BAC Information

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BAC

Clone NameB6Ng01-019M07
Chromosome4 (Build37)
Map Location 146,164,956 - 146,432,150
singlet/doubletdoublet
Overlap geneOTTMUSG00000010694, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
Upstream geneLOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, LOC626480
Downstream geneLOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M07.bB6Ng01-019M07.g
ACCDH852760DH852761
length9721,131
definitionDH852760|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M07, 5' end.DH852761|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,431,195 - 146,432,150)(146,164,956 - 146,165,963)
sequence
gaattctctgatgaatactcagactaacttggtgggtaaagcatttgtca
cattcactacatttgtaaggtttctttcctgtatgaattctctcatgatt
actaagaagggattgttgcataaagcatttgttacattcaatgcatttgt
aagttttctctcctgtatgaattctctgatgcatactaagattgaatttg
tgtttaaaacatttgtcactttcattacatttataaaatttctctccagt
atgaattttctgatggataccaagatagaatttttgtgtaaagcatttgt
cactttcactatatttgtaagatttctttcctggataaattctctgctga
ctttgaagattgtcactctgagtaaagcatttgtcaaattcaccacaagt
gtaagtgttcatttcactattgttttgtctcacaatgggtttatgtttag
aaaccaaaacctcatcaagatttttatttctgttgtgttctttcttctct
atgtgggttccttgattgagactaatgatagaagacacctttaaacggtt
tacacagtctttatacctgcaaacttctttagtggtcccagttttatgtc
tttttaggtttgaagattgaagagtggcatctctgtggttagttttatga
ggtgtactttgggaggattcatgaattatattgttagactcattacattt
taaaagacttctcttggatatgcccatgctcattgaaaatgtgctgtgtg
tcttgttccaagaccttctccttctcatagtttccacatatgcagtgatt
ttctgaaaaaaagggggaatagggataacagggattacttatatgaggag
taagtatgatccaataatcactgttctatgtattcatactctcaagagag
ttttcctttttttaatcattgcatgatcctcagaagtacctcaaatctga
tctatatcaaatggcaaagtga
gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaagct
ttactgagaaagtcaatctgagaaggcatcagagaactcatacaggggag
aattcttacaaatgtattgaatgtgacaaatgttttgcccagaaatccta
tcttgtttttaatcacagaaatcatacattaaagaagccttacaaatgca
gtcaatgtgacaaatgattttcccacaaacttagtctgagaatgcatcag
agaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaa
tgctttactaataaaggcagactgagaattaatcagataatttatacatt
taaaaaaacccttacaagtattttgtatgtgataaatgcagtacccacaa
catcagtctgacaaatcaacagatatttcaaacagtagagcaacattata
aatgaaatgaatgagatagtcctttaacaagaaatatcatcttaaaattc
actggagaattcttccaaaagggaaacttttcaaatacattgacggtttg
aatcctttattttggcctatctcttagaatgtaatagataatttatacag
gcaagaatcttaacaaatataatatatgctgaaatatctttgacttcatt
tcagtgcagaaaaaatatgtaaaaaaaattttttatgggaaaaatagttc
tcctgaggaaatgtggcatatgttttacacgggtaatattcttttcaaca
gtcagtgctctaaactagagaattattatgaatctgaaaacttttgaaaa
ccttcatgcaatgttcaaatcttagataatgtcaactattatgctgggca
gtaactctgaatatatgatagtgaagaaacattttcattaacttttactt
gttcaccctcaaatattatatgatgaagtcagtgtgaagccagaagaata
tgatgttgtgcacaattcatggagatagaatgatccattccaaaaggaac
taattaagagtgtactattcgccttcaaatgtcttataaactggcagcat
tttggttatttattcaaatgaagaattgaacagattgtacttggtagtgt
atttgaacaactgagcccctagactgcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146431195_146432150
seq2: B6Ng01-019M07.b_42_1013 (reverse)

seq1  TCACTTTTGCCATTTGATATAGATCAGATTTGAGGTACTTCTGAGGATCC  50
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAC-TTTGCCATTTGATATAGATCAGATTTGAGGTACTTCTGAGGAT-C  48

seq1  ATGCAATGATTAAAAAAAGGAAAACCTCTCTTGAGAATATGAATACATAG  100
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  ATGCAATGATTAAAAAAAGGAAAA-CTCTCTTGAGAGTATGAATACATAG  97

seq1  AACAGTGATTATTGGATCATACTTACTCCTCATATAAGTAATCCCTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGATTATTGGATCATACTTACTCCTCATATAAGTAATCCCTGTTA  147

seq1  TCCCTAATTCCCCCTTTTTTCAGAAAATCACTGCATATGTGGAAACTATG  200
      |||||| | |||| ||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTCCCCCTTTTTTTCAGAAAATCACTGCATATGTGGAAACTATG  197

seq1  AGAAGGAGAAGGTCTTGGAACAAGACACACAGCACATTGTCAATGAGCAT  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAGGAGAAGGTCTTGGAACAAGACACACAGCACATTTTCAATGAGCAT  247

seq1  GGGCATAACCGAAAGAAGTCTTCT-AAATGTAATGAGCTTAGAAATGTGA  299
      ||||||| || | ||||||||| | ||||||||||||  ||  ||| | |
seq2  GGGCATATCCAAGAGAAGTCTTTTAAAATGTAATGAGTCTAACAATATAA  297

seq1  TCCATGAATCCTCCGAAAGTACACCTTATAACACTAACCACAGAGATGCC  349
      | |||||||||||| ||||||||||| |||| ||||||||||||||||||
seq2  TTCATGAATCCTCCCAAAGTACACCTCATAAAACTAACCACAGAGATGCC  347

seq1  ACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGACCACTAAAGG  399
      ||||| ||||| ||||||||||||||||||||||||||||||||||||| 
seq2  ACTCTTCAATCTTCAAACCTAAAAAGACATAAAACTGGGACCACTAAAGA  397

seq1  AGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGTCTTCTATCA  449
      ||||||||  |||||||||||||||||| ||||||||| |||||||||||
seq2  AGTTTGCAGGTATAAAGACTGTGTAAACCGTTTAAAGGTGTCTTCTATCA  447

seq1  TTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACACAACAGAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACACAACAGAAAT  497

seq1  AAAAATCTTGATGAGGTTTTGGTTTCT------------------AGACA  531
      |||||||||||||||||||||||||||                  |||||
seq2  AAAAATCTTGATGAGGTTTTGGTTTCTAAACATAAACCCATTGTGAGACA  547

seq1  AAACAATAGTGAAATGAACACTTACACTTGTGGTGAATTTGACAAATGCT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAGTGAAATGAACACTTACACTTGTGGTGAATTTGACAAATGCT  597

seq1  TTACTCAGAGTGACAATCTTCAAAGTCAGCAGAGAATTTATCCAGGAAAG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGAGTGACAATCTTCAAAGTCAGCAGAGAATTTATCCAGGAAAG  647

seq1  AAATCTTACAAATATAGTGAAAGTGACAAATGCTTTACCCAAACTTCCCA  681
      |||||||||||||||||||||||||||||||||||||| ||||  | | |
seq2  AAATCTTACAAATATAGTGAAAGTGACAAATGCTTTACACAAAAATTCTA  697

seq1  TCTTAGTATTCATCATACAATTCATTCAGGAGAGAAACCTTACAAATGTA  731
      |||| |||| ||||| | ||||||| | |||||||||  ||| |||||||
seq2  TCTTGGTATCCATCAGAAAATTCATACTGGAGAGAAATTTTATAAATGTA  747

seq1  GTGAATGCGACAAATGCTTTACTGACAAATGCACTCTGAGAAAGCATCAG  781
       |||| | |||||||| ||||   |||||| || ||| || | |||||||
seq2  ATGAAAGTGACAAATGTTTTAAACACAAATTCAATCTTAGTATGCATCAG  797

seq1  AGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATG  831
      ||||||||||||||||||||| |||||||||| | ||||||  |||||||
seq2  AGAATTCATACAGGAGAGAAAACTTACAAATGCATTGAATGTAACAAATG  847

seq1  CTTTACTGACAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAG  881
      |||||   |  ||| |  ||| || || ||| ||||||||||||||||| 
seq2  CTTTATGCAACAATCCCTTCTTAGTAATCATGAGAGAATTCATACAGGAA  897

seq1  AGAAACCTTATAAATGTAATGAATGTGACAAATGCTTTACTGACAAAGGC  931
      |||||||||| ||||||| |||||||||||||||||||||  || |||  
seq2  AGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCACCAAGTT  947

seq1  AGTCTGAGAGTTCATCAGAGAATTC  956
      ||||||||  |||||||||||||||
seq2  AGTCTGAGTATTCATCAGAGAATTC  972

seq1: chr4_146164956_146165963
seq2: B6Ng01-019M07.g_201_1199

seq1  TTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACATTAA  50

seq1  AGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAACTT  100

seq1  AGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAAAAA  150

seq1  TGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAA  200

seq1  TCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATGTGA  250

seq1  TAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTCAAA  300

seq1  CAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACAAGA  350

seq1  AATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTTTTC  400

seq1  AAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAATGT  450

seq1  AATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGCTGA  500

seq1  AATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAATATTT  550
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAAATTTT  550

seq1  TTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACACGG  600
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTATGGGAAAAATAGTTCTCCTGAGGAAATGTGGCATATGTTTTACACGG  600

seq1  GTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATGAA  650

seq1  TCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAATGT  700

seq1  CAACTATTATGCT-GGCAGTAACTCTGAATATATGATAGTGAAGAAACAT  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAACTATTATGCTGGGCAGTAACTCTGAATATATGATAGTGAAGAAACAT  750

seq1  TTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTCA  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATT-AACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTCA  799

seq1  GGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGATAG  849
       ||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  -GTGTG-AAGCCAGAAGAATATGATGTTGTGC-ACAATTCATGGAGATAG  846

seq1  AAATGATCCATTCCAAAAGGAAACTAAATAA-AGTGTACTA-TCGCCTTC  897
       ||||||||||||||||||| |||||| ||| ||||||||| ||||||||
seq2  -AATGATCCATTCCAAAAGG-AACTAATTAAGAGTGTACTATTCGCCTTC  894

seq1  AAAATGTCTAATAAAACTGGCAGCATTTTGTATATTTAATTCAAATGAAG  947
       |||||||| || |||||||||||||||||  ||||| ||||||||||||
seq2  -AAATGTCTTAT-AAACTGGCAGCATTTTGGTTATTT-ATTCAAATGAAG  941

seq1  AAATTGACACAGATTGTAGTTGATAGTGTATTTGACAAACTGAGCCACCA  997
       |||||| |||||||||| ||| ||||||||||||  ||||||||| || 
seq2  -AATTGA-ACAGATTGTACTTGGTAGTGTATTTGAACAACTGAGCC-CCT  988

seq1  AGACTGCATGT  1008
      |||||||||||
seq2  AGACTGCATGT  999