BAC Information

Click to search

BAC

Clone NameB6Ng01-016B05
Chromosome4 (Build37)
Map Location 58,793,271 - 58,916,657
singlet/doubletdoublet
Overlap geneOlfr267, AI314180
Upstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711
Downstream geneLOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016B05.bB6Ng01-016B05.g
ACCDH850158DH850159
length918929
definitionDH850158|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B05, 5' end.DH850159|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,793,271 - 58,794,191)(58,915,722 - 58,916,657)
sequence
gaattctgtttatgctgagggtgcttatccacaaataaaacatcttcatt
cccgtgtatctactaaaattagattatttaaatgagtctaaatgttatag
ctgtttacattgctaagaataaagaaatactaaaattttttatgtttatt
tttcagtgagaaatcagagctgtaaggaactgtgctattttgtgaaaact
tgaatctcctctgtacatagacaacgtactttgtttattcagaacactct
tctataccatcgatatgaacaattataaatgccttggagtacatttttct
atctcagtacttaactatatcaactgtattattaaaggcctgccccaata
atttctagtattgaaatatgtaagtgtgtgtctttctattgtgaaagtat
agtgactgaggttttaaagttccttgctaactaaacaggtcaattataaa
ttcctaccatcaccaatactcaaagaatattgtggaaaaggaggggaagg
aatgtaagagccaaacagtgtggaaagtgctgtgagatgccatcttctgg
acatggtgtagttaccacaataatgatctcacagcaggtgtgtacctgca
caagattgagccagataaattactggcatgtatagagtagatgattgcca
gactccactccctactaaggagatgttgtcagtagatagttactgggaag
ggataatcattttattagtattattattattattattattattattatta
ttatggatatggccactggcgggttccccattctccagaagatggtccca
catttttgcacataagcataactggatgtactggctggttttgtgtcttc
ttgacactatgaagttttcacccctgaaggagcttcacttgaggaaatgc
ctccatgacatcagctgc
gaattcttatgtagtatctccctcaagcttgcttttgtaagccaaagtga
tccttctgctcactatcttattaaaattaatttctacctggttgcctgcc
agctgcgggttctgaggagaaaggccattttagaggagggagtgtttgtg
aacttaagagtgtttgtttattaggaatctggcacttaactcactgcatc
ttataagttgatgaggactcttgttaaatcatctggtccagctatcaagc
tgccttcatgatttctttgctttcctgtgtgtatgtgtgaagagttaagg
agttgaaggcagtaaggaaataatcttgtaggcagctgaggtgagcagga
agggggatccttctaatggatcatactgtgttggtagggagtttaaagcg
gtctggcatcttataccgaaggctaggatttgatgcataccaggaaatag
attcttaactttgccttgcttgaggagttagctactagttcttgtagata
caatacccatgacttttcctgaggaatgcaataatgtttctccacacctt
aacatgaaccaatggcaagccaaagaaattctgcccaggtttatcttggc
gaaacaaggaatttatttgggcttcttactggagcctgggtgagggacta
cttacaggaatgactcaaaggtacctgctggattgcaaagcatgtcaatt
ttcatgacagttcatgaaaatcaagttcttagagctccctgacagacttg
ggccaagtgctgcatggatactctccttttctctgtaattgtttactgct
tatgtaactggggaagaaatataatgttttgggctcctgagcctccagag
tttcatagcttcgtgagtcttaatgagggaatgttgggtttggagaaaat
acgatatacaggacttcttaatgggcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58793271_58794191
seq2: B6Ng01-016B05.b_39_956

seq1  GAATTCTGTTTATGCTGAGGGTGCTTATCCACAAATAAAACATCTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTATGCTGAGGGTGCTTATCCACAAATAAAACATCTTCATT  50

seq1  CCCGTGTATCTACTAAAATTAGATTATTTAAATGAGTCTAAATGTTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGTATCTACTAAAATTAGATTATTTAAATGAGTCTAAATGTTATAG  100

seq1  CTGTTTACATTGCTAAGAATAAAGAAATACTAAAATTTTTTATGTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACATTGCTAAGAATAAAGAAATACTAAAATTTTTTATGTTTATT  150

seq1  TTTCAGTGAGAAATCAGAGCTGTAAGGAACTGTGCTATTTTGTGAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGAGAAATCAGAGCTGTAAGGAACTGTGCTATTTTGTGAAAACT  200

seq1  TGAATCTCCTCTGTACATAGACAACGTACTTTGTTTATTCAGAACACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCCTCTGTACATAGACAACGTACTTTGTTTATTCAGAACACTCT  250

seq1  TCTATACCATCGATATGAACAATTATAAATGCCTTGGAGTACATTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCATCGATATGAACAATTATAAATGCCTTGGAGTACATTTTTCT  300

seq1  ATCTCAGTACTTAACTATATCAACTGTATTATTAAAGGCCTGCCCCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTACTTAACTATATCAACTGTATTATTAAAGGCCTGCCCCAATA  350

seq1  ATTTCTAGTATTGAAATATGTAAGTGTGTGTCTTTCTATTGTGAAAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTATTGAAATATGTAAGTGTGTGTCTTTCTATTGTGAAAGTAT  400

seq1  AGTGACTGAGGTTTTAAAGTTCCTTGCTAACTAAACAGGTCAATTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGAGGTTTTAAAGTTCCTTGCTAACTAAACAGGTCAATTATAAA  450

seq1  TTCCTACCATCACCAATACTCAAAGAATATTGTGGAAAAGGAGGGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCATCACCAATACTCAAAGAATATTGTGGAAAAGGAGGGGAAGG  500

seq1  AATGTAAGAGCCAAACAGTGTGGAAAGTGCTGTGAGATGCCATCTTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGAGCCAAACAGTGTGGAAAGTGCTGTGAGATGCCATCTTCTGG  550

seq1  ACATGGTGTAGTTACCACAATAATGATCTCACAGCAGGTGTGTACCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGTAGTTACCACAATAATGATCTCACAGCAGGTGTGTACCTGCA  600

seq1  CAAGATTGAGCCAGATAAATTACTGGCATGTATAGAGTAGATGATTGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGAGCCAGATAAATTACTGGCATGTATAGAGTAGATGATTGCCA  650

seq1  GACTCCACTCCCTACTAAGGAGATGTTGTCAGTAGATAGTTACTGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACTCCCTACTAAGGAGATGTTGTCAGTAGATAGTTACTGGGAAG  700

seq1  GGATAATCATTTTATTATTATTATTATTATTATTATTATTATTATTATTA  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGATAATCATTTTATTAGTATTATTATTATTATTATTATTATTATTATTA  750

seq1  TTATGGATATGGCCACTGGTGGGTTCCCCATTCTCCAGTAGATGGTCCCA  800
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TTATGGATATGGCCACTGGCGGGTTCCCCATTCTCCAGAAGATGGTCCCA  800

seq1  CATTTTTGCACATTAGCACTAACTGGATGTACTGGCTGGTTTTGTGTCAA  850
      ||||||||||||| |||| |||||||||||||||||||||||||||||  
seq2  CATTTTTGCACATAAGCA-TAACTGGATGTACTGGCTGGTTTTGTGTCTT  849

seq1  CTTGACACAGCTGAAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAAT  900
      ||||||||   ||||||| ||||     ||||||||||| ||||||||||
seq2  CTTGACAC-TATGAAGTTTTCACCCCTGAAGGAGCTTCACTTGAGGAAAT  898

seq1  GCCTCCATGAGATCCAGCTGC  921
      |||||||||| || |||||||
seq2  GCCTCCATGACAT-CAGCTGC  918

seq1: chr4_58915722_58916657
seq2: B6Ng01-016B05.g_67_995 (reverse)

seq1  AATGCCCAATTAAGAAAGTCCTTGTTATATCGTTATTTTCTCCAAACCCA  50
      ||||||| |||||| |||||||   ||||||| |||||||||||||||| 
seq2  AATGCCC-ATTAAG-AAGTCCT--GTATATCG-TATTTTCTCCAAACCC-  44

seq1  AACATTCCCTCATTAAGACTCACGAAGCTAATGAAACTCTGGAGGCTCAG  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACATTCCCTCATTAAGACTCACGAAGCT-ATGAAACTCTGGAGGCTCAG  93

seq1  GAGCCCAAAACATTATATTTCTTCCCCAGTTACATAAGCAGTAAACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAAAACATTATATTTCTTCCCCAGTTACATAAGCAGTAAACAATT  143

seq1  ACAGAGAAAAGGAGAGTATCCATGCAGCACTTGGCCCAAGTCTGTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAAAGGAGAGTATCCATGCAGCACTTGGCCCAAGTCTGTCAGGG  193

seq1  AGCTCTAAGAACTTGATTTTCATGAACTGTCATGAAAATTGACATGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAAGAACTTGATTTTCATGAACTGTCATGAAAATTGACATGCTTT  243

seq1  GCAATCCAGCAGGTACCTTTGAGTCATTCCTGTAAGTAGTCCCTCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCAGCAGGTACCTTTGAGTCATTCCTGTAAGTAGTCCCTCACCCA  293

seq1  GGCTCCAGTAAGAAGCCCAAATAAATTCCTTGTTTCGCCAAGATAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGTAAGAAGCCCAAATAAATTCCTTGTTTCGCCAAGATAAACCT  343

seq1  GGGCAGAATTTCTTTGGCTTGCCATTGGTTCATGTTAAGGTGTGGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAATTTCTTTGGCTTGCCATTGGTTCATGTTAAGGTGTGGAGAAA  393

seq1  CATTATTGCATTCCTCAGGAAAAGTCATGGGTATTGTATCTACAAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGCATTCCTCAGGAAAAGTCATGGGTATTGTATCTACAAGAACT  443

seq1  AGTAGCTAACTCCTCAAGCAAGGCAAAGTTAAGAATCTATTTCCTGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAACTCCTCAAGCAAGGCAAAGTTAAGAATCTATTTCCTGGTAT  493

seq1  GCATCAAATCCTAGCCTTCGGTATAAGATGCCAGACCGCTTTAAACTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAATCCTAGCCTTCGGTATAAGATGCCAGACCGCTTTAAACTCCC  543

seq1  TACCAACACAGTATGATCCATTAGAAGGATCCCCCTTCCTGCTCACCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACACAGTATGATCCATTAGAAGGATCCCCCTTCCTGCTCACCTCA  593

seq1  GCTGCCTACAAGATTATTTCCTTACTGCCTTCAACTCCTTAACTCTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTACAAGATTATTTCCTTACTGCCTTCAACTCCTTAACTCTTCAC  643

seq1  ACATACACACAGGAAAGCAAAGAAATCATGAAGGCAGCTTGATAGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACAGGAAAGCAAAGAAATCATGAAGGCAGCTTGATAGCTGGA  693

seq1  CCAGATGATTTAACAAGAGTCCTCATCAACTTCTAAGATGCAGTGAGTTA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCAGATGATTTAACAAGAGTCCTCATCAACTTATAAGATGCAGTGAGTTA  743

seq1  AGTGCCAGATTCCTAATAAACAAACACTCTTAAGTTCACAAACACTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGATTCCTAATAAACAAACACTCTTAAGTTCACAAACACTCCCT  793

seq1  CCTCTAAAATGGCCTTTCTCCTCAGAACCCGCAGCTGGCAGGCAACCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAATGGCCTTTCTCCTCAGAACCCGCAGCTGGCAGGCAACCAGG  843

seq1  TAGAAATTAATTTTAATAAGATAGTGAGCAGAAGGATCACTTTGGCTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAATTTTAATAAGATAGTGAGCAGAAGGATCACTTTGGCTTAC  893

seq1  AAAAGCAAGCTTGAGGGAGATACTACATAAGAATTC  936
      ||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGCTTGAGGGAGATACTACATAAGAATTC  929