BAC Information

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BAC

Clone NameB6Ng01-018O21
Chromosome4 (Build37)
Map Location 58,152,702 - 58,316,232
singlet/doubletdoublet
Overlap geneSvep1, Musk
Upstream geneEpb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8
Downstream geneEdg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018O21.bB6Ng01-018O21.g
ACCDH852184DH852185
length1,0271,064
definitionDH852184|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O21, 5' end.DH852185|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,315,213 - 58,316,232)(58,152,702 - 58,153,764)
sequence
gaattcattgttaactttacaagttcagtcacttttaatttttattatag
aaaatgcaccaaggcttataacaaaaggaaagccaagtggtatatatatt
gtgattaaagttggcaaagcttaccaaatttatagtttgtttcagttatt
tgatgtatcttgacaactatgcattgcttcccacggagtgtgttgggcct
ggtaggatgagtctgtcatctcattcttggtgagatgaagccgtgaagat
gattataatatataaaaacactttattaagctgggtgtggtggcgcacac
ctttgagcccagcatttgggaggcagaggcaggaggatttctgagttcaa
ggccagcctggtctacaaagtgagttgcaggacagccagggctatacaga
gaaaccctgtctccaaacaaacaaacaaacaaaaacactttattagtaac
caaggagacaacatacaagagcatacaagctaacccaatgaatagctaat
tttttgtaaacgtgtgtgtcattatagtatatctatctacatgtctgtgc
agttatacatgtgtgtgcatccatgtggcaagaagagggcatccgatgtc
atgatcttctactctctactttgttcctttgatatcttcactgagcctgg
agtcaggctgtcggccagcaagccacgtgatcttcctgtctcctcccgca
gcactgtagtcacaagctcacatgtatgtggggtgcatatgagctcaggt
ttctcatgcaagcaagcactctgatccatgaaacccagcacaaattaaca
gagctttaccctaacttctgttttgttactgagatgtgtttgtgtctatt
ttatcattctgagtctctgtgctctagtatctgttttctctcagtttctt
cctttcaattcttcatttctcttctccagaaacgaccagttctaaaactt
tgggtgtttagttcagctttgttatgcctaaggtttaaaacagttgatgt
gactatgatgacctatgctgctgctgc
gaattccttttaggtagcacccattggtttccttcagttctttagggaaa
gatacctaacagaagacaaacaaaaggaccctacaaaagagctacattca
gctggactgcagacagcactgttcagcactgccaggcggaagactgagga
gcggtccccaaaggatcctcaacgtggcatttggaaatcaagaatatcag
gaggattctcactgtgcttttatgcacgagcaagttttttttctcttttt
ctttaatgcaagaatgtgtatttgtttattttgaaacctttaaaagagta
ggaaagaaaggtcatgaaaaatattcaagtgcatatatatatttactggt
tactggcagaatttatttcgtgggaactcatccaaatcacatcagttggc
agagcataaatattaagtgaattaaatataagtttcagatttattactct
atagaggaaattcaataattaagtgagaggataaatatgagatcctgtcc
tgtgctatcgctgggacaatttgggctgaaggtaaataataataaaatac
ttatcaatgtactctgcctgccacacaggactgttactgaatgtggccac
tgcacagagtgccgtgtttgctgctgggttggtttaaagggggagagaga
tacatttctataattgagatatataaaatggaaaatcacaccaagcaact
gcttttagcttcagttaaaaagagaaatactcaaaaaacaaaccacagct
tccaaagctaagatgaattggatttgtaacatcttctcattggttactca
tggcaaattagagtgggtgtcacagatacgagcttgtgttgcttctcaaa
tgttggtttttaataaactttattgctccttagggaaaacaaagcaaaca
cattcatttctactcatgtcttaaacgtttttttacctcttcattcagag
taagtatttttgccatttttcatgggacacattaattactcgattcagct
ctcatttcttttgtgtctcttaatttaacactggttcaaagaaattttct
tatgttaatccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58315213_58316232
seq2: B6Ng01-018O21.b_45_1071 (reverse)

seq1  GCAGCAGCAGCATA-GTCATCATAGTCAACATCAACTGTTTTAAACCTTA  49
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  GCAGCAGCAGCATAGGTCATCATAGTC-ACATCAACTGTTTTAAACCTTA  49

seq1  GGCATAACAAAGCTGAACT-AACACCC-AAGTTTTAGAACTGGTCGTTTC  97
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GGCATAACAAAGCTGAACTAAACACCCAAAGTTTTAGAACTGGTCGTTTC  99

seq1  TGGGAGAAGAGAAATG-AGGATTGGAAGGAAGAAACTGAGAGAAAACAGA  146
      | |||||||||||||| || |||| |||||||||||||||||||||||||
seq2  T-GGAGAAGAGAAATGAAGAATTGAAAGGAAGAAACTGAGAGAAAACAGA  148

seq1  TACTAGAGCACAGAGACTCAGAATGAT-AAATAGACACAAACACATCTCA  195
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACTAGAGCACAGAGACTCAGAATGATAAAATAGACACAAACACATCTCA  198

seq1  GTAAC-AAACAGAAGTTAGGTTAAAGCTCTGTT-ATTTGTGCTGGGTTTC  243
      ||||| |||||||||||||| |||||||||||| ||||||||||||||||
seq2  GTAACAAAACAGAAGTTAGGGTAAAGCTCTGTTAATTTGTGCTGGGTTTC  248

seq1  ATGGATCAGAGTGCTTGCTTGCATGAG-AACCTGAGCTCATATGCA-CCC  291
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  ATGGATCAGAGTGCTTGCTTGCATGAGAAACCTGAGCTCATATGCACCCC  298

seq1  ACATACATGTGAGCTTGTGACTACAGTGCTGCGGGAGGAGACAGGAAGAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTGAGCTTGTGACTACAGTGCTGCGGGAGGAGACAGGAAGAT  348

seq1  CACGTGGCTTGCTGGCCGACAGCCTGACTCCAGGCTCAGTGAAGATATCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGCTTGCTGGCCGACAGCCTGACTCCAGGCTCAGTGAAGATATCA  398

seq1  AAGGAACAAAGTAGAGAGTAGAAGATCATGACATCGGATGCCCTCTTCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAAAGTAGAGAGTAGAAGATCATGACATCGGATGCCCTCTTCTT  448

seq1  GCCACATGGATGCACACACATGTATAACTGCACAGACATGTAGATAGATA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGGATGCACACACATGTATAACTGCACAGACATGTAGATAGATA  498

seq1  TACTATAATGACACACACGTTTACAAAAAATTAGCTATTCATTGGGTTAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAATGACACACACGTTTACAAAAAATTAGCTATTCATTGGGTTAG  548

seq1  CTTGTATGCTCTTGTATGTTGTCTCCTTGGTTACTAATAAAGTGTTTTTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGCTCTTGTATGTTGTCTCCTTGGTTACTAATAAAGTGTTTTTG  598

seq1  TTTGTTTGTTTGTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  648

seq1  TGCAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTCCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTCCTG  698

seq1  CCTCTGCCTCCCAAATGCTGGGCTCAAAGGTGTGCGCCACCACACCCAGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCAAATGCTGGGCTCAAAGGTGTGCGCCACCACACCCAGC  748

seq1  TTAATAAAGTGTTTTTATATATTATAATCATCTTCACGGCTTCATCTCAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAGTGTTTTTATATATTATAATCATCTTCACGGCTTCATCTCAC  798

seq1  CAAGAATGAGATGACAGACTCATCCTACCAGGCCCAACACACTCCGTGGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGAGATGACAGACTCATCCTACCAGGCCCAACACACTCCGTGGG  848

seq1  AAGCAATGCATAGTTGTCAAGATACATCAAATAACTGAAACAAACTATAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGCATAGTTGTCAAGATACATCAAATAACTGAAACAAACTATAA  898

seq1  ATTTGGTAAGCTTTGCCAACTTTAATCACAATATATATACCACTTGGCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAAGCTTTGCCAACTTTAATCACAATATATATACCACTTGGCTT  948

seq1  TCCTTTTGTTATAAGCCTTGGTGCATTTTCTATAATAAAAATTAAAAGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTTATAAGCCTTGGTGCATTTTCTATAATAAAAATTAAAAGTG  998

seq1  ACTGAACTTGTAAAGTTAACAATGAATTC  1020
      |||||||||||||||||||||||||||||
seq2  ACTGAACTTGTAAAGTTAACAATGAATTC  1027

seq1: chr4_58152702_58153764
seq2: B6Ng01-018O21.g_69_1132

seq1  GAATTCCTTTTAGGTAGCACCCATTGGTTTCCTTCAGTTCTTTAGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTAGGTAGCACCCATTGGTTTCCTTCAGTTCTTTAGGGAAA  50

seq1  GATACCTAACAGAAGACAAACAAAAGGACCCTACAAAAGAGCTACATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTAACAGAAGACAAACAAAAGGACCCTACAAAAGAGCTACATTCA  100

seq1  GCTGGACTGCAGACAGCACTGTTCAGCACTGCCAGGCGGAAGACTGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACTGCAGACAGCACTGTTCAGCACTGCCAGGCGGAAGACTGAGGA  150

seq1  GCGGTCCCCAAAGGATCCTCAACGTGGCATTTGGAAATCAAGAATATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCCCCAAAGGATCCTCAACGTGGCATTTGGAAATCAAGAATATCAG  200

seq1  GAGGATTCTCACTGTGCTTTTATGCACGAGCAAGTTTTTTTTCTCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCTCACTGTGCTTTTATGCACGAGCAAGTTTTTTTTCTCTTTTT  250

seq1  CTTTAATGCAAGAATGTGTATTTGTTTATTTTGAAACCTTTAAAAGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGCAAGAATGTGTATTTGTTTATTTTGAAACCTTTAAAAGAGTA  300

seq1  GGAAAGAAAGGTCATGAAAAATATTCAAGTGCATATATATATTTACTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGGTCATGAAAAATATTCAAGTGCATATATATATTTACTGGT  350

seq1  TACTGGCAGAATTTATTTCGTGGGAACTCATCCAAATCACATCAGTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCAGAATTTATTTCGTGGGAACTCATCCAAATCACATCAGTTGGC  400

seq1  AGAGCATAAATATTAAGTGAATTAAATATAAGTTTCAGATTTATTACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAAATATTAAGTGAATTAAATATAAGTTTCAGATTTATTACTCT  450

seq1  ATAGAGGAAATTCAATAATTAAGTGAGAGGATAAATATGAGATCCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAAATTCAATAATTAAGTGAGAGGATAAATATGAGATCCTGTCC  500

seq1  TGTGCTATCGCTGGGACAATTTGGGCTGAAGGTAAATAATAATAAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATCGCTGGGACAATTTGGGCTGAAGGTAAATAATAATAAAATAC  550

seq1  TTATCAATGTACTCTGCCTGCCACACAGGACTGTTACTGAATGTGGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATGTACTCTGCCTGCCACACAGGACTGTTACTGAATGTGGCCAC  600

seq1  TGCACAGAGTGCCGTGTTTGCTGCTGGGTTGGTTTAAAGGGGGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAGTGCCGTGTTTGCTGCTGGGTTGGTTTAAAGGGGGAGAGAGA  650

seq1  TACATTTCTATAATTGAGATATATAAAATGGAAAATCACACCAAGCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTATAATTGAGATATATAAAATGGAAAATCACACCAAGCAACT  700

seq1  GCTTTTAGCTTCAGTTAAAAAGAGAAATACTCAAAAAACAAACCACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTTTTAGCTTCAGTTAAAAAGAGAAATACTCAAAAAACAAACCACAGC-  749

seq1  TTCCAAAGCTAAGATGAATTGGATTTGTAACATC-TCTCA-TGGGTACTC  798
      |||||||||||||||||||||||||||||||||| ||||| ||| |||||
seq2  TTCCAAAGCTAAGATGAATTGGATTTGTAACATCTTCTCATTGGTTACTC  799

seq1  AGGGCAAATTAGAGTGGGTGTCACAGATACGAGC-TGTGTTGCTTCTCAA  847
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGGCAAATTAGAGTGGGTGTCACAGATACGAGCTTGTGTTGCTTCTCAA  849

seq1  ATGTTGGTTTTTAATAAACTTCTATTGCTCCTTAGGGAAAACAAAGCAAA  897
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGTTGGTTTTTAATAAACTT-TATTGCTCCTTAGGGAAAACAAAGCAAA  898

seq1  CACAGTCATTTCTACTCATGTCTTAAACGTTTTTATA-CTCTTCATTCAA  946
      |||| ||||||||||||||||||||||||||||| || |||||||||| |
seq2  CACATTCATTTCTACTCATGTCTTAAACGTTTTTTTACCTCTTCATTC-A  947

seq1  GAGTAAGTATTTATTGCCATTTTTCATAGGTACACATTTAATTACTCGAT  996
      |||||||||||| |||||||||||||| || ||||| |||||||||||||
seq2  GAGTAAGTATTT-TTGCCATTTTTCAT-GGGACACA-TTAATTACTCGAT  994

seq1  TCAGCTCACAATTCTTT--TGTTTCTTAATTT-ACACTTGTTTCAAAGAA  1043
      ||||||| || ||||||  ||| ||||||||| |||| || |||||||||
seq2  TCAGCTCTCATTTCTTTTGTGTCTCTTAATTTAACAC-TGGTTCAAAGAA  1043

seq1  A--TTCCTATGGTTAATCCAGA  1063
      |  ||| ||| |||||||||||
seq2  ATTTTCTTAT-GTTAATCCAGA  1064