BAC Information

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BAC

Clone NameB6Ng01-010B01
Chromosome4 (Build37)
Map Location 39,108,888 - 39,231,374
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039448, LOC665520, LOC100039487
Downstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010B01.bB6Ng01-010B01.g
ACCDH845841DH845842
length351891
definitionDH845841|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B01, 5' end.DH845842|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,231,025 - 39,231,374)(39,108,888 - 39,109,716)
sequence
caatacaagttaactcattctgaaagaaaatatatatgaccaatgctttg
ttgtagttttccatggggattatctgttataccataagtgtatagttagg
atttaaattttagtatcctctgtgggctcaggcatcaaagatttaggtgc
cagattatatcactgctgagagatacagggactccaaggaggttgtccct
attagaaatacatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgttattgagggcatggctttagatagatatgcagatcttgact
cctcctatctctttgtttttgatttccagctacttttttttagtgatcat
t
gaattctgtcagatactcaaggagtttttgctgagatttctgtagctcat
gatatctgcagtgtttctgttatgcacttagtccagagctttgagttcac
tcatattccagcttttttctttagcccactgagagcactatagtctactt
ggattacccacactaaagctggctttctgtgtactcttgtgaataaaaac
cgtaagtaattctcagacatatgtcatcactgttctccagcaacaactat
tattttagctgccttttgtaattaaattctctttttaaagcttataagct
atctgactatatcctttagtgtctaatgcttttctttcatttttttaatt
aggtattttcctcattcacatttccaatgctatcccaaaagtcccccata
ccctcccgccgactcccctacccacccactcccattttttggccctggcg
ttcccctgtactggggcatataaagtttgcatgtccaatgggcctctctt
tccagtgatggccgactaggccatcttttgatacatatgcagctagagtc
aagagctccggggtaatggttagttcataatgttgttccacctatagggt
tgcagatccctttagctccttgggtattttctttagctcctccatttggg
gctctgtgatccatccaatagctgactgtaagtatccacttatgtgtttg
ctaggccccggcatagtctcacaagagacagctatatcagggtcctttca
gcaaaatcttgctagtgtatgcattggtgtcagcatttggaggctgatta
tgggatggatccctggatatggcagtctctagatggtccatccttttgtc
tcagttccaaacttgtttctgtaacttcttccatgggtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_39231025_39231374
seq2: B6Ng01-010B01.b_51_401 (reverse)

seq1  AGTGATCACT-AATGCAAGTAGCTGGAAATCAAAAACAAAGAGATAGGAG  49
      | |||||||| ||   ||||||||||||||||||||||||||||||||||
seq2  AATGATCACTAAAAAAAAGTAGCTGGAAATCAAAAACAAAGAGATAGGAG  50

seq1  GAGTCAAGATCTGCATATCTCTCTAAAGCCATGCCCTCAATAACACACAC  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGTCAAGATCTGCATATCTATCTAAAGCCATGCCCTCAATAACACACAC  100

seq1  ACACACACACACACACACACACACATATATATATATATATGTATTTCTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACATATATATATATATATGTATTTCTAA  150

seq1  TAGGGACAACCTCCTTGGAGTCCCTGTATCTCTCAGCAGTGATATAATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACAACCTCCTTGGAGTCCCTGTATCTCTCAGCAGTGATATAATCT  200

seq1  GGCACCTAAATCTTTGATGCCTGAGCCCACAGAGGATACTAAAATTTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTAAATCTTTGATGCCTGAGCCCACAGAGGATACTAAAATTTAAA  250

seq1  TCCTAACTATACACTTATGGTATAACAGATAATCCCCATGGAAAACTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTATACACTTATGGTATAACAGATAATCCCCATGGAAAACTACA  300

seq1  ACAAAGCATTGGTCATATATATTTTCTTTCAGAATGAGTTAACTTGTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCATTGGTCATATATATTTTCTTTCAGAATGAGTTAACTTGTATT  350

seq1  G  350
      |
seq2  G  351

seq1: chr4_39108888_39109716
seq2: B6Ng01-010B01.g_65_893

seq1  GAATTCTGTCAGATACTCAAGGAGTTTTTGCTGAGATTTCTGTAGCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAGATACTCAAGGAGTTTTTGCTGAGATTTCTGTAGCTCAT  50

seq1  GATATCTGCAGTGTTTCTGTTATGCACTTAGTCCAGAGCTTTGAGTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTGCAGTGTTTCTGTTATGCACTTAGTCCAGAGCTTTGAGTTCAC  100

seq1  TCATATTCCAGCTTTTTTCTTTAGCCCACTGAGAGCACTATAGTCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCCAGCTTTTTTCTTTAGCCCACTGAGAGCACTATAGTCTACTT  150

seq1  GGATTACCCACACTAAAGCTGGCTTTCTGTGTACTCTTGTGAATAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACCCACACTAAAGCTGGCTTTCTGTGTACTCTTGTGAATAAAAAC  200

seq1  CGTAAGTAATTCTCAGACATATGTCATCACTGTTCTCCAGCAACAACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGTAATTCTCAGACATATGTCATCACTGTTCTCCAGCAACAACTAT  250

seq1  TATTTTAGCTGCCTTTTGTAATTAAATTCTCTTTTTAAAGCTTATAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGCTGCCTTTTGTAATTAAATTCTCTTTTTAAAGCTTATAAGCT  300

seq1  ATCTGACTATATCCTTTAGTGTCTAATGCTTTTCTTTCATTTTTTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTATATCCTTTAGTGTCTAATGCTTTTCTTTCATTTTTTTAATT  350

seq1  AGGTATTTTCCTCATTCACATTTCCAATGCTATCCCAAAAGTCCCCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTCCTCATTCACATTTCCAATGCTATCCCAAAAGTCCCCCATA  400

seq1  CCCTCCCGCCGACTCCCCTACCCACCCACTCCCATTTTTTGGCCCTGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCGCCGACTCCCCTACCCACCCACTCCCATTTTTTGGCCCTGGCG  450

seq1  TTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTT  500

seq1  TCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTC  550

seq1  AAGAGCTCCGGGGTAATGGTTAGTTCATAATGTTGTTCCACCTATAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCCGGGGTAATGGTTAGTTCATAATGTTGTTCCACCTATAGGGT  600

seq1  TGCAGATCCCTTTAGCTCCTTGGGTATTTTCTTTAGCTCCTCCATTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCCCTTTAGCTCCTTGGGTATTTTCTTTAGCTCCTCCATTTGGG  650

seq1  GCTCTGTGATCCATCCAATAGCTGACTGTAAGTATCCACTTATGTGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGATCCATCCAATAGCTGACTGTAAGTATCCACTTATGTGTTTG  700

seq1  CTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCA  750

seq1  GCAAAATCTTGCTAGTGTATGCATTGGTGTCAGCATTTGGAGGCTGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCTTGCTAGTGTATGCATTGGTGTCAGCATTTGGAGGCTGATTA  800

seq1  TGGGATGGATCCCTGGATATGGCAGTCTC  829
      |||||||||||||||||||||||||||||
seq2  TGGGATGGATCCCTGGATATGGCAGTCTC  829