BAC Information

Click to search

BAC

Clone NameB6Ng01-027C16
Chromosome4 (Build37)
Map Location 28,928,934 - 29,103,803
singlet/doubletdoublet
Overlap geneLOC100040907
Upstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027C16.bB6Ng01-027C16.g
ACCDH857989DH857990
length995864
definitionDH857989|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C16, 5' end.DH857990|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,928,934 - 28,929,928)(29,102,939 - 29,103,803)
sequence
gaattcccaagaacccacataaaagactggcttgaaattatgcccgaagc
cctgtttccctcactcgaaactttgtgtgctgcttctaaaatattttatc
tgtcatgcttgaaaatgagattggagaaagggttttcatttaaatgtagt
ccctagactacatgaaaatactttaaaactccacaaaaatctcatgttaa
cctaaagcaaacaaaatgactgtaatagtaatcttggttgtcaactaaac
tggatcttggatcaactgatcggcacacttctagctgggtttccctcaca
gtgggcagcacattttaggggcattacaactgtaaagtggcctggggggg
ttagactgaacaaaatgctttgtttgcctgcccaccttcacttcttgctg
gtaaatgcatctactactctgctcctgccatcagaacccagcttctccag
ctttcaataaagactaaggataagatgcagactgcataggtattcatcat
tgtggaatgaggaattgccaaactcttagtctctacaacatgcacgtaac
aactttgtgactacctagaccacattatataaaccaatctattaaatccc
ttttatacattaattttaactcttttattcttttagagagccccgactaa
gagtgtgaccctaaaatgtactctgttatttttaggagtattgaaatgta
caaatattagcataaggaacacaacaggttatttaaataactcaccattc
ttcactgtttttgtaatttgagagtactgtcttccttccttccttccttc
cttccttccttcctttctttctttctttcttttttttttccagagctaaa
ggacagaacccagggccttgtgcttgctaccactgagcttaattcccacc
ccgaatactgtctttcaatttcagaaaataaggctctttattgtttaaaa
gaagtgagtggaaaattccacgaaatttgccgtttgcatggagac
gaattcctccttccaaggaggaaacacatctatattgcatatttgatttc
ttgacctcttcaaaagtcacagcatgggatgattatgagttaataatggc
tttaattattaatccggcttcaattttgaaggaaatgtaagttcaagggc
agtttagaaagttgacgtttttaatagacattttttgtgttcttctgcct
tctgcacttatgagaggataattgcaagctgatgatttaatatgaaaaat
agatttacacatgttgacttaatttcacattcttatgactgaggcgccac
atcaatcttcctttagtaaaagggaattatatcctgggaaatcaaatttg
ttgtgagacacagtaaatagaattaagtgtattgttaagtactcgttctt
tgatgcttagagggcgatgccaccctgcagatcactctagctggatgaag
ctcacactgaaggatggctttcgaacaattaagaaattagcactaacaat
tatgtgtcatctcttctctgcagctaacagcatgattagtttatgcctaa
ttaaggacttaaatctgcaaagaatgcctggcttctgctttccagtgaat
tcctgtaggctactttctaaaccttctttggtacactagaaggtaactaa
attttaatgggagcgagtctgaaaggaacttttgctggttcacatttcca
gctaattttttaaattttcctgtctttttattttaatttgtcattttaac
tcatgcaaaggaaaaaaaggaagcaagaaagagtcagcacaaatatgttg
agagtcttccttcaccttcatataggcttctctttgtttacaaatgacca
ctactccttaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28928934_28929928
seq2: B6Ng01-027C16.b_40_1034

seq1  GAATTCCCAAGAACCCACATAAAAGACTGGCTTGAAATTATGCCCGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGAACCCACATAAAAGACTGGCTTGAAATTATGCCCGAAGC  50

seq1  CCTGTTTCCCTCACTCGAAACTTTGTGTGCTGCTTCTAAAATATTTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCCTCACTCGAAACTTTGTGTGCTGCTTCTAAAATATTTTATC  100

seq1  TGTCATGCTTGAAAATGAGATTGGAGAAAGGGTTTTCATTTAAATGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGCTTGAAAATGAGATTGGAGAAAGGGTTTTCATTTAAATGTAGT  150

seq1  CCCTAGACTACATGAAAATACTTTAAAACTCCACAAAAATCTCATGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGACTACATGAAAATACTTTAAAACTCCACAAAAATCTCATGTTAA  200

seq1  CCTAAAGCAAACAAAATGACTGTAATAGTAATCTTGGTTGTCAACTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCAAACAAAATGACTGTAATAGTAATCTTGGTTGTCAACTAAAC  250

seq1  TGGATCTTGGATCAACTGATCGGCACACTTCTAGCTGGGTTTCCCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTGGATCAACTGATCGGCACACTTCTAGCTGGGTTTCCCTCACA  300

seq1  GTGGGCAGCACATTTTAGGGGCATTACAACTGTAAAGTGGCCTGGGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGCACATTTTAGGGGCATTACAACTGTAAAGTGGCCTGGGGGGG  350

seq1  TTAGACTGAACAAAATGCTTTGTTTGCCTGCCCACCTTCACTTCTTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGAACAAAATGCTTTGTTTGCCTGCCCACCTTCACTTCTTGCTG  400

seq1  GTAAATGCATCTACTACTCTGCTCCTGCCATCAGAACCCAGCTTCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCATCTACTACTCTGCTCCTGCCATCAGAACCCAGCTTCTCCAG  450

seq1  CTTTCAATAAAGACTAAGGATAAGATGCAGACTGCATAGGTATTCATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATAAAGACTAAGGATAAGATGCAGACTGCATAGGTATTCATCAT  500

seq1  TGTGGAATGAGGAATTGCCAAACTCTTAGTCTCTACAACATGCACGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATGAGGAATTGCCAAACTCTTAGTCTCTACAACATGCACGTAAC  550

seq1  AACTTTGTGACTACCTAGACCACATTATATAAACCAATCTATTAAATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTGACTACCTAGACCACATTATATAAACCAATCTATTAAATCCC  600

seq1  TTTTATACATTAATTTTAACTC-TTTATTCTTTTAGAGAGCCCCGACTAA  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTATACATTAATTTTAACTCTTTTATTCTTTTAGAGAGCCCCGACTAA  650

seq1  GAGTGTGACCCTAAAATGTACTCTGTTATTTTTAGGAGTATTGAAATGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGACCCTAAAATGTACTCTGTTATTTTTAGGAGTATTGAAATGTA  700

seq1  CAAATATTAGCATAAGGAACACAACAGGTTATTTAAATAACTCACCATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTAGCATAAGGAACACAACAGGTTATTTAAATAACTCACCATTC  750

seq1  TTCACTGTTTTTGTAATTTGAGAGTACTGTCTTCCTTCCTTCCTTCCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTTTTGTAATTTGAGAGTACTGTCTTCCTTCCTTCCTTCCTTC  800

seq1  CTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTTTTTTTTCCAGAGCT-AA  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTTTTTTTTCCAGAGCTAAA  850

seq1  GGACAGAACCCAGGGCCTTGTGCTTGCTACCACTGAGCTTAATTCCCAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGACAGAACCCAGGGCCTTGTGCTTGCTACCACTGAGCTTAATTCCC-AC  899

seq1  CCCGAATACTGTCTTTCAAATTTCAGAGAATAAGGCTCTTTAGTGTTTAA  948
      ||||||||||||||||| ||||||||| |||||||||||||| |||||||
seq2  CCCGAATACTGTCTTTC-AATTTCAGAAAATAAGGCTCTTTATTGTTTAA  948

seq1  AAG-AGTGAGTGGAAAATTCACAGAAATTGCCAGTATGCAATGGAGAC  995
      ||| ||||||||||||||||   ||||||  | || ||| ||||||||
seq2  AAGAAGTGAGTGGAAAATTCCACGAAATTTGCCGTTTGC-ATGGAGAC  995

seq1: chr4_29102939_29103803
seq2: B6Ng01-027C16.g_68_930 (reverse)

seq1  ACCTAAGGAGTAGTGGTCATTTGTAAAACAAAGAGAAGCCTATATGAAGG  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCTAAGGAGTAGTGGTCATTTGT-AAACAAAGAGAAGCCTATATGAAGG  49

seq1  TGAAGGAAGACTCTCAACATATTTGTGCTGACCTCTTTCTTGCTTCCTTT  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAAGGAAGACTCTCAACATATTTGTGCTGA-CTCTTTCTTGCTTCCTTT  98

seq1  TTTTCCTTTGCATGAGTTAAAATGACAAATTAAAATAAAAAGACAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTGCATGAGTTAAAATGACAAATTAAAATAAAAAGACAGGAAA  148

seq1  ATTTAAAAAATTAGCTGGAAATGTGAACCAGCAAAAGTTCCTTTCAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAATTAGCTGGAAATGTGAACCAGCAAAAGTTCCTTTCAGACT  198

seq1  CGCTCCCATTAAAATTTAGTTACCTTCTAGTGTACCAAAGAAGGTTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCCATTAAAATTTAGTTACCTTCTAGTGTACCAAAGAAGGTTTAGA  248

seq1  AAGTAGCCTACAGGAATTCACTGGAAAGCAGAAGCCAGGCATTCTTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCTACAGGAATTCACTGGAAAGCAGAAGCCAGGCATTCTTTGCA  298

seq1  GATTTAAGTCCTTAATTAGGCATAAACTAATCATGCTGTTAGCTGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAGTCCTTAATTAGGCATAAACTAATCATGCTGTTAGCTGCAGAG  348

seq1  AAGAGATGACACATAATTGTTAGTGCTAATTTCTTAATTGTTCGAAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGACACATAATTGTTAGTGCTAATTTCTTAATTGTTCGAAAGCC  398

seq1  ATCCTTCAGTGTGAGCTTCATCCAGCTAGAGTGATCTGCAGGGTGGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAGTGTGAGCTTCATCCAGCTAGAGTGATCTGCAGGGTGGCATC  448

seq1  GCCCTCTAAGCATCAAAGAACGAGTACTTAACAATACACTTAATTCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTAAGCATCAAAGAACGAGTACTTAACAATACACTTAATTCTATT  498

seq1  TACTGTGTCTCACAACAAATTTGATTTCCCAGGATATAATTCCCTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTCTCACAACAAATTTGATTTCCCAGGATATAATTCCCTTTTAC  548

seq1  TAAAGGAAGATTGATGTGGCGCCTCAGTCATAAGAATGTGAAATTAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGATTGATGTGGCGCCTCAGTCATAAGAATGTGAAATTAAGTC  598

seq1  AACATGTGTAAATCTATTTTTCATATTAAATCATCAGCTTGCAATTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGTAAATCTATTTTTCATATTAAATCATCAGCTTGCAATTATCC  648

seq1  TCTCATAAGTGCAGAAGGCAGAAGAACACAAAAAATGTCTATTAAAAACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAAGTGCAGAAGGCAGAAGAACACAAAAAATGTCTATTAAAAACG  698

seq1  TCAACTTTCTAAACTGCCCTTGAACTTACATTTCCTTCAAAATTGAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTCTAAACTGCCCTTGAACTTACATTTCCTTCAAAATTGAAGCC  748

seq1  GGATTAATAATTAAAGCCATTATTAACTCATAATCATCCCATGCTGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAATAATTAAAGCCATTATTAACTCATAATCATCCCATGCTGTGAC  798

seq1  TTTTGAAGAGGTCAAGAAATCAAATATGCAATATAGATGTGTTTCCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGAGGTCAAGAAATCAAATATGCAATATAGATGTGTTTCCTCCT  848

seq1  TGGAAGGAGGAATTC  865
      |||||||||||||||
seq2  TGGAAGGAGGAATTC  863