BAC Information

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BAC

Clone NameB6Ng01-032D23
Chromosome2 (Build37)4 (Build37)
Map Location 79,816,784 - 79,817,913131,408,421 - 131,408,810
singlet/doubletsingletsinglet
Overlap genePde1a
Upstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
Downstream geneLOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032D23.bB6Ng01-032D23.g
ACCDH861639DH861640
length1,123803
definitionDH861639|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D23, 5' end.DH861640|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,816,784 - 79,817,913)(131,408,421 - 131,408,810)
sequence
gaattcagacctggaaaaagtgccattttagccatgtagtgaatggggtc
agagcaccaggtagaaggggcctaggcttctagtgaagcaagttttcttc
ttgcttgttgtagttagcacaccctattgaagtgttctcatcacatctat
ccacctgatttcaggctccattaacctgactagtgcatttctttaatcta
caatattcttcttaattcaccagaactgtacctccagctaaactctaagc
cagatctctggatctttccttgtgagagagattcagtctatctgcctgaa
aggctaataaactcatagtctaagtcttgaatgtgacttgctcaaggcta
ttttctactaagacagaactaaatagatttgtatattgttaaaggaaagg
aatcaagacttaaaaggctgtgcaaaggaggtgggacagtttgagttttt
aaaactgtgttatcatggcaccaaaataaaccaatctgtcccgataaatg
ttatattaataggcatctccaatgaggatctaggtagagtgaaatgtcat
tgctatggtgacttcagtctcaggagaattgaaaataacccatgtgagtg
cacagagcagacctttgactgacacatatatttagtcaggaggtcctttg
ctgcagaggccaggaggagtgtttcagtgcactgccgattataaaacgga
tcttataagaagaaaagggaagcctctgcaagtgagcaatttatttttta
aaatatctcaaataagcaggataaacatagcatctgtctgaaaaagacac
tttccatttctctttgccaaaactcgcaaactgacctctctaactgtggc
agcacagggcaagagagcaacacggccatgcagtcctcatggcgtaaaag
caacaacaggctgaatggaaaagctctctgtgacaggcatttgtgtttag
actttatgtcatgtttgttgtgggtttgggctgagccaaagctggtagaa
tttttagtactactatgacatgaaaggcacttgagatttctggaacctca
gtcctcagaaagaagaagatacgatctggtcaaactggtgcattctttca
gctcatggactttatagaaagtc
gaattcaatattgttttgactgaattaattccatttctaaaccaagtcat
gaaaattagtgtgtttcttgtcgagtgaaattacttgtgtcttagtcagg
gtttctgttcctgcacaaacatcatgaccaagaagcaaattggggaggaa
agagttttttcagcttatacttccatgttgctgttcatcaccaaaggaag
tcaggactgaaactcaagcaggtcagaaggcaggagctgatgcagaggcc
atgggggaatgttccttactggcttgctttccctggcttgttcagcctgc
tctcttatagaatccaagactaccagcccagagatggcaccacccacaaa
gggactgccccccttgatcactaattgagaaaatgccttagagctggatg
tcatggaggcatttcctcacctgaagctcctttctctgcgataactccag
cctgtgtcaagttgacacaaaactagccagtacaacttgttttcctggaa
ttaaattaataacatcttattttaactgttaccttttttttttttttgga
ttcaatgactttatacttatcactaattctttccttccaaggccacctaa
agaattataaacacatgcaatacatttcccatatttacatgcacatcata
tgctttttatgtcctagtctttgaaagacatttttcccctcttagctctg
tcatattatctgaccacagctttctttctaggaagactcgttaccacaat
ttggaaacttggtttcctgtgtactatgcttcgctggatcccattctttc
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79816784_79817913
seq2: B6Ng01-032D23.b_47_1169

seq1  GAATTCAGACCTGGAAAAAGTGCCATTTTAGCCATGTAGTGAATGGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCTGGAAAAAGTGCCATTTTAGCCATGTAGTGAATGGGGTC  50

seq1  AGAGCACCAGGTAGAAGGGGCCTAGGCTTCTAGTGAAGCAAGTTTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCAGGTAGAAGGGGCCTAGGCTTCTAGTGAAGCAAGTTTTCTTC  100

seq1  TTGCTTGTTGTAGTTAGCACACCCTATTGAAGTGTTCTCATCACATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTGTAGTTAGCACACCCTATTGAAGTGTTCTCATCACATCTAT  150

seq1  CCACCTGATTTCAGGCTCCATTAACCTGACTAGTGCATTTCTTTAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGATTTCAGGCTCCATTAACCTGACTAGTGCATTTCTTTAATCTA  200

seq1  CAATATTCTTCTTAATTCACCAGAACTGTACCTCCAGCTAAACTCTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCTTCTTAATTCACCAGAACTGTACCTCCAGCTAAACTCTAAGC  250

seq1  CAGATCTCTGGATCTTTCCTTGTGAGAGAGATTCAGTCTATCTGCCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGGATCTTTCCTTGTGAGAGAGATTCAGTCTATCTGCCTGAA  300

seq1  AGGCTAATAAACTCATAGTCTAAGTCTTGAATGTGACTTGCTCAAGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATAAACTCATAGTCTAAGTCTTGAATGTGACTTGCTCAAGGCTA  350

seq1  TTTTCTACTAAGACAGAACTAAATAGATTTGTATATTGTTAAAGGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTAAGACAGAACTAAATAGATTTGTATATTGTTAAAGGAAAGG  400

seq1  AATCAAGACTTAAAAGGCTGTGCAAAGGAGGTGGGACAGTTTGAGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGACTTAAAAGGCTGTGCAAAGGAGGTGGGACAGTTTGAGTTTTT  450

seq1  AAAACTGTGTTATCATGGCACCAAAATAAACCAATCTGTCCCGATAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTGTTATCATGGCACCAAAATAAACCAATCTGTCCCGATAAATG  500

seq1  TTATATTAATAGGCATCTCCAATGAGGATCTAGGTAGAGTGAAATGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAATAGGCATCTCCAATGAGGATCTAGGTAGAGTGAAATGTCAT  550

seq1  TGCTATGGTGACTTCAGTCTCAGGAGAATTGAAAATAACCCATGTGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGTGACTTCAGTCTCAGGAGAATTGAAAATAACCCATGTGAGTG  600

seq1  CACAGAGCAGACCTTTGACTGACACATATATTTAGTCAGGAGGTCCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCAGACCTTTGACTGACACATATATTTAGTCAGGAGGTCCTTTG  650

seq1  CTGCAGAGGCCAGGAGGAGTGTTTCAGTGCACTGCCGATTATAAAACGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGCCAGGAGGAGTGTTTCAGTGCACTGCCGATTATAAAACGGA  700

seq1  TCTTATAAGAAGAAAAGGGAAGCCTCTGCAAGTGAGCAATTTATTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAAGAAGAAAAGGGAAGCCTCTGCAAGTGAGCAATTTATTTTTTA  750

seq1  AAATATCTCAAATAAGCAGGATAAACATAGCATCTGTCTGAAAAAGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTCAAATAAGCAGGATAAACATAGCATCTGTCTGAAAAAGACAC  800

seq1  TTTCCATTTCTCTTTGCCAAAACTCGCAAACTGACCTCTCTAACTGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTCTCTTTGCCAAAACTCGCAAACTGACCTCTCTAACTGTGGC  850

seq1  AGCACAGGGCAAGAGAGCAACACGGCCATGCAGTCCTCATGGCGTAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGCAAGAGAGCAACACGGCCATGCAGTCCTCATGGCGTAAAAG  900

seq1  CAACAACAGGCTGAATGGAAAAGCTCTCTGTGACAGGCATTTGTGTTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAGGCTGAATGGAAAAGCTCTCTGTGACAGGCATTTGTGTTTAG  950

seq1  ACTTTATGTCATGTTTGTTGTTGGTTTTGGGCTGAGCCAAAGCTGGTAGA  1000
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  ACTTTATGTCATGTTTGTTG-TGGGTTTGGGCTGAGCCAAAGCTGGTAGA  999

seq1  ATTTTTAGTACTACTTATGACATTGAAAGGCACTTGAGATTTCTGGAACA  1050
      |||||||||||||| ||||||| ||||||||||||||||||||||||  |
seq2  ATTTTTAGTACTAC-TATGACA-TGAAAGGCACTTGAGATTTCTGGA--A  1045

seq1  CATCAGTCCTCAGAAAGAAGAAGATTACGATCT-GTCAAACT-GTGCATT  1098
      | |||||||||||||||||||||| |||||||| |||||||| |||||||
seq2  CCTCAGTCCTCAGAAAGAAGAAGA-TACGATCTGGTCAAACTGGTGCATT  1094

seq1  CCTTTCCAGCTCAATGGAC-TTATAGACAAGTC  1130
      |  || |||||| |||||| ||||||| |||||
seq2  C--TTTCAGCTC-ATGGACTTTATAGA-AAGTC  1123

seq1: chr4_131408421_131408810
seq2: B6Ng01-032D23.g_157_547 (reverse)

seq1  TACTGGCTAGTTTTGTGTCAACTTGACACA-GCTGGAGTTATCACAGAGA  49
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCGCAGAGA  50

seq1  AAGGAGCTTCAGTTGAGGAAATGCCTCCACGAGATCCAGCTGTAAGGCAT  99
      |||||||||||| |||||||||||||||| || |||||||| ||||||||
seq2  AAGGAGCTTCAGGTGAGGAAATGCCTCCATGACATCCAGCTCTAAGGCAT  100

seq1  TTTCTCAATTAGTGATCAAGGGGGGAAGGTCCCCTTGTGGGTGGTGCCAT  149
      ||||||||||||||||||||||||| | ||||| ||||||||||||||||
seq2  TTTCTCAATTAGTGATCAAGGGGGGCA-GTCCCTTTGTGGGTGGTGCCAT  149

seq1  CTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCA  199
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  CTCTGGGCTGGTAGTCTTGGATTCTATAAGAGAGCAGGCTGAACAAGCCA  199

seq1  GGGGAAGCAAGCCAGTAAAGAATATCCCTCCATGGCCTCTGCATCAGCTC  249
      ||| |||||||||||||| ||| || || |||||||||||||||||||||
seq2  GGGAAAGCAAGCCAGTAAGGAACATTCCCCCATGGCCTCTGCATCAGCTC  249

seq1  CTGCTTTCTGACCTGCTTGAGTTCCAGTCCTGATTTCC-TTGGTGATGAA  298
      |||| |||||||||||||||||| ||||||||| |||| |||||||||||
seq2  CTGCCTTCTGACCTGCTTGAGTTTCAGTCCTGACTTCCTTTGGTGATGAA  299

seq1  CAACAGTATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCT  348
      || ||  |||||||| ||||||||| |||| ||||||||||||| |||||
seq2  CAGCAACATGGAAGTATAAGCTGAAAAAACTCTTTCCTCCCCAATTTGCT  349

seq1  TCTTAGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAA  390
      |||| ||||||||||||||||||||| |||||||||||||||
seq2  TCTTGGTCATGATGTTTGTGCAGGAACAGAAACCCTGACTAA  391