BAC Information

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BAC

Clone NameB6Ng01-023D04
Chromosome4 (Build37)
Map Location 32,802,618 - 32,921,628
singlet/doubletdoublet
Overlap geneMdn1, Lyrm2, Ankrd6
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2
Downstream geneLOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023D04.bB6Ng01-023D04.g
ACCDH855185DH855186
length1,0121,148
definitionDH855185|Mus musculus domesticus DNA, BAC clone: B6Ng01-023D04, 5' end.DH855186|Mus musculus domesticus DNA, BAC clone: B6Ng01-023D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,802,618 - 32,803,631)(32,920,469 - 32,921,628)
sequence
gaattcataatgatttatattctcaatgcattatcttcctctaggttgtc
gctgtatttaaggatgtgttcgcttccaattccatgccatatataggaac
tagacaatttcatatcactccctatgatattcaggtaaacagactggaat
aatccttttccctatgacaattttccatggcttctatgtcactacatatg
acttatatgttttcttcagattggctactcagtcctttctcgcagcagct
atgttcctcacccatcccgccggcccctgtcactcctgcaccaatcattc
cagtctctggaacccatcatgaagtgtgtgcagatgaactggatggtcat
ccttgtggggccagcctctgtgggcaagaccagcctggtccagcttctgg
cacaccttactggccacaccttaaagatcatggctatgaatagtgcaatg
gatactactgagcttctaggcggatttgagcaggtaccttcgtatacttt
gacttgaagtctggctctgggggcttttgtattggtggtgactacttgca
acagtatcctttcaccctagccaatggcttttgatgtgctctgtaaattt
caggttgatattatccgaccttggaggctactacttgagaaggtagagcg
tactgtcagggtcctgctaagggatagtcttcttatcaattctgttgaca
cggaggtagtattgcaagcctggagccattttcttctgacatataaacct
aaatgtcttggtgaagatggtaaaggtgtcactatagagattgtcacaaa
ctggaagcagtattgctgcttatgcagcgactcaataataaaatcaactc
atactccaaagcaggtatgtgtatatgctgtatacgtcatacgctctgtg
ttactggattgtgtctgtggtaggaatatattagtgagtgtcatgttgtg
tttttagtataatgtagtgatgattcctcaaggctttaatggttacttct
aaactaagcgct
gaattctcacagcacagccctgatgagccagagcagaaggaaagacagtc
ctgtgtttagataacacactgctcttatttcaacctctcctgctcagtac
agtgcatgccttgtttctccataggatataaaacactggacaatgtaatg
acagcgtgataactggaggcgggactgatgttacctgattcctgtgtact
aaccatgctttgaaatatctacaagaatgcaaataaattgctttattatc
attaaagaagagcagacctaactatggaggggcgtgtcactttggaagtt
ccctatctgggaggtggatagacgcacacaatgctgactttataaagatt
tacttcaaacttcatattctgcagatactgatctttatggcatgataata
tctgagaattagaggaagaatgaccctcagtggcctggagtgggattatt
atgagtttcaacccgaggaaaccagttctttagaatctgcaactccggga
gcaaattctgtcttgtttcccgctaatcctatcaacgctcagtggagctc
aaatgccatctctgattggtcaatgagtaagcacatgactcctaccccag
aaatagtgcaggatcctgtggccaaggtaaaaaacgtgaaggaagacaaa
aatcagagaaaacagagaagaaaggctaggaaggaccctagaagatctga
cagagaagaggtcagccccgtgctttgagcgcctacctggtgtagggctt
gctcgcagcatgcttggccccctgggggctttctgccaaacggggtgtgc
tctgaccctgcacgaccagggctgctttcatgagcttggaaccctcagtg
cttttcactgtataggagacagaaatcaaagtattttcagaacaaagatt
taggcctcagttcagatgctctgcagtgagaaaccctgaaactcggggaa
gtcgaatgcgggcagtcagactgtgtgccagcaggccagtatgttcagat
cagagtgccaactgcggtgttgctgtgcctctagtctccgcagtgtttcg
tcctttgctctctcagtagtcattcaacaactagatctgggtgacttagt
gcagcctcatgctgttctcctcgctgccgagtgaagcagccccagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_32802618_32803631
seq2: B6Ng01-023D04.b_41_1052

seq1  GAATTCATAATGATTTATATTCTCAATGCATTATCTTCCTCTAGGTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGATTTATATTCTCAATGCATTATCTTCCTCTAGGTTGTC  50

seq1  GCTGTATTTAAGGATGTGTTCGCTTCCAATTCCATGCCATATATAGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTTAAGGATGTGTTCGCTTCCAATTCCATGCCATATATAGGAAC  100

seq1  TAGACAATTTCATATCACTCCCTATGATATTCAGGTAAACAGACTGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATTTCATATCACTCCCTATGATATTCAGGTAAACAGACTGGAAT  150

seq1  AATCCTTTTCCCTATGACAATTTTCCATGGCTTCTATGTCACTACATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTTCCCTATGACAATTTTCCATGGCTTCTATGTCACTACATATG  200

seq1  ACTTATATGTTTTCTTCAGATTGGCTACTCAGTCCTTTCTCGCAGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATGTTTTCTTCAGATTGGCTACTCAGTCCTTTCTCGCAGCAGCT  250

seq1  ATGTTCCTCACCCATCCCGCCGGCCCCTGTCACTCCTGCACCAATCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTCACCCATCCCGCCGGCCCCTGTCACTCCTGCACCAATCATTC  300

seq1  CAGTCTCTGGAACCCATCATGAAGTGTGTGCAGATGAACTGGATGGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGGAACCCATCATGAAGTGTGTGCAGATGAACTGGATGGTCAT  350

seq1  CCTTGTGGGGCCAGCCTCTGTGGGCAAGACCAGCCTGGTCCAGCTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGGGCCAGCCTCTGTGGGCAAGACCAGCCTGGTCCAGCTTCTGG  400

seq1  CACACCTTACTGGCCACACCTTAAAGATCATGGCTATGAATAGTGCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTACTGGCCACACCTTAAAGATCATGGCTATGAATAGTGCAATG  450

seq1  GATACTACTGAGCTTCTAGGCGGATTTGAGCAGGTACCTTCGTATACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTACTGAGCTTCTAGGCGGATTTGAGCAGGTACCTTCGTATACTTT  500

seq1  GACTTGAAGTCTGGCTCTGGGGGCTTTTGTATTGGTGGTGACTACTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAGTCTGGCTCTGGGGGCTTTTGTATTGGTGGTGACTACTTGCA  550

seq1  ACAGTATCCTTTCACCCTAGCCAATGGCTTTTGATGTGCTCTGTAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCCTTTCACCCTAGCCAATGGCTTTTGATGTGCTCTGTAAATTT  600

seq1  CAGGTTGATATTATCCGACCTTGGAGGCTACTACTTGAGAAGGTAGAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGATATTATCCGACCTTGGAGGCTACTACTTGAGAAGGTAGAGCG  650

seq1  TACTGTCAGGGTCCTGCTAAGGGATAGTCTTCTTATCAATTCTGTTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCAGGGTCCTGCTAAGGGATAGTCTTCTTATCAATTCTGTTGACA  700

seq1  CGGAGGTAGTATTGCAAGCCTGGAGCCATTTTCTTCTGACATATAAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGTAGTATTGCAAGCCTGGAGCCATTTTCTTCTGACATATAAACCT  750

seq1  AAATGTCTTGGTGAAGATGGTAAAGGTGTCACTATAGAGATTGTCAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAATGTCTTGGTGAAGATGGTAAAGGTGTCACTATAGAGATTGTC-ACAA  799

seq1  ACTGGAAGCAGTATTGCTGCTTATGCAGCGACTCAATAATAAAATCAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGCAGTATTGCTGCTTATGCAGCGACTCAATAATAAAATCAACT  849

seq1  CATACTCCAAAGCAGGTATGTGTATATGCTGTATACGTCATACGCTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCCAAAGCAGGTATGTGTATATGCTGTATACGTCATACGCTCTGT  899

seq1  GTTACTGGATTGTTGTCTGTGGTAGGAATATATTAGTGAGTGTCATGTTG  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTACTGGATTG-TGTCTGTGGTAGGAATATATTAGTGAGTGTCATGTTG  948

seq1  TGTTTTTAGTAT-ATGTAGTGATGATTCCTCAAAGCTTTAATGTTTACTT  999
      |||||||||||| |||||||||||||||||||| ||||||||| ||||||
seq2  TGTTTTTAGTATAATGTAGTGATGATTCCTCAAGGCTTTAATGGTTACTT  998

seq1  CTAAACTAAAGCGCT  1014
      ||||||| |||||||
seq2  CTAAACT-AAGCGCT  1012

seq1: chr4_32920469_32921628
seq2: B6Ng01-023D04.g_70_1217 (reverse)

seq1  AGGCTGGGGCTGCCTCACTCTGCAAGCCGAGAGAACAGCATAGAGGCTGC  50
      ||||||||||||| |||||| || |||   ||||||||||| ||||||||
seq2  AGGCTGGGGCTGCTTCACTCGGC-AGCGAGGAGAACAGCAT-GAGGCTGC  48

seq1  ACTAAGTCACCCAGGATCTAGTTGTTGAATGACTAACTGAGAAGAAGCAA  100
      ||||||||||||| |||||||||||||||||||| |||||||   |||||
seq2  ACTAAGTCACCCA-GATCTAGTTGTTGAATGACT-ACTGAGA--GAGCAA  94

seq1  AGGACGAAACACTGCGGAGAACTAGAAGGCACAGCAACACCGCAGTTGGC  150
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  AGGACGAAACACTGCGGAG-ACTAG-AGGCACAGCAACACCGCAGTTGGC  142

seq1  ACTCTGATCTGGAACATACTGGCCTGCTGGCACAACAGTCTGGACTGCCC  200
      |||||||||| |||||||||||||||||||||| ||||||| ||||||||
seq2  ACTCTGATCT-GAACATACTGGCCTGCTGGCAC-ACAGTCT-GACTGCCC  189

seq1  GCATTCGACTTCCCCGAAGTTTCAGGGTTTCTCACTGCAGAGCATCTGAA  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCATTCGACTTCCCCG-AGTTTCAGGGTTTCTCACTGCAGAGCATCTGAA  238

seq1  CCTGAGGCCTAAATCTTTGTTCTG-AAATACTTTGATTTCTGTCTCCTAT  299
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  -CTGAGGCCTAAATCTTTGTTCTGAAAATACTTTGATTTCTGTCTCCTAT  287

seq1  ACAGTGAAAAGCACTGAGGGTTCCAAGCTCATGAAAGCAGCCCTGGTCGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAAAGCACTGAGGGTTCCAAGCTCATGAAAGCAGCCCTGGTCGT  337

seq1  GCAGGGTCAGAGCACACCCCGTTTGGCAGAAAGCCCCCAGGGGGCCAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCAGAGCACACCCCGTTTGGCAGAAAGCCCCCAGGGGGCCAAGC  387

seq1  ATGCTGCGAGCAAGCCCTACACCAGGTAGGCGCTCAAAGCACGGGGCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCGAGCAAGCCCTACACCAGGTAGGCGCTCAAAGCACGGGGCTGA  437

seq1  CCTCTTCTCTGTCAGATCTTCTAGGGTCCTTCCTAGCCTTTCTTCTCTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTCTGTCAGATCTTCTAGGGTCCTTCCTAGCCTTTCTTCTCTGT  487

seq1  TTTCTCTGATTTTTGTCTTCCTTCACGTTTTTTACCTTGGCCACAGGATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGATTTTTGTCTTCCTTCACGTTTTTTACCTTGGCCACAGGATC  537

seq1  CTGCACTATTTCTGGGGTAGGAGTCATGTGCTTACTCATTGACCAATCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTATTTCTGGGGTAGGAGTCATGTGCTTACTCATTGACCAATCAG  587

seq1  AGATGGCATTTGAGCTCCACTGAGCGTTGATAGGATTAGCGGGAAACAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCATTTGAGCTCCACTGAGCGTTGATAGGATTAGCGGGAAACAAG  637

seq1  ACAGAATTTGCTCCCGGAGTTGCAGATTCTAAAGAACTGGTTTCCTCGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTTGCTCCCGGAGTTGCAGATTCTAAAGAACTGGTTTCCTCGGG  687

seq1  TTGAAACTCATAATAATCCCACTCCAGGCCACTGAGGGTCATTCTTCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCATAATAATCCCACTCCAGGCCACTGAGGGTCATTCTTCCTC  737

seq1  TAATTCTCAGATATTATCATGCCATAAAGATCAGTATCTGCAGAATATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCAGATATTATCATGCCATAAAGATCAGTATCTGCAGAATATGA  787

seq1  AGTTTGAAGTAAATCTTTATAAAGTCAGCATTGTGTGCGTCTATCCACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAAGTAAATCTTTATAAAGTCAGCATTGTGTGCGTCTATCCACCT  837

seq1  CCCAGATAGGGAACTTCCAAAGTGACACGCCCCTCCATAGTTAGGTCTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATAGGGAACTTCCAAAGTGACACGCCCCTCCATAGTTAGGTCTGC  887

seq1  TCTTCTTTAATGATAATAAAGCAATTTATTTGCATTCTTGTAGATATTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTAATGATAATAAAGCAATTTATTTGCATTCTTGTAGATATTTC  937

seq1  AAAGCATGGTTAGTACACAGGAATCAGGTAACATCAGTCCCGCCTCCAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGGTTAGTACACAGGAATCAGGTAACATCAGTCCCGCCTCCAGT  987

seq1  TATCACGCTGTCATTACATTGTCCAGTGTTTTATATCCTATGGAGAAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACGCTGTCATTACATTGTCCAGTGTTTTATATCCTATGGAGAAACA  1037

seq1  AGGCATGCACTGTACTGAGCAGGAGAGGTTGAAATAAGAGCAGTGTGTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCACTGTACTGAGCAGGAGAGGTTGAAATAAGAGCAGTGTGTTA  1087

seq1  TCTAAACACAGGACTGTCTTTCCTTCTGCTCTGGCTCATCAGGGCTGTGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACACAGGACTGTCTTTCCTTCTGCTCTGGCTCATCAGGGCTGTGC  1137

seq1  TGTGAGAATTC  1160
      |||||||||||
seq2  TGTGAGAATTC  1148