BAC Information

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BAC

Clone NameB6Ng01-011L09
Chromosome6 (Build37)4 (Build37)
Map Location 15,415,073 - 15,415,805135,272,073 - 135,272,811
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpp1r3a, Foxp2, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011L09.bB6Ng01-011L09.g
ACCDH847019DH847020
length853739
definitionDH847019|Mus musculus domesticus DNA, BAC clone: B6Ng01-011L09, 5' end.DH847020|Mus musculus domesticus DNA, BAC clone: B6Ng01-011L09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,415,073 - 15,415,805)(135,272,073 - 135,272,811)
sequence
gaattctggcttccatcgtgaccctgagctggagtagctgattaaattcc
attctgttggcctgagctagataggatccagacactaacagcctgcaggt
agacaacaggcggggggtggggtggtgccactctgtttggggcctggaga
cctgtgctctggggcctttcttgaggagcttgcacctttcctctctggac
ctctggcatggagctgagactccccctcccttcccgtgtgtgcccacaga
atcttctggtttcaacctgctcaaccttaccaaactttctggcttggttt
catgtcccataactgctttgttctgtatttggtgattacaaaaccacctt
accaaattggacccaggctagtatggaggaggcagctcctcaactgaagc
tgtctccaggttttgtgtaagcttgacaaacactaaactaccatgtgaaa
tcgtgtactttgtgcattagggtttgccttgggcaatgacggatggggaa
tccacaagcccttcggaaatcagcaggcacctggaagaaaaaagtggaat
aagttgcttaagtggaagctgggttatgctttctgcttggtcagccagcg
agcattgggatttcatcttccacactttgcgtggtaacctgtagggaatg
ggaacaacatttagcactttagaagacctagccaaggtacatagtcaagg
caaaacctagacaacagatcctaatgaatgacctgctactgggtcagcca
tatagcttataggaactgaagcagaggttggcaaaggggtgactgtcatg
ttgcatgatgtttctacagaccttcagtccattcttgtgacttctctttc
tgt
gaattccagtctcctcctggttgcctgtagaagatggtctcctcctggct
gtctttggatcaaaatgtacaactctcggcacctccggtatcgtgtctgc
ctgtgtgtgctgccatagttcctgccatgatgataatggactaaacctct
gaacctgtaagccagcctcaatgaaatgttttcttttataagaattgctc
cttggtgctgtggcggtgtggttgattagggtgctgctttcaatcgtgtg
gcctttgggaaccccgcgtagccactgccgcctccttctgtcctcgccat
gttcctcactcggtccgagtacaggggtgtgaatactttttctcctgaag
gaagattatttcaagtggaatatgccattgaggctatcaagcttggttct
acagccattggcatccagaaggtgtattctcagagggtgtatgtctagct
gtggagaatagaattacctccccactaatggatcctagcagcattgagaa
gattgtacagatcaatgctcatataagatgtgccatgaatgagctaattg
ctgatgctaaaactttaattgatcaagccggagtggaggcacagaaccac
tggttcacttttcatgagaaaatgacagtcaagagtgtgacccaggctgt
gtccaatggggctctgcagtttgagaaaaaccatgcctgattgatagcta
tgtctcgtccttttggagtagcattggtgtttggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15415073_15415805
seq2: B6Ng01-011L09.b_173_896 (reverse)

seq1  ACAGAAAGAGAAGTCACAAAGAATGGACTTGAGGTCTGTAGAAAACATCA  50
      ||||||||||||||||| |||||||||||  |||||||||| ||||||||
seq2  ACAGAAAGAGAAGTCAC-AAGAATGGACTGAAGGTCTGTAG-AAACATCA  48

seq1  TGCAACATGACAGTTCACCCCTTTGCCAACCTCTTGCTTCAGTTCCTTTA  100
      ||||||||||||| ||||||||||||||||||| ||||||||||||| ||
seq2  TGCAACATGACAG-TCACCCCTTTGCCAACCTC-TGCTTCAGTTCCTATA  96

seq1  AGCTATATGGCTGACCAGTTAGCAGGTCATTCCTTAGGATCTGTTGTCTA  150
      ||||||||||||||||   ||||||||||||| |||||||||||||||||
seq2  AGCTATATGGCTGACCCAGTAGCAGGTCATTCATTAGGATCTGTTGTCTA  146

seq1  GGTTTTGCCTTGACTATGTACCTTGGCTAGGTCTTCT-AAGTGCTAAATG  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTTTTGCCTTGACTATGTACCTTGGCTAGGTCTTCTAAAGTGCTAAATG  196

seq1  TTGTTCCCATTCCCTACAGGTTACCACGCAAAGTGTGGGAGATGAAATCC  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGTTCCCATTCCCTACAGGTTACCACGCAAAGTGTGGAAGATGAAATCC  246

seq1  CAATGCTCGCTGGCTGACCAAGCAGAAAGCATAACCCAGCTTCCACTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCGCTGGCTGACCAAGCAGAAAGCATAACCCAGCTTCCACTTAA  296

seq1  GCAACTTATTCCACTTTTTTCTTCCAGGTGCCTGCTGATTTCCTGAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAACTTATTCCACTTTTTTCTTCCAGGTGCCTGCTGATTTCC-GAAGGG  345

seq1  CTTGTGGATTCCCCATCCGTCATTCCCCAAGGCAAACCCTAATGCACAAA  399
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTGTGGATTCCCCATCCGTCATTGCCCAAGGCAAACCCTAATGCACAAA  395

seq1  GTACACGATTTCACATGGTAGTTTAGTGTTTGTCAAGCTTACACAAAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACGATTTCACATGGTAGTTTAGTGTTTGTCAAGCTTACACAAAACC  445

seq1  TGGAGACAGCTTCAGTTGAGGAGCTGCCTCCACCATACTAGCCTGGGACC  499
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TGGAGACAGCTTCAGTTGAGGAGCTGCCTCCTCCATACTAGCCTGGGTCC  495

seq1  AATTCTGTAAGGTCGTTTTGTAATTACCAGACACAGAACAAAGCAGTTAT  549
      ||||  ||||||| |||||||||| |||| | ||||||||||||||||||
seq2  AATTTGGTAAGGTGGTTTTGTAATCACCAAATACAGAACAAAGCAGTTAT  545

seq1  GGGACATGAAACCATGCCAGAAAGTTTGGTAAGGTTGAGCAGGTTGAAAC  599
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGACATGAAACCAAGCCAGAAAGTTTGGTAAGGTTGAGCAGGTTGAAAC  595

seq1  CAGAAGATTCAGTGGGCACACACCTGAGGCTTAGGTGAGTCCCAGCTCCC  649
      |||||||||| ||||||||||||  || |    || ||||| ||||||| 
seq2  CAGAAGATTCTGTGGGCACACACGGGAAGGGAGGGGGAGTCTCAGCTCCA  645

seq1  TGCCAGACG-CCTGACTTAGAATGTGTGCAATGCTTCTCATATAAAAGAA  698
      ||||||| | || ||   || |   |||||| ||| |||      |||||
seq2  TGCCAGAGGTCCAGA--GAGGAAAGGTGCAA-GCTCCTC------AAGAA  686

seq1  ATG----TGAGCACAGGTCATTTAGGCCCCAAACAGAGT  733
      | |     ||||||||||| |  ||||||||||||||||
seq2  AGGCCCCAGAGCACAGGTC-TCCAGGCCCCAAACAGAGT  724

seq1: chr4_135272073_135272811
seq2: B6Ng01-011L09.g_66_804 (reverse)

seq1  CTCCTCCAAACAACAATGCTACTCCAAAGGGACGAGACATAGCACCTGGA  50
      |||||||||||| ||||||||||||||| ||||||||||||||   |  |
seq2  CTCCTCCAAACACCAATGCTACTCCAAAAGGACGAGACATAGC-TATCAA  49

seq1  TC-TGCAT-CTTCTTCTCCAAACTGCAGAGCCAGATTGGACACAGCCTGG  98
      ||  ||||  || |||| ||||||||||||||  ||||||||||||||||
seq2  TCAGGCATGGTTTTTCT-CAAACTGCAGAGCCCCATTGGACACAGCCTGG  98

seq1  GTCACACTCTTGACTGTCATTGTCTCATTATAGGTGAACCAGTGGTTCTG  148
      ||||||||||||||||||||| |||||| | | |||||||||||||||||
seq2  GTCACACTCTTGACTGTCATTTTCTCATGAAAAGTGAACCAGTGGTTCTG  148

seq1  TGCCTCCACTCTGGCTTTATCAATTAAAGTTTTAGCATCAGCAATTAGCC  198
      ||||||||||| ||||| ||||||||||||||||||||||||||||||| 
seq2  TGCCTCCACTCCGGCTTGATCAATTAAAGTTTTAGCATCAGCAATTAGCT  198

seq1  TACTCATGGCACAACCTATATGAGCATCGATCTCTACAATCTTCTCAATG  248
       | |||||||||| | ||||||||||| ||||| ||||||||||||||||
seq2  CATTCATGGCACATCTTATATGAGCATTGATCTGTACAATCTTCTCAATG  248

seq1  CTGCTAGGCTCCATTAGTGGGGAGGTAATTCTCTTCTCCACAGCTAGACA  298
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  CTGCTAGGATCCATTAGTGGGGAGGTAATTCTATTCTCCACAGCTAGACA  298

seq1  TACACCCTCTGAGAATACACCCTCTGGATGCCAATGGCTGTAGAACCAAG  348
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACACCCTCTGAGAATACACCTTCTGGATGCCAATGGCTGTAGAACCAAG  348

seq1  CTTGATAGCCTCAATGGCATATTCCACTTGAAATAATCTTCCTTCAGGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAGCCTCAATGGCATATTCCACTTGAAATAATCTTCCTTCAGGAG  398

seq1  AAAAAGTATTCACACCCCTGTACTCGGACCGAGTGAGGAACATGGCGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTATTCACACCCCTGTACTCGGACCGAGTGAGGAACATGGCGAGG  448

seq1  ACAGAAGGAGGCGGCAGTGGCTACGCGGGGTTCCCAAAGGCCACACGATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGAGGCGGCAGTGGCTACGCGGGGTTCCCAAAGGCCACACGATT  498

seq1  GAAAGCAGCACCCTAATCAACCACACCGCCACAGCACCAAGGAGCAACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAAGCAGCACCCTAATCAACCACACCGCCACAGCACCAAGGAGCAATTC  548

seq1  TTATAAAAGAAAACATTTCATTGAGGCTGGCTTACAGGTTCAGAGGTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGAAAACATTTCATTGAGGCTGGCTTACAGGTTCAGAGGTTTA  598

seq1  GTCCATTATCATCATGGCAGGAACTATGGCAGCACACACAGGCAGACACG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTATCATCATGGCAGGAACTATGGCAGCACACACAGGCAGACACG  648

seq1  ATACCGGAGGTGCCGAGAGTTGTACATTTTGATCCAAAGACAGCCAGGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGGAGGTGCCGAGAGTTGTACATTTTGATCCAAAGACAGCCAGGAG  698

seq1  GAGACCATCTTCTACAGGCAACCAGGAGGAGACTGGAATTC  739
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATCTTCTACAGGCAACCAGGAGGAGACTGGAATTC  739