BAC Information

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BAC

Clone NameB6Ng01-027D11
Chromosome4 (Build37)1 (Build37)
Map Location 73,086,452 - 73,087,41516,330,762 - 16,330,921
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722
Downstream geneLOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D11.bB6Ng01-027D11.g
ACCDH858024DH858025
length960971
definitionDH858024|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D11, 5' end.DH858025|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,086,452 - 73,087,415)(16,330,762 - 16,330,921)
sequence
gaattcagattatcaacctgagctaacatttcttggttacctgccaaaag
ggtacagggaagaactagagataatgagatggggtcacaaagaagtaaga
ataagcaaaagcttgacaattaagttaatattgttcaaaagatacatgtc
ttttttctctctacagatattgaagatgaggacagtgaaaaatcatggga
agtacagcgcttgtattctaaaatagcatcactgtatatatacctcataa
ttacataatcatcccagctcacacatgtgtctcctactccattagagcga
cacctcttcatagtcataattacagcctgtccatgaaaaaaatgctgaac
tcggcaggctgagttaattgctcaaattgtatagacatctgaactttgct
tcatttttcaaatgggaaaaaggaattataggggaagcaaatatctgaaa
atagctgcatgctgttgagtctcttcttctgtcacttactgggtttgctt
ggataaattactcaatgttccctctcttacagagtttaagtagcaatatt
tgatttcagagattcctggggtgataaattgggataatttagacaggtca
agaatattggtttgggaagctaacttcctggtctccagcacctcctctag
aacttaatgggctactgatcctggaaaaatcctgcaggcaactgtttttt
tttttttaaccacatacaagcaatatctattatattttaatatagctagg
taagctgctgtctgggaaaggaaatctcagtgccttgttgttagagttca
taattgatgcatccatgaaaaggatcatactgcacttcatagagatttct
tcctgtccctttactttgtcttcttaagcaattctttttaaatcactcct
caatatttattcatctctcttttacctttaagcaaaatagttgtactctc
acaaattttg
gaattccacaaaatagaaataacagagagattgtaatttattccttgagg
ccaaaataatcctaatacctcaaccacataaaaacataagaaaaaagaaa
aatagaagtcaatttctcttatgaacacagaagcaaaattttcaataaat
aattgcaaaccaaagaaaagaatacatttaaaaagatcatccatgccgga
tggtggtggctggcacatgcctttaatcccagcacttgggaggcagaggc
aggcagatttctgagttcgaggccaacctggtctacaaagtgagttccag
gacagctatacagataaaccctgcctcgaaaaacaaaaaccaaacaaaca
aaaaaatcaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaa
aacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaaaa
cacaaaacaaaagatcatccattagagatagagggatgattcatcacatt
catcacatgcaaatcaataaatatattccactacaggaacaaattgaagg
agtaaaaccacattatcatctcactcgatgcataaaatacctttgacaaa
atccaacatcccttcatgatacaagtcttagtgataaaatgtataaaaag
gaatatatacctcaaaaaatacaggtgattttaagcaagctaaagacaat
accaaccaaaataaagaggtgtacaaagcatttccactaaaatcagaaga
agacaagggtgtttaccatgcctattcaatatagtatataagtcttatct
agagcagttagaaatgtgaaggcaatcaaggagatacaaataaaaaagaa
ataagtcaaatttttgaattgaagattatgtgattttatgcataaataac
cctaggactctccagctaataacacttccatacaattagtagatacttaa
taaaatacaaaaatcaatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_73086452_73087415
seq2: B6Ng01-027D11.b_50_1009 (reverse)

seq1  CAAAATTTGTGATGAGTACAACTACTCTGCTTAAAAGTAGAAAGAGAAGA  50
      |||||||||||| ||||||||||| | |||||||| ||| |||||| |||
seq2  CAAAATTTGTGA-GAGTACAACTATTTTGCTTAAAGGTA-AAAGAG-AGA  47

seq1  TGAATAAATATTGAAGAGTGATTTAAAAAGAATTGCTTAAGAAGACAAGG  100
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  TGAATAAATATTGAGGAGTGATTTAAAAAGAATTGCTTAAGAAGACAAAG  97

seq1  TAAAGGGACAGGAAGAAATCTCTATGAAGTGCAGTATGATCCTTTTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGACAGGAAGAAATCTCTATGAAGTGCAGTATGATCCTTTTCATG  147

seq1  GATGCATCAATTATGAACTCTAACAACAAGGCACTGAGATTTCCTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATCAATTATGAACTCTAACAACAAGGCACTGAGATTTCCTTTCCC  197

seq1  AGACAGCAGCTTACCTAGCTATATTAAAATATAATAGATATTGCTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAGCTTACCTAGCTATATTAAAATATAATAGATATTGCTTGTAT  247

seq1  GTGGTTAAAAAAAAAAAAAACAGTTGCCTGCAGGATTTTTCCAGGATCAG  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTT-AAAAAAAAAAAAACAGTTGCCTGCAGGATTTTTCCAGGATCAG  296

seq1  TAGCCCATTAAGTTCTAGAGGAGGTGCTGGAGACCAGGAAGTTAGCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCATTAAGTTCTAGAGGAGGTGCTGGAGACCAGGAAGTTAGCTTCC  346

seq1  CAAACCAATATTCTTGACCTGTCTAAATTATCCCAATTTATCACCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAATATTCTTGACCTGTCTAAATTATCCCAATTTATCACCCCAGG  396

seq1  AATCTCTGAAATCAAATATTGCTACTTAAACTCTGTAAGAGAGGGAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGAAATCAAATATTGCTACTTAAACTCTGTAAGAGAGGGAACAT  446

seq1  TGAGTAATTTATCCAAGCAAACCCAGTAAGTGACAGAAGAAGAGACTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATTTATCCAAGCAAACCCAGTAAGTGACAGAAGAAGAGACTCAA  496

seq1  CAGCATGCAGCTATTTTCAGATATTTGCTTCCCCTATAATTCCTTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCAGCTATTTTCAGATATTTGCTTCCCCTATAATTCCTTTTTCC  546

seq1  CATTTGAAAAATGAAGCAAAGTTCAGATGTCTATACAATTTGAGCAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAAATGAAGCAAAGTTCAGATGTCTATACAATTTGAGCAATTA  596

seq1  ACTCAGCCTGCCGAGTTCAGCATTTTTTTCATGGACAGGCTGTAATTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCTGCCGAGTTCAGCATTTTTTTCATGGACAGGCTGTAATTATG  646

seq1  ACTATGAAGAGGTGTCGCTCTAATGGAGTAGGAGACACATGTGTGAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAGAGGTGTCGCTCTAATGGAGTAGGAGACACATGTGTGAGCTG  696

seq1  GGATGATTATGTAATTATGAGGTATATATACAGTGATGCTATTTTAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTATGTAATTATGAGGTATATATACAGTGATGCTATTTTAGAAT  746

seq1  ACAAGCGCTGTACTTCCCATGATTTTTCACTGTCCTCATCTTCAATATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCGCTGTACTTCCCATGATTTTTCACTGTCCTCATCTTCAATATCT  796

seq1  GTAGAGAGAAAAAAGACATGTATCTTTTGAACAATATTAACTTAATTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGAAAAAAGACATGTATCTTTTGAACAATATTAACTTAATTGTC  846

seq1  AAGCTTTTGCTTATTCTTACTTCTTTGTGACCCCATCTCATTATCTCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTGCTTATTCTTACTTCTTTGTGACCCCATCTCATTATCTCTAG  896

seq1  TTCTTCCCTGTACCCTTTTGGCAGGTAACCAAGAAATGTTAGCTCAGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTGTACCCTTTTGGCAGGTAACCAAGAAATGTTAGCTCAGGTT  946

seq1  GATAATCTGAATTC  964
      ||||||||||||||
seq2  GATAATCTGAATTC  960

seq1: chr1_16330762_16330921
seq2: B6Ng01-027D11.g_271_424 (reverse)

seq1  TTTTTTTGTTTTGTTTTG-TTTTGTTTTT-GAGACAGGGTTTCTCTGTAT  48
      |||||||| ||||||| | |||||||||| ||| |||||||| |||||||
seq2  TTTTTTTG-TTTGTTTGGTTTTTGTTTTTCGAGGCAGGGTTTATCTGTAT  49

seq1  AGCTCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  98
      |      ||| |||||||||||||||||||||||||| |||||||     
seq2  A------GCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCCTC-----  88

seq1  GAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGC  138

seq1  GAGGGCCA-CCAC---  160
        | |||| ||||   
seq2  ATGTGCCAGCCACCAC  154