BAC Information

Click to search

BAC

Clone NameB6Ng01-027A21
Chromosome4 (Build37)
Map Location 14,203,116 - 14,204,124
singlet/doubletsinglet
Overlap geneLOC100040030
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027A21.bB6Ng01-027A21.g
ACCDH857907DH857908
length1,0501,004
definitionDH857907|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A21, 5' end.DH857908|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttatggagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttggaataggtaaagatcctttcccaatcggttggtggtct
ttttgtcttattgatgatgtcctttgccttgcaaaagctctccaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggattttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatgtatcaattcac
aatcttctacatgataacagccagttgagccagcaccatttgttgaaaat
gatgtcttttttccactggatggtttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcactataccagtatcatgcagtttttatcacagttgct
ctgtagtacagctttaggtcgggcatggtgattccaccataggttctttt
atccttgagaaaagtttttgctatcctaggtttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattccattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttgttata
cagatctttcacctccttagttagagtcaccgccaagatattttaatatt
aattgtgaccattgaaaaggggttgtgtctcctaattcttttctacctgt
gttatcttttgtgaaaaaaggtattgaatctgttgaggtaatttataatc

gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatccgatttgggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgctttgcagaagctttgcaattttat
gaggtcccatttatcaattcttgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtacccatattttcgaggcttttccctact
ttctcctctataagtttcagtgtctctgattttatgtggagttccttaat
ccacttagacttgaataaactgtactcccccttggtgtccactcagtatt
tcagatttgtatattcattaataataattgtgaaacataacctagaaatc
aggtactatggttttaccctgctttccactttaccttttttaagaaatca
actcctttttctctatcctcagtttcccatcctgtaatttgagagaaatg
gtgctcttctctgtaggactgctgtgcagcttctgagagttggtaaggca
gcaacagtccatgccaacagtagcatggttttctagggagagattcttct
aaaatctcttctgtacatatgccagtgacccttaactcccaatcaatacc
caaaaggatcctcatgcatacttttgcatttttgtctgatttttgtatgt
tacacagctttgtagagaatgattctattcaatatgttctcatcaacact
ttaaagctacttaagtggattcactttggtgactttagagagtctgggaa
tcatcttctgaggtagtttctcatgccctatgtttaaatttgcttcccct
ctctatttatggggggatactttgatagaaaatagtaaaagaagattcat
gggattggatctggggaaagccacattaagaagactaagacctcgacggt
ggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14203116_14204124
seq2: B6Ng01-027A21.g_66_1069 (reverse)

seq1  CACCACCGTCCGACGTCTTTAGTCTTCTTAATTGGGCTTTTCCCCAGATT  50
      ||||||||| ||| ||| ||||||||||||||  ||| ||||||||||| 
seq2  CACCACCGT-CGAGGTC-TTAGTCTTCTTAATGTGGC-TTTCCCCAGAT-  46

seq1  CTCAATCCCATG-ATCTTCTTTTACTATTTTCCTATCAAAGTATCCCCCC  99
        |||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  -CCAATCCCATGAATCTTCTTTTACTATTTT-CTATCAAAGTATCCCCCC  94

seq1  ATAAATAGAGAGGGGAAGCAAATTTAAACATAGGGCATGAGAAACTACCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGAGAGGGGAAGCAAATTTAAACATAGGGCATGAGAAACTACCT  144

seq1  CAGAAGATGATTCCCAGACTCTCTAAAGTCACCAAAGTGAATCCACTTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGATTCCCAGACTCTCTAAAGTCACCAAAGTGAATCCACTTAA  194

seq1  GTAGCTTTAAAGTGTTGATGAGAACATATTGAATAGAATCATTCTCTACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTAAAGTGTTGATGAGAACATATTGAATAGAATCATTCTCTACA  244

seq1  AAGCTGTGTAACATACAAAAATCAGACAAAAATGCAAAAGTATGCATGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGTAACATACAAAAATCAGACAAAAATGCAAAAGTATGCATGAG  294

seq1  GATCCTTTTGGGTATTGATTGGGAGTTAAGGGTCACTGGCATATGTACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTTGGGTATTGATTGGGAGTTAAGGGTCACTGGCATATGTACAG  344

seq1  AAGAGATTTTAGAAGAATCTCTCCCTAGAAAACCATGCTACTGTTGGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTTTAGAAGAATCTCTCCCTAGAAAACCATGCTACTGTTGGCAT  394

seq1  GGACTGTTGCTGCCTTACCAACTCTCAGAAGCTGCACAGCAGTCCTACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTGCTGCCTTACCAACTCTCAGAAGCTGCACAGCAGTCCTACAG  444

seq1  AGAAGAGCACCATTTCTCTCAAATTACAGGATGGGAAACTGAGGATAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCACCATTTCTCTCAAATTACAGGATGGGAAACTGAGGATAGAG  494

seq1  AAAAAGGAGTTGATTTCTTAAAAAAGGTAAAGTGGAAAGCAGGGTAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGTTGATTTCTTAAAAAAGGTAAAGTGGAAAGCAGGGTAAAAC  544

seq1  CATAGTACCTGATTTCTAGGTTATGTTTCACAATTATTATTAATGAATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACCTGATTTCTAGGTTATGTTTCACAATTATTATTAATGAATAT  594

seq1  ACAAATCTGAAATACTGAGTGGACACCAAGGGGGAGTACAGTTTATTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTGAAATACTGAGTGGACACCAAGGGGGAGTACAGTTTATTCAA  644

seq1  GTCTAAGTGGATTAAGGAACTCCACATAAAATCAGAGACACTGAAACTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGTGGATTAAGGAACTCCACATAAAATCAGAGACACTGAAACTTA  694

seq1  TAGAGGAGAAAGTAGGGAAAAGCCTCGAAAATATGGGTACAGGGGAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGAAAGTAGGGAAAAGCCTCGAAAATATGGGTACAGGGGAAAAA  744

seq1  TTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATTGATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATTGATAA  794

seq1  ATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCA  844

seq1  ATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCC  894

seq1  AAATCGGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGT  944

seq1  GGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAGCTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAGCTGAA  994

seq1  CAAAGAATTC  1009
      ||||||||||
seq2  CAAAGAATTC  1004