BAC Information

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BAC

Clone NameB6Ng01-034C08
Chromosome4 (Build37)
Map Location 110,967,785 - 111,105,327
singlet/doubletdoublet
Overlap gene2310026E23Rik
Upstream geneLOC100040381
Downstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034C08.bB6Ng01-034C08.g
ACCDH862990DH862991
length1,0401,082
definitionDH862990|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C08, 5' end.DH862991|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,967,785 - 110,968,843)(111,104,236 - 111,105,327)
sequence
gaattcaatcaaaagcactacctgctgcattttcaggaaaggaagaagaa
aaagaaatggtggggtattattagattcctctagccacagtgcagagata
gagtgccctaaaatccttccatgcttaggtgacagtgcaacctcagcggt
ccaggtaaccctgctgcatcagaggaaattaactcttagccaatgagatg
ctaccaacttccaggttctgtgtagatatatggtttggagaggaaagacc
aaattgctaaagcatgagtcctgttaaagacagtgtcttgacattattcc
tctcagtaaatctttcttttatacttgaaatctctttattactaaagcaa
attcttattatttgttttataaagtttatacatatagaaaatcaaaggta
aaatttactcataatcccactctccagaaataatgttaatattttcatgt
ttatttatctattactctaatgagtcacttaccctcataatcacaaaata
agtgattctttgtagccaatcttttataatgtacactgttatcatgcagt
attcatctctaacacagtgtggtggttttttgtactttgttccattaatc
tgcctgatacattcagatgagtcttaagcattaggtttccatgtaggatc
ctgaagtttttatggtaacacagaaggacagcataggaacctcccccttg
gaatcaaatagatgtgaattccaactaaacttcaccttagctgtgtgttc
ttgggaaaattaattaatcctttcatacaggcttttgtcttaaaaagaaa
taaagcttgttttgaagactgattgagaatctataaaaggcctagtacaa
gtgtcttatataaagtaaaatgttcagttgtgttacactaatactgccat
tgatagaattgctttgtaatttcttacagctaattcttatcacttcatag
gctaatctcccaaccgtgggattactgggtcaaggggttcacttttgaat
caactaaaaggctcaaaactcctcagattcttttcagaac
gaattctattttgtaacccttttaagactgcttcagtttggaaggacgtt
aaaatccaaacccactctaatcttgggcagtacatatgtcttgttttctc
tggttctctactgcctacacactcaggactggcagttggcagaagcctga
caaatgtttactcaactgcaagcttcaaagaatgctagctagcactgggg
tgctttcagttttcttcacattgcaggtaaacaagcagagccctagagaa
gggaggaaccgctcccagggtcccacgcatggggaattacatgccacgca
gtgaaaagcagaattgaagaccacgtgcaagccagagctcctgctcccac
acctgccacatctccctcagccagacagcacagagaaaggaaggttcacc
caggagacaaccatccacgactacccaagggctgggggctcagctgtctg
aggcaatttcagctcgagtgtacaaagctcccaatgaggatggcagagct
gctgaagtggctgaatcttgacctagggttgaagggtcacgagctctccc
agaggcaccatacagataaccgtagtacacaaaattctgtacaatttaac
cagccaggtctgactcaaccttccaggttcagaaaattgaaggtaacaaa
aatgaggtaaactcatgacttcagattgagtaacactgaagtcctggtat
ctgctaaaacgtaatgatcatcttcaccatctgttcacattactacactg
tgagaaccctgggaataggggataggtgtggctatgctccatgactccag
gggccagcactgggccagagccacaccaggggatggatgccatgcagtgg
attgaccccgtcatttggactacaccttggtggatgtccttgacctgtgt
cccaatgagagtgcaaagcaaagtgcctttctctcttcctctccctttcc
ctgggaatactcagagagtgagataagtgcgtgtagagagctaaaccgct
gatcataattccagcagattttgatcgtgttgttctatagtgagagccga
gctggagcctctacaaggaaatgggaaacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_110967785_110968843
seq2: B6Ng01-034C08.b_46_1085

seq1  GAATTCAATCAAAAGCACTACCTGCTGCATTTTCAGGAAAGGAAGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAAAAGCACTACCTGCTGCATTTTCAGGAAAGGAAGAAGAA  50

seq1  AAAGAAATGGTGGGGTATTATTAGATTCCTCTAGCCACAGTGCAGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGGTGGGGTATTATTAGATTCCTCTAGCCACAGTGCAGAGATA  100

seq1  GAGTGCCCTAAAATCCTTCCATGCTTAGGTGACAGTGCAACCTCAGCGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCCTAAAATCCTTCCATGCTTAGGTGACAGTGCAACCTCAGCGGT  150

seq1  CCAGGTAACCCTGCTGCATCAGAGGAAATTAACTCTTAGCCAATGAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAACCCTGCTGCATCAGAGGAAATTAACTCTTAGCCAATGAGATG  200

seq1  CTACCAACTTCCAGGTTCTGTGTAGATATATGGTTTGGAGAGGAAAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACTTCCAGGTTCTGTGTAGATATATGGTTTGGAGAGGAAAGACC  250

seq1  AAATTGCTAAAGCATGAGTCCTGTTAAAGACAGTGTCTTGACATTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTAAAGCATGAGTCCTGTTAAAGACAGTGTCTTGACATTATTCC  300

seq1  TCTCAGTAAATCTTTCTTTTATACTTGAAATCTCTTTATTACTAAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAAATCTTTCTTTTATACTTGAAATCTCTTTATTACTAAAGCAA  350

seq1  ATTCTTATTATTTGTTTTATAAAGTTTATACATATAGAAAATCAAAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATTATTTGTTTTATAAAGTTTATACATATAGAAAATCAAAGGTA  400

seq1  AAATTTACTCATAATCCCACTCTCCAGAAATAATGTTAATATTTTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTCATAATCCCACTCTCCAGAAATAATGTTAATATTTTCATGT  450

seq1  TTATTTATCTATTACTCTAATGAGTCACTTACCCTCATAATCACAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATCTATTACTCTAATGAGTCACTTACCCTCATAATCACAAAATA  500

seq1  AGTGATTCTTTGTAGCCAATCTTTTATAATGTACACTGTTATCATGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCTTTGTAGCCAATCTTTTATAATGTACACTGTTATCATGCAGT  550

seq1  ATTCATCTCTAACACAGTGTGGTGGTTTTTTGTACTTTGTTCCATTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTCTAACACAGTGTGGTGGTTTTTTGTACTTTGTTCCATTAATC  600

seq1  TGCCTGATACATTCAGATGAGTCTTAAGCATTAGGTTTCCATGTAGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATACATTCAGATGAGTCTTAAGCATTAGGTTTCCATGTAGGATC  650

seq1  CTGAAG-TTTTATGGTAACACAGAAGGACAGCATAGGAACCT-CCCCTTG  698
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGAAGTTTTTATGGTAACACAGAAGGACAGCATAGGAACCTCCCCCTTG  700

seq1  GAATCAAATAGATGTGAATTCCAACTAAACTTCAACCTTAGCTGTGTGTT  748
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATCAAATAGATGTGAATTCCAACTAAACTTC-ACCTTAGCTGTGTGTT  749

seq1  CTTGGGAAAATTAATTAATCCTTCCAATACAGGCTTTTGTCTTAAAAAAG  798
      ||||||||||||||||||||||| | ||||||||||||||||| ||||||
seq2  CTTGGGAAAATTAATTAATCCTTTC-ATACAGGCTTTTGTCTT-AAAAAG  797

seq1  AAATAAGGCTTGTTTTGAAGACTGATTGAGAATCTATAAAAGGACCTAGT  848
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  AAATAAAGCTTGTTTTGAAGACTGATTGAGAATCTATAAAAGG-CCTAGT  846

seq1  ACAAGTGTCTTATATAAAGTAAAATGTTCAGTTTGTGGTAACCACTAATA  898
      ||||||||||||||||||||||||||||||| ||||| ||  ||||||||
seq2  ACAAGTGTCTTATATAAAGTAAAATGTTCAG-TTGTGTTA--CACTAATA  893

seq1  CTGCCATTGATAGTAATGCTTTGATAAATTTTCTTACAGCTAAATCTTAA  948
      ||||||||||||| | ||||||| |||  |||||||||||||| |||| |
seq2  CTGCCATTGATAGAATTGCTTTG-TAA--TTTCTTACAGCTAATTCTT-A  939

seq1  TCACTTCATTAGGCTAATCTCCCAACTGTGGAATTACTGGGTCAAAGGGG  998
      |||||||| ||||||||||||||||| |||| ||||||||||| ||||||
seq2  TCACTTCA-TAGGCTAATCTCCCAACCGTGGGATTACTGGGTC-AAGGGG  987

seq1  TTTCACATTTTGGAATCAACTAAAATGCTCTAAAACTCCTCAAGTATTTC  1048
      ||   || ||| ||||||||||||| |||| |||||||||||     |||
seq2  TT---CACTTTTGAATCAACTAAAAGGCTC-AAAACTCCTCA---GATTC  1030

seq1  TTTCTCAGAAC  1059
      ||| |||||||
seq2  TTT-TCAGAAC  1040

seq1: chr4_111104236_111105327
seq2: B6Ng01-034C08.g_67_1148 (reverse)

seq1  GAGGTT--GCATTTCCTTGTTATGTGCTCCAGCTGGGCTCTCACTATATG  48
      ||||||   |||||||||| ||   ||||||||| |||||||||||||  
seq2  GAGGTTTCCCATTTCCTTG-TAGAGGCTCCAGCTCGGCTCTCACTATAGA  49

seq1  AAAACAAACAAACAAACAAAAAACTGCTGGAAATATTGATCAGCGGTCTA  98
      | |||      || | | |||| ||||||||| || ||||||||||| ||
seq2  ACAAC------ACGATC-AAAATCTGCTGGAATTA-TGATCAGCGGTTTA  91

seq1  GCTCTCTACACGCACTTATCTCACTCTCTGAGTA-TCCCAGGGAAAGGGA  147
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTCTCTACACGCACTTATCTCACTCTCTGAGTATTCCCAGGGAAAGGGA  141

seq1  GAAGGAAGAGAAGAAAGGCACCTTCTGCTTTGCACTCTCATTGGGACACA  197
      | |||||||| ||||||||||  | |||||||||||||||||||||||||
seq2  G-AGGAAGAG-AGAAAGGCAC--TTTGCTTTGCACTCTCATTGGGACACA  187

seq1  GGTCAAGGACATCCACCAAGGTGTAGTCCAAATGACGGGGTCAATCCACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGACATCCACCAAGGTGTAGTCCAAATGACGGGGTCAATCCACT  237

seq1  GCATGGCATCCATCCCCTGGTGTGGCTCTGGCCCAGTGCTGGCCCCTGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCATCCATCCCCTGGTGTGGCTCTGGCCCAGTGCTGGCCCCTGGA  287

seq1  GTCATGGAGCATAGCCACACCTATCCCCTATTCCCAGGGTTCTCACAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGAGCATAGCCACACCTATCCCCTATTCCCAGGGTTCTCACAGTG  337

seq1  TAGTAATGTGAACAGATGGTGAAGATGATCATTACGTTTTAGCAGATACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGTGAACAGATGGTGAAGATGATCATTACGTTTTAGCAGATACC  387

seq1  AGGACTTCAGTGTTACTCAATCTGAAGTCATGAGTTTACCTCATTTTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCAGTGTTACTCAATCTGAAGTCATGAGTTTACCTCATTTTTGT  437

seq1  TACCTTCAATTTTCTGAACCTGGAAGGTTGAGTCAGACCTGGCTGGTTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAATTTTCTGAACCTGGAAGGTTGAGTCAGACCTGGCTGGTTAA  487

seq1  ATTGTACAGAATTTTGTGTACTACGGTTATCTGTATGGTGCCTCTGGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAGAATTTTGTGTACTACGGTTATCTGTATGGTGCCTCTGGGAG  537

seq1  AGCTCGTGACCCTTCAACCCTAGGTCAAGATTCAGCCACTTCAGCAGCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTGACCCTTCAACCCTAGGTCAAGATTCAGCCACTTCAGCAGCTC  587

seq1  TGCCATCCTCATTGGGAGCTTTGTACACTCGAGCTGAAATTGCCTCAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCTCATTGGGAGCTTTGTACACTCGAGCTGAAATTGCCTCAGAC  637

seq1  AGCTGAGCCCCCAGCCCTTGGGTAGTCGTGGATGGTTGTCTCCTGGGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGCCCCCAGCCCTTGGGTAGTCGTGGATGGTTGTCTCCTGGGTGA  687

seq1  ACCTTCCTTTCTCTGTGCTGTCTGGCTGAGGGAGATGTGGCAGGTGTGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTTTCTCTGTGCTGTCTGGCTGAGGGAGATGTGGCAGGTGTGGG  737

seq1  AGCAGGAGCTCTGGCTTGCACGTGGTCTTCAATTCTGCTTTTCACTGCGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGCTCTGGCTTGCACGTGGTCTTCAATTCTGCTTTTCACTGCGT  787

seq1  GGCATGTAATTCCCCATGCGTGGGACCCTGGGAGCGGTTCCTCCCTTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTAATTCCCCATGCGTGGGACCCTGGGAGCGGTTCCTCCCTTCTC  837

seq1  TAGGGCTCTGCTTGTTTACCTGCAATGTGAAGAAAACTGAAAGCACCCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTCTGCTTGTTTACCTGCAATGTGAAGAAAACTGAAAGCACCCCA  887

seq1  GTGCTAGCTAGCATTCTTTGAAGCTTGCAGTTGAGTAAACATTTGTCAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGCTAGCATTCTTTGAAGCTTGCAGTTGAGTAAACATTTGTCAGG  937

seq1  CTTCTGCCAACTGCCAGTCCTGAGTGTGTAGGCAGTAGAGAACCAGAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCAACTGCCAGTCCTGAGTGTGTAGGCAGTAGAGAACCAGAGAA  987

seq1  AACAAGACATATGTACTGCCCAAGATTAGAGTGGGTTTGGATTTTAACGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACATATGTACTGCCCAAGATTAGAGTGGGTTTGGATTTTAACGT  1037

seq1  CCTTCCAAACTGAAGCAGTCTTAAAAGGGTTACAAGATAGAATTC  1092
      ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTCCAAACTGAAGCAGTCTTAAAAGGGTTACAAAATAGAATTC  1082