BAC Information

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BAC

Clone NameB6Ng01-033D05
Chromosome4 (Build37)
Map Location 9,722,783 - 9,802,852
singlet/doubletdoublet
Overlap geneGdf6
Upstream geneChd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
Downstream gene4930448K20Rik, LOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033D05.bB6Ng01-033D05.g
ACCDH862322DH862323
length1,1401,029
definitionDH862322|Mus musculus domesticus DNA, BAC clone: B6Ng01-033D05, 5' end.DH862323|Mus musculus domesticus DNA, BAC clone: B6Ng01-033D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,801,695 - 9,802,852)(9,722,783 - 9,723,825)
sequence
gaattcacttcacacctctgtattttcaaattccagcatctgcatgacta
caggtaactcttcttttgagaaagaaggctcacaatttcagaggttcatg
gtgtcaagagatctctgcaatctgtgcctctgaaggcagtgacacatcct
agtctctgtgtgtggctaagaaaaaggttttctgttcgagtcagggactg
atagaaagggacagcaatcccacaatctcttttgagcacatacctcccaa
accaacagaacacccactagggtccaccttttcaaggtctgtacccaatc
tccccggtttttgggaccaagtcattacatgtagagtgtttatggagctc
atacaaaccatggcaggagctgagaagacatcacagagaggtgaaagttc
ctggctgcgtgagcaggatcctgttagggactgtattttgacaatagtat
cagagtgctaggaactttcgagtaattaatgtacacgtagttaaaacttc
tttctacatcgtttaatggttttagagcttgccaaacccaaaaatcagta
ttttctgttttctctcatagtttttagtttcaacaactgttagtcctcag
agtcagcagattgggagttgggtgccattctcagcctctggtaagaactc
cttctccccaccgaacctgctccctcttctggccaaccctgagagcgcgc
ggaggtacaggctcaagtctcctccttgacaaggagcaacagggtaagca
agcagatccaccggctttggaagactaaggcatgcacagccccccttcaa
gccaattatcacctttactgtaatctgctttgtgcgtttcctagcccgag
tgtacccatcctcttcactgtcactgcgtgtggggagcagtcgcgccctc
tcccgctggacgcagccaatgcggggccgccgtgatcccttcccgcccac
cggctgtcagcccaggtcagagcctgccaagccgcggtgaagagcgacag
ttcgggtcattagaaagagttgccaaagcactccgaaggtgcactataat
tttggctgtcaaaccagaaacttgaggagcggctttaagatgcaccattt
tttttttttcctccagcaatcccagcttgccgggatcagc

gaattcaaaggaaaccgattggctctcccacaagcaggatggaagatgcg
tcactttgcgtcagcagcatcgctgaaggtgtcactggcaccattcaagt
ccgatgatcaactttcacttttggctggaagggctttgttattagagttt
gtttaaactagaatccttagagtctcttttcgaatagcaccatcagcatc
tttcttagcagcaaagagctctttccctcccccttgtctgcccttaacaa
accagaccatgtctattggctgatatggacttccacacaatagcgttgtc
agactttttgaagtcttggtaactgtaaccccccaaatgagaactctgat
gagagaaaagcttcaaagatggcaactgctaataaggcacaaagtacagc
tcttttctcacatcagcaaatgataataaggcacaacctgcccccccccc
ccaaccaactaaccaaccaaccaaagaaaacctgaatgaaatgcaggtta
agaactgtaatgaaattcattttaagccatcagatttcaaggtagaaata
aagatgaacccaggatgatgaagcaaaaaaggagaagctatgtaggactt
tggagttgtaaatatcactaggcagtggccagagagtctttagttggaaa
agaaaggatgggtcagaatagcgggtaaggtgcatgttgggtgtgttgag
tttctatggcttcatgctgtccctagctaccagaaacatcaggaagacgt
atggcaaggtttcttatgcaagtatgcattgaaacacttactacccaaca
catgtttgagaagcagatgaaccaatgaatgattggttccttccggagat
gtcctccacaaaggtaggaaggtaatctgatgtctcagagaagagcagga
tcatcatgttgggtaagcctatctgatagatgcccttggaatctgatgca
gatctagagagagtctaatgagaagcatcgaagcgattgaacatgctcag
tttctcagcccctgatatcacttgtcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_9801695_9802852
seq2: B6Ng01-033D05.b_45_1184 (reverse)

seq1  GCTGATCACCGGCAAAGCCTGGGATTTGCTGGAGGAGAAAAAAAAAAAAA  50
      ||||||| |||||||   |||||| ||||||||||   ||||||||||||
seq2  GCTGATC-CCGGCAA--GCTGGGA-TTGCTGGAGG---AAAAAAAAAAAA  43

seq1  TGAGTGCAATCTAAAAG-CGCTCCTCCAGTATCTGTTTTGACAGCCAAAA  99
      || |||| |||| |||| |||||||| ||| |||| ||||||||||||||
seq2  TG-GTGC-ATCTTAAAGCCGCTCCTCAAGTTTCTGGTTTGACAGCCAAAA  91

seq1  TTAATAGTGCACTTTCGGAGTGCTTTTTGGCAACTCTTTCTAATGACCCG  149
      || ||||||||| ||||||||||  |||||||||||||||||||||||||
seq2  TT-ATAGTGCACCTTCGGAGTGC--TTTGGCAACTCTTTCTAATGACCCG  138

seq1  AACTGTCGCCTCCTTCCACCGCGGCTTGGCAGGGCTCTGGACCTGGGGCT  199
      |||||||| |||  | ||||||||||||||| |||||| ||||| |||||
seq2  AACTGTCG-CTC--TTCACCGCGGCTTGGCA-GGCTCT-GACCT-GGGCT  182

seq1  GACAGCCGGTGGGCGGGAAGGGATCACGGCGGCCACCGCATTGGCTGCGT  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACAGCCGGTGGGCGGGAAGGGATCACGGCGGCC-CCGCATTGGCTGCGT  231

seq1  CCAGCGGGAGAGGGCGCGACTGCTCCCCACACGCAGTGACAGTGAAGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGGGAGAGGGCGCGACTGCTCCCCACACGCAGTGACAGTGAAGAGG  281

seq1  ATGGGTACACTCGGGCTAGGAAACGCACAAAGCAGATTACAGTAAAGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTACACTCGGGCTAGGAAACGCACAAAGCAGATTACAGTAAAGGTG  331

seq1  ATAATTGGCTTGAAGGGGGGCTGTGCATGCCTTAGTCTTCCAAAGCCGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGCTTGAAGGGGGGCTGTGCATGCCTTAGTCTTCCAAAGCCGGT  381

seq1  GGATCTGCTTGCTTACCCTGTTGCTCCTTGTCAAGGAGGAGACTTGAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGCTTGCTTACCCTGTTGCTCCTTGTCAAGGAGGAGACTTGAGCC  431

seq1  TGTACCTCCGCGCGCTCTCAGGGTTGGCCAGAAGAGGGAGCAGGTTCGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTCCGCGCGCTCTCAGGGTTGGCCAGAAGAGGGAGCAGGTTCGGT  481

seq1  GGGGAGAAGGAGTTCTTACCAGAGGCTGAGAATGGCACCCAACTCCCAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGGAGTTCTTACCAGAGGCTGAGAATGGCACCCAACTCCCAAT  531

seq1  CTGCTGACTCTGAGGACTAACAGTTGTTGAAACTAAAAACTATGAGAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTCTGAGGACTAACAGTTGTTGAAACTAAAAACTATGAGAGAA  581

seq1  AACAGAAAATACTGATTTTTGGGTTTGGCAAGCTCTAAAACCATTAAACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAATACTGATTTTTGGGTTTGGCAAGCTCTAAAACCATTAAACG  631

seq1  ATGTAGAAAGAAGTTTTAACTACGTGTACATTAATTACTCGAAAGTTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAAGAAGTTTTAACTACGTGTACATTAATTACTCGAAAGTTCCT  681

seq1  AGCACTCTGATACTATTGTCAAAATACAGTCCCTAACAGGATCCTGCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTGATACTATTGTCAAAATACAGTCCCTAACAGGATCCTGCTCA  731

seq1  CGCAGCCAGGAACTTTCACCTCTCTGTGATGTCTTCTCAGCTCCTGCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCCAGGAACTTTCACCTCTCTGTGATGTCTTCTCAGCTCCTGCCAT  781

seq1  GGTTTGTATGAGCTCCATAAACACTCTACATGTAATGACTTGGTCCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTATGAGCTCCATAAACACTCTACATGTAATGACTTGGTCCCAAA  831

seq1  AACCGGGGAGATTGGGTACAGACCTTGAAAAGGTGGACCCTAGTGGGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGGGAGATTGGGTACAGACCTTGAAAAGGTGGACCCTAGTGGGTGT  881

seq1  TCTGTTGGTTTGGGAGGTATGTGCTCAAAAGAGATTGTGGGATTGCTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGTTTGGGAGGTATGTGCTCAAAAGAGATTGTGGGATTGCTGTC  931

seq1  CCTTTCTATCAGTCCCTGACTCGAACAGAAAACCTTTTTCTTAGCCACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTATCAGTCCCTGACTCGAACAGAAAACCTTTTTCTTAGCCACAC  981

seq1  ACAGAGACTAGGATGTGTCACTGCCTTCAGAGGCACAGATTGCAGAGATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTAGGATGTGTCACTGCCTTCAGAGGCACAGATTGCAGAGATC  1031

seq1  TCTTGACACCATGAACCTCTGAAATTGTGAGCCTTCTTTCTCAAAAGAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACACCATGAACCTCTGAAATTGTGAGCCTTCTTTCTCAAAAGAAG  1081

seq1  AGTTACCTGTAGTCATGCAGATGCTGGAATTTGAAAATACAGAGGTGTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTGTAGTCATGCAGATGCTGGAATTTGAAAATACAGAGGTGTGA  1131

seq1  AGTGAATTC  1158
      |||||||||
seq2  AGTGAATTC  1140


seq1: chr4_9722783_9723825
seq2: B6Ng01-033D05.g_68_1096

seq1  GAATTCAAAGGAAACCGATTGGCTCTCCCACAAGCAGGATGGAAGATGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAAACCGATTGGCTCTCCCACAAGCAGGATGGAAGATGCG  50

seq1  TCACTTTGCGTCAGCAGCATCGCTGAAGGTGTCACTGGCACCATTCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGCGTCAGCAGCATCGCTGAAGGTGTCACTGGCACCATTCAAGT  100

seq1  CCGATGATCAACTTTCACTTTTGGCTGGAAGGGCTTTGTTATTAGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGATCAACTTTCACTTTTGGCTGGAAGGGCTTTGTTATTAGAGTTT  150

seq1  GTTTAAACTAGAATCCTTAGAGTCTCTTTTCGAATAGCACCATCAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACTAGAATCCTTAGAGTCTCTTTTCGAATAGCACCATCAGCATC  200

seq1  TTTCTTAGCAGCAAAGAGCTCTTTCCCTCCCCCTTGTCTGCCCTTAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCAGCAAAGAGCTCTTTCCCTCCCCCTTGTCTGCCCTTAACAA  250

seq1  ACCAGACCATGTCTATTGGCTGATATGGACTTCCACACAATAGCGTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACCATGTCTATTGGCTGATATGGACTTCCACACAATAGCGTTGTC  300

seq1  AGACTTTTTGAAGTCTTGGTAACTGTAACCCCCCAAATGAGAACTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTTGAAGTCTTGGTAACTGTAACCCCCCAAATGAGAACTCTGAT  350

seq1  GAGAGAAAAGCTTCAAAGATGGCAACTGCTAATAAGGCACAAAGTACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAGCTTCAAAGATGGCAACTGCTAATAAGGCACAAAGTACAGC  400

seq1  TCTTTTCTCACATCAGCAAATGATAATAAGGCACAACCTGCCCCCCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCACATCAGCAAATGATAATAAGGCACAACCTGCCCCCCCCCC  450

seq1  CCAACCAACTAACCAACCAACCAAAGAAAACCTGAATGAAATGCAGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAACTAACCAACCAACCAAAGAAAACCTGAATGAAATGCAGGTTA  500

seq1  AGAACTGTAATGAAATTCATTTTAAGCCATCAGATTTCAAGGTAGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTAATGAAATTCATTTTAAGCCATCAGATTTCAAGGTAGAAATA  550

seq1  AAGATGAACCCAGGATGATGAAGCAAAAAAGGAGAAGCTATGTAGGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAACCCAGGATGATGAAGCAAAAAAGGAGAAGCTATGTAGGACTT  600

seq1  TGGAGTTGTAAATATCACTAGGCAGTGGCCAGAGAGTCTTTAGTTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTGTAAATATCACTAGGCAGTGGCCAGAGAGTCTTTAGTTGGAAA  650

seq1  AGAAAGGATGGGTCAGAATAGCGGGTAAGGTGCATGTTGGGTGTGTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATGGGTCAGAATAGCGGGTAAGGTGCATGTTGGGTGTGTTGAG  700

seq1  TTTCTATGGCTTCATGCTGTCCCTAGCTACCAGAAACATCAGGAAGACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGGCTTCATGCTGTCCCTAGCTACCAGAAACATCAGGAAGACGT  750

seq1  ATGGCAAGGTTTCTTATGCAAGTATGCATTGAAACACTTACTACCCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGGTTTCTTATGCAAGTATGCATTGAAACACTTACTACCCAACA  800

seq1  CATGTTTGAGAAGCAGATGAACCAATGAATGAATGGTTCCCTCCGGAGAT  850
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  CATGTTTGAGAAGCAGATGAACCAATGAATGATTGGTTCCTTCCGGAGAT  850

seq1  GCCCTCCACAAAGGTAGGAAGGTAATCTGATGTCTCAGAGAAGAGCAAGA  900
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCCTCCACAAAGGTAGGAAGGTAATCTGATGTCTCAGAGAAGAGCAGGA  900

seq1  TCATCAGGTTGGGTAAGCTTA-CTGAGAGATGGCCCTTGGAATCCTGATG  949
      |||||| ||||||||||| || |||| |||| ||||||||||| ||||||
seq2  TCATCATGTTGGGTAAGCCTATCTGATAGAT-GCCCTTGGAAT-CTGATG  948

seq1  GCAAGTACTTAAGAGAGAGTCTAAATGAGAAGCACAGAAAGCAGATATGA  999
         ||  ||  ||||||||||| |||||||||||  | |||| ||| || 
seq2  --CAGATCT--AGAGAGAGTCT-AATGAGAAGCATCG-AAGC-GAT-TG-  989

seq1  AACATTGCTCAAGTTTCTCAGCCCCTGGTTATCCACTTGTCTTC  1043
      |||| ||||| ||||||||||||||| | ||| |||||||||||
seq2  AACA-TGCTC-AGTTTCTCAGCCCCT-GATAT-CACTTGTCTTC  1029


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