BAC Information

Click to search

BAC

Clone NameB6Ng01-013L06
Chromosome4 (Build37)
Map Location 119,251,331 - 119,385,982
singlet/doubletdoublet
Overlap geneFoxj3, Guca2a, Guca2b
Upstream geneEbna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398
Downstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013L06.bB6Ng01-013L06.g
ACCDH848453DH848454
length1,090562
definitionDH848453|Mus musculus domesticus DNA, BAC clone: B6Ng01-013L06, 5' end.DH848454|Mus musculus domesticus DNA, BAC clone: B6Ng01-013L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,384,873 - 119,385,982)(119,251,331 - 119,251,898)
sequence
gaattcatttctatcagaaactaacagataaagtagagttaaaaaattgt
tgtggttagagtaaatctgaaaacaaaatttaaaattgagatataataca
gatttttttgagttatgaatgcaggcctcttataaaataaatcttgtatt
taatataaaaatattctaaattaaaatcccacataaacatttatacatgc
atgtgtaagcacacatttaggtaaactggctagtagctagaaagatctaa
gactatttaataaacaagacttaccctttatcagtaatgcattctgatac
tatttgttttattccagtttttagaaatcatgagttactctgaactaaat
ttatatttcagcacagtgatagatcacaacctattgtttccaaacatctt
gcaaatatataccaatgtaccacccaacagttaaagttatacattctcag
aaccggagaggtggctcaggattaacacttcttgctattctttctgagga
ctggaatccagtttccagtacccacatggcatctcacaattgcctgtaac
tccatttctaagtagatacatcatcttttcctggtttcttctgatacctg
cacgcatatgtgcatgcacagacacaagcctatacatataaataaaataa
attgcaaaataattcataaaaagttatgccttctctccagtcttaagtaa
atatcatatatagcgatatttacaagcgctttcccagtaaagtaaggccg
ggtgcttgccagcaatgactgacagtaacaaatgtcaggtgactgattgt
ctctataaccagtctcagagaacttacaaacgtgcggcaggagggagaga
ggtgactaggttctgacacaaagtgtcaacggttttcctcaacactgatc
ataattaattaggacatgacacagaaaacacatgggtgacagtgactaaa
gcatgaaacagacagtatatacgctccatggagacatcgccagacacgtg
gatggggaaaggagcgatgggacaactcaggatgatggagactcaccaac
gagcaggatctctcaagatcgtcatgagacagccaaatcc
ctttagaaatagtgattaaatactcacctgaaagatacgtggctaatata
ttaagacatagtgggtggattgggagtggaagcgagtgggaaagaatttt
gttcctaaaactaaagattcccagaaaggttctgataccatttgcctcca
gcagaacttcagtatctttagacctagaaacatttatacctgaacatttc
tatggggaccaaagctgggtgtggtagaacatgcctttgattccagcact
gggaggttggaggcaggtagatttctgtgactttgaggtcagtgtggtct
tggtctatgtagtgaatttgaattccagaacagctagagctgtgcagtaa
gactgaaacaaaacaacaagagcagagagagacagagacagagacaccag
ggctggagagatgctcagtggttaagagcactggctgttcttccagaaac
cctgagttcagttcccagcaatcatatggtcacaaccatctgtaatggga
tctgatgccctcttctggtgcatctgaagacagccactgtgtactctcat
acattcatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119384873_119385982
seq2: B6Ng01-013L06.b_46_1135 (reverse)

seq1  GGATTTTGGGCTGTCTCCATGACGATCTTGGAGAGGATCCCTGGCTCCGT  50
      ||||||  |||||||| |||||||||||| |||| |||||   ||| |||
seq2  GGATTT--GGCTGTCT-CATGACGATCTT-GAGA-GATCC--TGCT-CGT  42

seq1  TGGGTGAGTCTCCCATCACTCCTGAGTGTGTCCCATCGCTCCCTTTCCCC  100
      | ||||||||| |||||| |||||||| |||||||||||| |||||||||
seq2  T-GGTGAGTCT-CCATCA-TCCTGAGT-TGTCCCATCGCT-CCTTTCCCC  87

seq1  CTTTCCACGGTGTCTGGCGATGTTCTCCATGGAGGCGTATATACTGTCTG  150
         ||||| ||||||||||||| |||||||||| ||||||||||||||||
seq2  --ATCCAC-GTGTCTGGCGATG-TCTCCATGGA-GCGTATATACTGTCTG  132

seq1  TTTCATGCTTTTAGTCACTGTCACCCATGTTGTTTTCTGTGTCATGTCCT  200
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCATGC-TTTAGTCACTGTCACCCATG-TGTTTTCTGTGTCATGTCCT  180

seq1  AATTAATTATGATCAGTGTTGAGGAAAACCGTTGACACTTTGTGTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTATGATCAGTGTTGAGGAAAACCGTTGACACTTTGTGTCAGAA  230

seq1  CCTAGTCACCTCTCTCCCTCCTGCCGCACGTTTGTAAGTTCTCTGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCACCTCTCTCCCTCCTGCCGCACGTTTGTAAGTTCTCTGAGACT  280

seq1  GGTTATAGAGACAATCAGTCACCTGACATTTGTTACTGTCAGTCATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAGAGACAATCAGTCACCTGACATTTGTTACTGTCAGTCATTGCT  330

seq1  GGCAAGCACCCGGCCTTACTTTACTGGGAAAGCGCTTGTAAATATCGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCACCCGGCCTTACTTTACTGGGAAAGCGCTTGTAAATATCGCTA  380

seq1  TATATGATATTTACTTAAGACTGGAGAGAAGGCATAACTTTTTATGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATATTTACTTAAGACTGGAGAGAAGGCATAACTTTTTATGAATT  430

seq1  ATTTTGCAATTTATTTTATTTATATGTATAGGCTTGTGTCTGTGCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCAATTTATTTTATTTATATGTATAGGCTTGTGTCTGTGCATGCA  480

seq1  CATATGCGTGCAGGTATCAGAAGAAACCAGGAAAAGATGATGTATCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCGTGCAGGTATCAGAAGAAACCAGGAAAAGATGATGTATCTACT  530

seq1  TAGAAATGGAGTTACAGGCAATTGTGAGATGCCATGTGGGTACTGGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGGAGTTACAGGCAATTGTGAGATGCCATGTGGGTACTGGAAAC  580

seq1  TGGATTCCAGTCCTCAGAAAGAATAGCAAGAAGTGTTAATCCTGAGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCCAGTCCTCAGAAAGAATAGCAAGAAGTGTTAATCCTGAGCCAC  630

seq1  CTCTCCGGTTCTGAGAATGTATAACTTTAACTGTTGGGTGGTACATTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGGTTCTGAGAATGTATAACTTTAACTGTTGGGTGGTACATTGGT  680

seq1  ATATATTTGCAAGATGTTTGGAAACAATAGGTTGTGATCTATCACTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGCAAGATGTTTGGAAACAATAGGTTGTGATCTATCACTGTGC  730

seq1  TGAAATATAAATTTAGTTCAGAGTAACTCATGATTTCTAAAAACTGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATAAATTTAGTTCAGAGTAACTCATGATTTCTAAAAACTGGAAT  780

seq1  AAAACAAATAGTATCAGAATGCATTACTGATAAAGGGTAAGTCTTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATAGTATCAGAATGCATTACTGATAAAGGGTAAGTCTTGTTTA  830

seq1  TTAAATAGTCTTAGATCTTTCTAGCTACTAGCCAGTTTACCTAAATGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGTCTTAGATCTTTCTAGCTACTAGCCAGTTTACCTAAATGTGT  880

seq1  GCTTACACATGCATGTATAAATGTTTATGTGGGATTTTAATTTAGAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACACATGCATGTATAAATGTTTATGTGGGATTTTAATTTAGAATAT  930

seq1  TTTTATATTAAATACAAGATTTATTTTATAAGAGGCCTGCATTCATAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTAAATACAAGATTTATTTTATAAGAGGCCTGCATTCATAACT  980

seq1  CAAAAAAATCTGTATTATATCTCAATTTTAAATTTTGTTTTCAGATTTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATCTGTATTATATCTCAATTTTAAATTTTGTTTTCAGATTTAC  1030

seq1  TCTAACCACAACAATTTTTTAACTCTACTTTATCTGTTAGTTTCTGATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCACAACAATTTTTTAACTCTACTTTATCTGTTAGTTTCTGATAG  1080

seq1  AAATGAATTC  1110
      ||||||||||
seq2  AAATGAATTC  1090

seq1: chr4_119251331_119251898
seq2: B6Ng01-013L06.g_67_634

seq1  GAATTCCTTTAGAAATAGTGATTAAATACTCACCTGAAAGATACGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAGAAATAGTGATTAAATACTCACCTGAAAGATACGTGGCT  50

seq1  AATATATTAAGACATAGTGGGTGGATTGGGAGTGGAAGCGAGTGGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAAGACATAGTGGGTGGATTGGGAGTGGAAGCGAGTGGGAAAG  100

seq1  AATTTTGTTCCTAAAACTAAAGATTCCCAGAAAGGTTCTGATACCATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTCCTAAAACTAAAGATTCCCAGAAAGGTTCTGATACCATTTG  150

seq1  CCTCCAGCAGAACTTCAGTATCTTTAGACCTAGAAACATTTATACCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCAGAACTTCAGTATCTTTAGACCTAGAAACATTTATACCTGAA  200

seq1  CATTTCTATGGGGACCAAAGCTGGGTGTGGTAGAACATGCCTTTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATGGGGACCAAAGCTGGGTGTGGTAGAACATGCCTTTGATTCC  250

seq1  AGCACTGGGAGGTTGGAGGCAGGTAGATTTCTGTGACTTTGAGGTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGAGGTTGGAGGCAGGTAGATTTCTGTGACTTTGAGGTCAGTG  300

seq1  TGGTCTTGGTCTATGTAGTGAATTTGAATTCCAGAACAGCTAGAGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGGTCTATGTAGTGAATTTGAATTCCAGAACAGCTAGAGCTGTG  350

seq1  CAGTAAGACTGAAACAAAACAACAAGAGCAGAGAGAGACAGAGACAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGACTGAAACAAAACAACAAGAGCAGAGAGAGACAGAGACAGAGA  400

seq1  CACCAGGGCTGGAGAGATGCTCAGTGGTTAAGAGCACTGGCTGTTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGCTGGAGAGATGCTCAGTGGTTAAGAGCACTGGCTGTTCTTCC  450

seq1  AGAAACCCTGAGTTCAGTTCCCAGCAATCATATGGTCACAACCATCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGAGTTCAGTTCCCAGCAATCATATGGTCACAACCATCTGTA  500

seq1  ATGGGATCTGATGCCCTCTTCTGGTGCATCTGAAGACAGCCACAGTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGGGATCTGATGCCCTCTTCTGGTGCATCTGAAGACAGCCACTGTGTAC  550

seq1  TCACATACATACATACAT  568
      || ||||||| |||||||
seq2  TCTCATACATTCATACAT  568