BAC Information

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BAC

Clone NameB6Ng01-027G01
Chromosome3 (Build37)4 (Build37)
Map Location 41,058,609 - 41,058,920111,882,997 - 111,883,442
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027G01.bB6Ng01-027G01.g
ACCDH858135DH858136
length683440
definitionDH858135|Mus musculus domesticus DNA, BAC clone: B6Ng01-027G01, 5' end.DH858136|Mus musculus domesticus DNA, BAC clone: B6Ng01-027G01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,609 - 41,058,920)(111,882,997 - 111,883,442)
sequence
gaattctgcactaaaaccatctagtcttggacttttttctttgggagaat
tttaatgactggtgctatttctttaggggttatggtacctctaaaagatg
gtttatctgatcctgatttatttggtatttgatatctgtctcaaaaatta
cacatttcatccagattttttagttttgctaagtataggcctttgtagaa
ggatctgatgattttttttttaattttcccagtttctgttgttatatctc
ccttttcatttctgacttggttattttggatttagtttctgtgccctcta
cttagtctgggtaagggtttatctatcttgttgattaagatggccatttt
tactatattaatcctactaatccatgagcatgggagatatttccatcttc
tgagattttcttcaatttctttcttcagaaacttgaagttcttgtcatac
tgatctttcacttgattggttagagtcacaccaagttatttcatattatt
tgtgattattgtgaagggtgttgtttctctaatttctttctcatcctgtt
tattctttgagtagaggaaggctactgatttgtttgagttaattttatat
ttcagccactttgctgaagttgtttataaaaatgatgatcttttctggtg
gaatttttaggttcacataagtatactatcatt
taagagcaggtaaattgtcagagaccacttcatccccagcacatgtactc
taactgttaggagttacattaaaaattcaatctaaacaaccatagcatat
atgcctgcagacccatgcaggctccatgatttccacttcagtctttgtaa
gactctgtgaccctgcttaattgattgtgtggcctgtgtttttctactgc
cattggccccttttcctcctaactctcttgctctcttttatctcattctt
cccctggttcttcagatcaaatcaatgtttgtgtctactttattattgca
attctctcaccacatgttggagtagtccatttggctttcaccaatctatg
agtacagcagaataataagaatcatttcatcattcgattatccggttttt
tggggttttttttgtttgtttgtttgtttggggttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058609_41058920
seq2: B6Ng01-027G01.b_411_724 (reverse)

seq1  ATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAA-CTCCTAA  49
      |||||||||||  || |||| |||||||||||||||||| ||  || | |
seq2  ATGATAGTATACTTATGTGAACCTAAAAATTCCACCAGAAAAGATCATCA  50

seq1  GCCTGATAAACAGCTTCGGTGAAGTAGCTG-GATATAAAATTAACTCAAA  98
         | ||||||| |||| |  |||| ||||  ||||||||||||||||||
seq2  TTTTTATAAACAACTTCAGCAAAGTGGCTGAAATATAAAATTAACTCAAA  100

seq1  CAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAA  148
      ||| ||| | ||||| |||||| ||||||||||||||| |||||||||||
seq2  CAAATCAGTAGCCTTCCTCTACTCAAAGAATAAACAGGATGAGAAAGAAA  150

seq1  TTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTT  198
      |||| ||||||||||||||| ||||| ||||||||||||| ||||| |||
seq2  TTAGAGAAACAACACCCTTCACAATAATCACAAATAATATGAAATAACTT  200

seq1  GGCATGACTCTAACTAAGGAAGTGAAAGATCTGTATGACAAGAACTTCAA  248
      ||  |||||||||| ||  |||||||||||| ||||||||||||||||||
seq2  GGTGTGACTCTAACCAATCAAGTGAAAGATCAGTATGACAAGAACTTCAA  250

seq1  GTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCC  298
      || |||||||||||||||| ||||| ||||||||||||||||| ||||||
seq2  GTTTCTGAAGAAAGAAATTGAAGAAAATCTCAGAAGATGGAAATATCTCC  300

seq1  CATGCTCATGGATT  312
      ||||||||||||||
seq2  CATGCTCATGGATT  314

seq1: chr4_111882997_111883442
seq2: B6Ng01-027G01.g_66_511 (reverse)

seq1  AAAAAAACCCCAAACAAACAAACAAACAAAAAAAACCCCAAAAAACCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCCCAAACAAACAAACAAACAAAAAAAACCCCAAAAAACCGGA  50

seq1  TAATCGAATGATGAAATGATTCTTATTATTCTGCTGTACTCATAGATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGAATGATGAAATGATTCTTATTATTCTGCTGTACTCATAGATTGG  100

seq1  TGAAAGCCAAATGGACTACTCCAACATGTGGTGAGAGAATTGCAATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCAAATGGACTACTCCAACATGTGGTGAGAGAATTGCAATAATA  150

seq1  AAGTAGACACAAACATTGATTTGATCTGAAGAACCAGGGGAAGAATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGACACAAACATTGATTTGATCTGAAGAACCAGGGGAAGAATGAGA  200

seq1  TAAAAGAGAGCAAGAGAGTTAGGAGGAAAAGGGGCCAATGGCAGTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAGCAAGAGAGTTAGGAGGAAAAGGGGCCAATGGCAGTAGAAA  250

seq1  AACACAGGCCACACAATCAATTAAGCAGGGTCACAGAGTCTTACAAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGCCACACAATCAATTAAGCAGGGTCACAGAGTCTTACAAAGAC  300

seq1  TGAAGTGGAAATCATGGAGCCTGCATGGGTCTGCAGGCATATATGCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGAAATCATGGAGCCTGCATGGGTCTGCAGGCATATATGCTATG  350

seq1  GTTGTTTAGATTGAATTTTTAATGTAACTCCTAACAGTTAGAGTACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAGATTGAATTTTTAATGTAACTCCTAACAGTTAGAGTACATGT  400

seq1  GCTGGGGATGAAGTGGTCTCTGACAATTTACCTGCTCTTAGAATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGATGAAGTGGTCTCTGACAATTTACCTGCTCTTAGAATTC  446