BAC Information

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BAC

Clone NameB6Ng01-028L04
Chromosome4 (Build37)
Map Location 83,819,089 - 83,951,432
singlet/doubletdoublet
Overlap geneBnc2
Upstream geneLOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028L04.bB6Ng01-028L04.g
ACCDH859109DH859110
length1,111996
definitionDH859109|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L04, 5' end.DH859110|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,819,089 - 83,820,204)(83,950,437 - 83,951,432)
sequence
gaattctgttctgcacagtgtccttatagcacaggatccaagggtgttag
gggcactcagcacaaggagaggcttgagtcctccggatagcacaaataag
tagaaatcatgtgtattgatgattcggtgctgtttgttaaaaagcagaac
aacagcgggaaaaatgtggaatgaaatccttcaaaggcagtctttcaaag
tacataggaaggactctgggggaaaagttttaggaaggaagttgaaaatt
atggaccgtttcaaacaggaaaattgtataaatggacatttcctaaaagg
ggagtgtttaactgtgcttcatgaaagctaagaaccatattttgcaaata
ctacacttctaacttcttagtttcatcttaaatcaccttcccctgctgtc
ttccacctccaaggctgaggcacaaggctcatggccccagggatactgcc
tagaacaaagaggccattgatcagcttggatctcaaagctgacttccctg
acctcctaagcaagaaaatagtcttcaaagctaagcattgttgagaaaga
aagggattttctaaattcctttagctcccattagtgtattgagagccata
cctggtggaatagatcctagaaatttactatatgccatcgtgagagggta
gagagagggtgctcatagcctgagggattggatcacaaattcagaagggc
taagtagagatgaggcatgctgtatatgtccttgtgtcctccattcttcc
cttcagctatgggtcctgacaatgagaggtcatgttagatatatccgagc
aaggcgacagcatcaggagactaacatcatactgtctctgaggattccag
aggaagactacaaggcttaaagaagtcatctgcatggtcaccgccagcag
agtgagcagcaacggggcagctatgaaaacagagggtagcatggttatct
atcaatgcagagcctctggactctagggagagtgaaatggggtcctcgtg
ctatgaatgttctagacattctgatgtagtagatgaatacatgatcagga
tagaggtgttctcgatgcatggagaccaggaacacagccagagtgaatgc
cagcagatgac
gaattccagaagatctaagactctcggagagtaagggatgccttcagtta
caaatactcaaattctggaaaacaatttaaaagtaaaaatgctggagttt
aaaacattttaattcaaatgaattatgtttagagtgatggagcagtggag
ttctgaacctaatatcagtgggatgtttgcttacacgcggggataaaaat
taaagctggatgttggtgatgcggtagtgacagctgggcatccacaaaac
caagactgtcatttttatgtgtccttcagtcatgttctttattatttaat
gttctctgcattcaaatgcttctgttatattaagaagaattaaaatgggc
attatcagatgcagaatctattttagcctgtagacaagttcagaagtagg
tattctatgctgcaattctatgcttgtatgtaattttatagcagggggtt
aatacactagaaatactaacttataacatgggatttctctggattaaaca
ttagctcagtggtcaggagaggcactgaagtcaattcttggtctcagaat
ttaaaatttggggagtatttttttttaattttggaactcatttttcttct
tattaaacatgaaaacatactgtgtctttcagtttttctcaggtttgatt
taccatagatataggtaatttgaaaaatacttttgaatctttgaaatgta
atttttgactttattagaatttactcctctgaattttatatgtaagacac
ctgctttatttctttgcaaacaaatgcaagacatgcatatggctggttct
aatttggacagtctgaaatgccagagtacattaacaaagtcctgttgggc
cccagagcttctgtgatttactgtgctgtaacaccagggtgatctatcat
aatcatagttttaaaagttaaaacaatgtacaggttgttactgagagaaa
aggaagtagtatttctgcaaagtacatattcttgccagctgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_83819089_83820204
seq2: B6Ng01-028L04.b_42_1152

seq1  GAATTCTGTTCTGCACAGTGTCCTTATAGCACAGGATCCAAGGGTGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTGCACAGTGTCCTTATAGCACAGGATCCAAGGGTGTTAG  50

seq1  GGGCACTCAGCACAAGGAGAGGCTTGAGTCCTCCGGATAGCACAAATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTCAGCACAAGGAGAGGCTTGAGTCCTCCGGATAGCACAAATAAG  100

seq1  TAGAAATCATGTGTATTGATGATTCGGTGCTGTTTGTTAAAAAGCAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCATGTGTATTGATGATTCGGTGCTGTTTGTTAAAAAGCAGAAC  150

seq1  AACAGCGGGAAAAATGTGGAATGAAATCCTTCAAAGGCAGTCTTTCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCGGGAAAAATGTGGAATGAAATCCTTCAAAGGCAGTCTTTCAAAG  200

seq1  TACATAGGAAGGACTCTGGGGGAAAAGTTTTAGGAAGGAAGTTGAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGGAAGGACTCTGGGGGAAAAGTTTTAGGAAGGAAGTTGAAAATT  250

seq1  ATGGACCGTTTCAAACAGGAAAATTGTATAAATGGACATTTCCTAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCGTTTCAAACAGGAAAATTGTATAAATGGACATTTCCTAAAAGG  300

seq1  GGAGTGTTTAACTGTGCTTCATGAAAGCTAAGAACCATATTTTGCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTTAACTGTGCTTCATGAAAGCTAAGAACCATATTTTGCAAATA  350

seq1  CTACACTTCTAACTTCTTAGTTTCATCTTAAATCACCTTCCCCTGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTCTAACTTCTTAGTTTCATCTTAAATCACCTTCCCCTGCTGTC  400

seq1  TTCCACCTCCAAGGCTGAGGCACAAGGCTCATGGCCCCAGGGATACTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCCAAGGCTGAGGCACAAGGCTCATGGCCCCAGGGATACTGCC  450

seq1  TAGAACAAAGAGGCCATTGATCAGCTTGGATCTCAAAGCTGACTTCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAAGAGGCCATTGATCAGCTTGGATCTCAAAGCTGACTTCCCTG  500

seq1  ACCTCCTAAGCAAGAAAATAGTCTTCAAAGCTAAGCATTGTTGAGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTAAGCAAGAAAATAGTCTTCAAAGCTAAGCATTGTTGAGAAAGA  550

seq1  AAGGGATTTTCTAAATTCCTTTAGCTCCCATTAGTGTATTGAGAGCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATTTTCTAAATTCCTTTAGCTCCCATTAGTGTATTGAGAGCCATA  600

seq1  CCTGGTGGAATAGATCCTAGAAATTTACTATATGCCATCGTGAGAGGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGAATAGATCCTAGAAATTTACTATATGCCATCGTGAGAGGGTA  650

seq1  GAGAGAGGGTGCTCATAGCCTGAGGGATTGGATCACAAATTCAGAAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGTGCTCATAGCCTGAGGGATTGGATCACAAATTCAGAAGGGC  700

seq1  TAAGTAGAGATGAGGCATGCTGTATATGTCCTTGTGTCCTCCATTCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAGATGAGGCATGCTGTATATGTCCTTGTGTCCTCCATTCTTCC  750

seq1  CTTCAGCTATGGGTCCTGACAATGAGAGGTCATGTTAGATATATCCGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTATGGGTCCTGACAATGAGAGGTCATGTTAGATATATCCGAGC  800

seq1  AAGGCGACAGCATCAGGAGACTAACATCATACTGTCTCTGAGGATTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGACAGCATCAGGAGACTAACATCATACTGTCTCTGAGGATTCCAG  850

seq1  AGGAAGACTACAAGGCTTAAAGAAGTCATCTGCATGGTCACCGCCAGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACTACAAGGCTTAAAGAAGTCATCTGCATGGTCACCGCCAGCAG  900

seq1  AGTGAGCAGCAACGGGGCAGCTATGAAAACAGAGGGTAGCATGGTTATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCAGCAACGGGGCAGCTATGAAAACAGAGGGTAGCATGGTTATCT  950

seq1  ATCAATGCAGAGCCTCTGGACTCTAGGGAGAGTGAAATGGGGTCCTCGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCAGAGCCTCTGGACTCTAGGGAGAGTGAAATGGGGTCCTCGTG  1000

seq1  CTATGAATGTTCTAGACATTCTGATGTAGTAGATGAATACCATGATCAGG  1050
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTATGAATGTTCTAGACATTCTGATGTAGTAGATGAATA-CATGATCAGG  1049

seq1  ATAGAGGTGTTCTCAGATGCCATGAGACCAGGAAACACAGGCAAGAGTTG  1100
      |||||||||||||| |||||   ||||||||| |||||| || |||| ||
seq2  ATAGAGGTGTTCTC-GATGCATGGAGACCAGG-AACACA-GCCAGAG-TG  1095

seq1  AATGCCAGCAGATGAC  1116
      ||||||||||||||||
seq2  AATGCCAGCAGATGAC  1111

seq1: chr4_83950437_83951432
seq2: B6Ng01-028L04.g_65_1060 (reverse)

seq1  ACACACAGCTGGCAAGAATATGTACTTTGCAG-AATACTACTTCCTTTTC  49
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACACAGCTGGCAAGAATATGTACTTTGCAGAAATACTACTTCCTTTTC  50

seq1  TCTCAGTAACAACCTGTACATTGTTTTTAACTTTTAAAACTATGATTATG  99
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTCAGTAACAACCTGTACATTG-TTTTAACTTTTAAAACTATGATTATG  99

seq1  ATAGATCACCCTGGTGTTACAGCACAGTAAATCACAGAAGCTCTGGGGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCACCCTGGTGTTACAGCACAGTAAATCACAGAAGCTCTGGGGCC  149

seq1  CAACAGGACTTTGTTAATGTACTCTGGCATTTCAGACTGTCCAAATTAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGACTTTGTTAATGTACTCTGGCATTTCAGACTGTCCAAATTAGA  199

seq1  ACCAGCCATATGCATGTCTTGCATTTGTTTGCAAAGAAATAAAGCAGGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCATATGCATGTCTTGCATTTGTTTGCAAAGAAATAAAGCAGGTG  249

seq1  TCTTACATATAAAATTCAGAGGAGTAAATTCTAATAAAGTCAAAAATTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATATAAAATTCAGAGGAGTAAATTCTAATAAAGTCAAAAATTAC  299

seq1  ATTTCAAAGATTCAAAAGTATTTTTCAAATTACCTATATCTATGGTAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGATTCAAAAGTATTTTTCAAATTACCTATATCTATGGTAAAT  349

seq1  CAAACCTGAGAAAAACTGAAAGACACAGTATGTTTTCATGTTTAATAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGAGAAAAACTGAAAGACACAGTATGTTTTCATGTTTAATAAGA  399

seq1  AGAAAAATGAGTTCCAAAATTAAAAAAAAATACTCCCCAAATTTTAAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGAGTTCCAAAATTAAAAAAAAATACTCCCCAAATTTTAAATT  449

seq1  CTGAGACCAAGAATTGACTTCAGTGCCTCTCCTGACCACTGAGCTAATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCAAGAATTGACTTCAGTGCCTCTCCTGACCACTGAGCTAATGT  499

seq1  TTAATCCAGAGAAATCCCATGTTATAAGTTAGTATTTCTAGTGTATTAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAGAGAAATCCCATGTTATAAGTTAGTATTTCTAGTGTATTAAC  549

seq1  CCCCTGCTATAAAATTACATACAAGCATAGAATTGCAGCATAGAATACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTATAAAATTACATACAAGCATAGAATTGCAGCATAGAATACCT  599

seq1  ACTTCTGAACTTGTCTACAGGCTAAAATAGATTCTGCATCTGATAATGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAACTTGTCTACAGGCTAAAATAGATTCTGCATCTGATAATGCC  649

seq1  CATTTTAATTCTTCTTAATATAACAGAAGCATTTGAATGCAGAGAACATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATTCTTCTTAATATAACAGAAGCATTTGAATGCAGAGAACATT  699

seq1  AAATAATAAAGAACATGACTGAAGGACACATAAAAATGACAGTCTTGGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAAAGAACATGACTGAAGGACACATAAAAATGACAGTCTTGGTT  749

seq1  TTGTGGATGCCCAGCTGTCACTACCGCATCACCAACATCCAGCTTTAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATGCCCAGCTGTCACTACCGCATCACCAACATCCAGCTTTAATT  799

seq1  TTTATCCCCGCGTGTAAGCAAACATCCCACTGATATTAGGTTCAGAACTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCCGCGTGTAAGCAAACATCCCACTGATATTAGGTTCAGAACTC  849

seq1  CACTGCTCCATCACTCTAAACATAATTCATTTGAATTAAAATGTTTTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCCATCACTCTAAACATAATTCATTTGAATTAAAATGTTTTAAA  899

seq1  CTCCAGCATTTTTACTTTTAAATTGTTTTCCAGAATTTGAGTATTTGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCATTTTTACTTTTAAATTGTTTTCCAGAATTTGAGTATTTGTAA  949

seq1  CTGAAGGCATCCCTTACTCTCCGAGAGTCTTAGATCTTCTGGAATTC  996
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCATCCCTTACTCTCCGAGAGTCTTAGATCTTCTGGAATTC  996