BAC Information

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BAC

Clone NameB6Ng01-014H23
Chromosome4 (Build37)
Map Location 131,904,557 - 132,058,890
singlet/doubletdoublet
Overlap geneSnhg3, Phactr4, Med18, Sesn2
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1
Downstream geneAtpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014H23.bB6Ng01-014H23.g
ACCDH849020DH849021
length635765
definitionDH849020|Mus musculus domesticus DNA, BAC clone: B6Ng01-014H23, 5' end.DH849021|Mus musculus domesticus DNA, BAC clone: B6Ng01-014H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,904,557 - 131,905,186)(132,058,123 - 132,058,890)
sequence
gaattccagtaaacatttggtgtgaaggttgtcttagagatatgaccaag
taagacttaaaacagggccaggcgtggtggcacatgcctttaatcccagc
actccggaggcagaggcaggcagatttctgagttcgaggccagcctggtc
tacaaagtgagttccagggcagccagggctatacagagaaaccctgtctt
gaaaaacaaacaaacaaacaaacaaagacttaaaacagggctggagagat
ggctcagcagttaaaagctctgactgctcttctagagggtcagagttcaa
ttcccagtaaccacatggcggctcacaaccatctgtaatgagatccgatg
ccctcttctggtgtgtctgaacagctacagtgtgctcatatgcataaatc
ttatggggtgaggttggggacttaaaagcaatgaatgatgcttaaagtct
gcacatatatgaactttgggtatcaccctactgccttcccagatgtgcat
tttctgggtatctcaatacttacggtaaacttataggggtattatctgtc
atgatcttatccagtgcaccccaggaaaccacccatggtcctttcccatt
tcttaagggacttttttgagagccagctgtgtttg
gaattctttctactatacaagtcctctgggaccaccaagaccctggcttt
ctggggacaggcgacagaaagctgtgacttgcttccttgggcccctccca
tgcagccagactggatttctggatcctggctgagtccctgagcagctcag
ctttgattctgttatcttttgcccatttgctatgcagggatctaagtgtt
ccccctggctcctccattcaggctggtattataccaagaagatagtttag
aaactcagtgtccttcagggctggagaagggggctagagagctcacagaa
agtccttcgtcctcccgtccgccaaataaccactgtgtttcccgtaggag
catcgggagggccaggctcggcgaggctctcgagggcccagcgctttcat
tccagtggaagaggtgagtttggaagtgggggcagttaggagtcttcagt
ccctaggagcaaaggataaaaaacgggaagcttgggatcttttctttccc
cactcctgatttatgtaatttcttttcttttcttttttttcaagacagag
tttctctgtatattcttttttttttttttttttttttggtttttcgagac
agggtttctctgtatagccctgctgtcctggacttcactttgtagaccag
gctggcctcgactcagaaatccgcctgctctgcctcccgagtgctgggat
taaaggcgtgcgccaccacgcccggcctcttctttttttttttttttagg
tttatattattatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131904557_131905186
seq2: B6Ng01-014H23.b_49_683

seq1  GAATTCCAGTAAACATTTGGTGTGAAGGTTGTCTTAGAGATATGACCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAAACATTTGGTGTGAAGGTTGTCTTAGAGATATGACCAAG  50

seq1  TAAGACTTAAAACAGGGCCAGGCGTGGTGGCACATGCCTTTAATCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTAAAACAGGGCCAGGCGTGGTGGCACATGCCTTTAATCCCAGC  100

seq1  ACTCCGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC  150

seq1  TACAAAGTGAGTTCCAGGGCAGCCAGGGCTATACAGAGAAACCCTGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAGGGCAGCCAGGGCTATACAGAGAAACCCTGTCTT  200

seq1  GAAAAACAAACAAACAAACAAACAAAGACTTAAAACAGGGCTGGAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAACAAACAAACAAACAAAGACTTAAAACAGGGCTGGAGAGAT  250

seq1  GGCTCAGCAGTTAAAAGCTCTGACTGCTCTTCTAGAGGGTCAGAGTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCAGTTAAAAGCTCTGACTGCTCTTCTAGAGGGTCAGAGTTCAA  300

seq1  TTCCCAGTAACCACATGGCGGCTCACAACCATCTGTAATGAGATCCGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTAACCACATGGCGGCTCACAACCATCTGTAATGAGATCCGATG  350

seq1  CCCTCTTCTGGTGTGTCTGAACAGCTACAGTGTGCTCATATGCATAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGTGTGTCTGAACAGCTACAGTGTGCTCATATGCATAAATC  400

seq1  TTATGGGGTGAGGTTGGGGACTTAAAAGCAATGAATGATGCTTAAAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGTGAGGTTGGGGACTTAAAAGCAATGAATGATGCTTAAAGTCT  450

seq1  GCACATATATGAAC-TTGGGTATCACCCTACTGCCTTCCCAGATGTGCAT  499
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCACATATATGAACTTTGGGTATCACCCTACTGCCTTCCCAGATGTGCAT  500

seq1  TTTCTGGGTATCTCAATACTTACAGTAAACTTATA-GGGTATTATCTGTC  548
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  TTTCTGGGTATCTCAATACTTACGGTAAACTTATAGGGGTATTATCTGTC  550

seq1  ATGATCTTATCCAGTGCACCCCAGG-AACCACCCATGGT-CATTCCCATT  596
      ||||||||||||||||||||||||| ||||||||||||| | ||||||||
seq2  ATGATCTTATCCAGTGCACCCCAGGAAACCACCCATGGTCCTTTCCCATT  600

seq1  TCTCAAGGGAC-TTTTTGAAGCCCAGCTGTGTGTG  630
      ||| ||||||| |||||||   |||||||||| ||
seq2  TCTTAAGGGACTTTTTTGAGAGCCAGCTGTGTTTG  635

seq1: chr4_132058123_132058890
seq2: B6Ng01-014H23.g_68_832 (reverse)

seq1  ATATAATAA-ATAAATCT-TAAAAAAAAAAAAAGAAGA-GCCGGGCGTGG  47
      ||||||||| ||||| ||  |||||||||||||||||| |||||||||||
seq2  ATATAATAATATAAACCTAAAAAAAAAAAAAAAGAAGAGGCCGGGCGTGG  50

seq1  TGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTT  97
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGA-GCAGGCGGATTT  99

seq1  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAAGTCCAGGACAGCCAGG  147
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGAG-TCGAGGCCAGCCTGGTCTACAAAGTGAAGTCCAGGACAG-CAGG  147

seq1  GCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAA  197
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  GCTATACAGAGAAACCCTGTCTCGAAAAACC---AAAAAAAAAAAAAAAA  194

seq1  AAAAAAGAATATACAGAGAAACTCTGTCTTGAAAAAAAAGAAAAGAAAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATATACAGAGAAACTCTGTCTTGAAAAAAAAGAAAAGAAAAG  244

seq1  AAATTACATAAATCAGGAGTGGGGAAAGAAAAGATCCCAAGCTTCCCGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACATAAATCAGGAGTGGGGAAAGAAAAGATCCCAAGCTTCCCGTT  294

seq1  TTTTATCCTTTGCTCCTAGGGACTGAAGACTCCTAACTGCCCCCACTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCTTTGCTCCTAGGGACTGAAGACTCCTAACTGCCCCCACTTCC  344

seq1  AAACTCACCTCTTCCACTGGAATGAAAGCGCTGGGCCCTCGAGAGCCTCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACCTCTTCCACTGGAATGAAAGCGCTGGGCCCTCGAGAGCCTCG  394

seq1  CCGAGCCTGGCCCTCCCGATGCTCCTACGGGAAACACAGTGGTTATTTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCCTGGCCCTCCCGATGCTCCTACGGGAAACACAGTGGTTATTTGG  444

seq1  CGGACGGGAGGACGAAGGACTTTCTGTGAGCTCTCTAGCCCCCTTCTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACGGGAGGACGAAGGACTTTCTGTGAGCTCTCTAGCCCCCTTCTCCA  494

seq1  GCCCTGAAGGACACTGAGTTTCTAAACTATCTTCTTGGTATAATACCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAGGACACTGAGTTTCTAAACTATCTTCTTGGTATAATACCAGC  544

seq1  CTGAATGGAGGAGCCAGGGGGAACACTTAGATCCCTGCATAGCAAATGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGAGGAGCCAGGGGGAACACTTAGATCCCTGCATAGCAAATGGG  594

seq1  CAAAAGATAACAGAATCAAAGCTGAGCTGCTCAGGGACTCAGCCAGGATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATAACAGAATCAAAGCTGAGCTGCTCAGGGACTCAGCCAGGATC  644

seq1  CAGAAATCCAGTCTGGCTGCATGGGAGGGGCCCAAGGAAGCAAGTCACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCAGTCTGGCTGCATGGGAGGGGCCCAAGGAAGCAAGTCACAG  694

seq1  CTTTCTGTCGCCTGTCCCCAGAAAGCCAGGGTCTTGGTGGTCCCAGAGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCGCCTGTCCCCAGAAAGCCAGGGTCTTGGTGGTCCCAGAGGA  744

seq1  CTTGTATAGTAGAAAGAATTC  768
      |||||||||||||||||||||
seq2  CTTGTATAGTAGAAAGAATTC  765