaatcttttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147106190_147106914
seq2: B6Ng01-009K23.b_316_1041

seq1  AGCACATACTTTCACTAGCCCAGAAGCATAGCATAGTTAGATATTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATACTTTCACTAGCCCAGAAGCATAGCATAGTTAGATATTTACTA  50

seq1  AGAGCTGGCTGGTGGTGGGCTAAACAATAAATCAGAATTAGAACTATGGC  100
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  AGAGCTGGCTGGTGGTGGGCTAAACAATAAATGAGAATTAGAACTATGGT  100

seq1  TTGGGCAAGAAAGGACTTGCCCTGGGAACATAATGACCTCACATCTGGCT  150
      ||||||||||||||||  ||||||||||||||||||||||||| ||||||
seq2  TTGGGCAAGAAAGGACCAGCCCTGGGAACATAATGACCTCACACCTGGCT  150

seq1  TTTAGGAATATAGCTGACCTTAGATAGAGATGACTTTGTCTCAGTTGTTA  200
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATATATAGCTGACCTTAGATAGAGATGACTTTGTCTCAGTTGTTA  200

seq1  TGTTACTTAGTTCCTGTCAGTCTTTATGTATGCATTCTTCTGTTTTGTGT  250
        |||| ||||||||||||||||||||||||||||| |||| ||||||||
seq2  CATTACCTAGTTCCTGTCAGTCTTTATGTATGCATTTTTCTTTTTTGTGT  250

seq1  AAAGAGTCATTAAGCATCGGGTAACCTCAACGTACCTTGGGTGATGTGTC  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGAGTCATTAAGCATCGGGTAACCTCAATGTACCTTGGGTGATGTGTC  300

seq1  ACCTAACTTCCTTATTTTCTTCTGTATCATAAGTCTGATGCTTCCTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACTTCCTTATTTTCTTCTGTATCATAAGTCTGATGCTTCCTTTGA  350

seq1  GAAATTACATTCAGATCAACACTCTTTTATGTTTGCATCTGTTTGTCACC  400
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  GAAATTACATTCAGATCAACACTCTCTTGTGTTTGCATCTGTTTGTCACC  400

seq1  CCACTGACTCCTTCACGCCTGTGTACCAGGATCCTGAGTCTCCCGACACT  450
      |  |||| ||||||| |||||||||||||||  |||| |||||||| | |
seq2  CTGCTGATTCCTTCATGCCTGTGTACCAGGACTCTGATTCTCCCGAGAGT  450

seq1  TAAGGGGCCCCTGTGAGTTGAGGGG----CTGAGTCCAGTCCACAGCACT  496
      | ||||| ||||| |||||||||||    |||||||||||||||||||||
seq2  TGAGGGGACCCTGCGAGTTGAGGGGCCGACTGAGTCCAGTCCACAGCACT  500

seq1  GGTGATTTAACACAGCCAGGAAGGCACTGCACAGGTGAAGCATACATAGG  546
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  GGTGATTTAACACAGCCAGGAAGGCACTGCACGGGTGAAGCATACATGGG  550

seq1  CATGGGGCAGCACAGGTTCCCATAGGTCACTGTCAGCTTCCTAAGATAGC  596
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATGGGGCAGCACAGGTCCCCATAGGTCACTGTCAGCTTCCTAAGATAGC  600

seq1  CATTGGGATGTCTACAGACAAACCCTGTTAATGTGGTCAGTTTGCTAATG  646
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  CATTGGGATGTCTACAGACAAACCCTGTTAATGTGTTCAGTTTG-TAATG  649

seq1  CCACGTTGGAGTGAGGCCCTCACTTCATCCAACGACTAGCACCATGTCAG  696
      ||||||||| |||||  ||| || |||||||||||||| || | || |||
seq2  CCACGTTGGGGTGAGTACCTTACATCATCCAACGACTAACA-CTTGGCAG  698

seq1  CAGTCCACAACATGGTGTCTGTCTCCGAG  725
      |||| | |||||||||||| |||| ||||
seq2  CAGT-CGCAACATGGTGTCCGTCTTCGAG  726

seq1: chr4_146766081_146766684
seq2: B6Ng01-009K23.g_625_1209

seq1  ATCCTATCTTGTTTTTAATCACAGAAATCATACATTAAAGAAGCCTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCTTGTTTTTAATCACAGAAATCATACATTAAAGAAGCCTTACA  50

seq1  AATGTAGTCAATGTGACAAATGATTTTCCCACAAACTTAGTCTGAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTCAATGTGACAAATGATTTTCCCACAAACTTAGTCTGAGAATG  100

seq1  CATCAGAGAATTCATACAGTAGAGAAAATTTACAAAAATGCAGTGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGAATTCATACAGTAGAGAAAATTTACAAAAATGCAGTGAATGT  150

seq1  GATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTA  200

seq1  TACATTTAAAAAAAAACCTTACAAGTATTTTGTATGTGATAAATGCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAAAAAAAAACCTTACAAGTATTTTGTATGTGATAAATGCAGTA  250

seq1  CCCACAACATCAGTCTGACAAATCAACAAATATTTCAAACAGTAGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAACATCAGTCTGACAAATCAACAAATATTTCAAACAGTAGAGCAA  300

seq1  CATTATAAATGAAATGAATGAGATAATCCTTTAACAAGAAATATCATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAAATGAAATGAATGAGATAATCCTTTAACAAGAAATATCATCTT  350

seq1  AAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGA  400
      |||| ||||||||||||| ||||||||||| |||||||| ||||||||||
seq2  AAAA-TCACTGGAGAATT-TTCCAAAAGGG-AACTTTTC-AATACATTGA  396

seq1  TGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAATGTAACAGATAATT  450
      |||||||||||||||| ||||| |||||   ||| |||| |||||||| |
seq2  TGGTTTGAATCCTTTA-TTTGGTCTATCCTCTAG-ATGT-ACAGATAA-T  442

seq1  TATACAGGCAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGA  500
      |||| |||||||||| |||||||||||||||||||||| ||| |||| ||
seq2  TATA-AGGCAAGAATTTTAACAAATATAATATATGCTGGAAT-TCTTGGA  490

seq1  CTTCATTTCAG-TGCAGAAAAAATATGTAAAATATTTTTTTATGGGAAAA  549
      ||||||||||| |||  ||||||||||||||  ||||||||||||  |||
seq2  CTTCATTTCAGTTGC--AAAAAATATGTAAA--ATTTTTTTATGG--AAA  534

seq1  AAAGTTCTCCTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTT  599
      ||||||||||||||||||  | |||||||  |||  ||||||  | ||||
seq2  AAAGTTCTCCTGGGGAAA--TTGCATATGGGTTATCCGGGTA--AATCTT  580

seq1  TTCAA  604
      |||||
seq2  TTCAA  585