BAC Information

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BAC

Clone NameB6Ng01-034D24
Chromosome17 (Build37)4 (Build37)
Map Location 52,911,998 - 52,912,444128,147,547 - 128,148,041
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034D24.bB6Ng01-034D24.g
ACCDH863058DH863059
length328490
definitionDH863058|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D24, 5' end.DH863059|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,911,998 - 52,912,444)(128,147,547 - 128,148,041)
sequence
aaggcctaggatagagaagactttctctttaaaatggaataaaattttat
atctatatctatataaatataaatatatcttgcaacatattatatacatt
tatatataaaaatatatcctgcagaatatattatctatatctgtgtgtat
atacataaataaatgtacatataaatatatcatatatacatatatatcat
atgtgtatatatatatatatgtgtgtgtatatatatatatgtatatacac
acatatatatatacacatatatgtaggtgttatatatgatatatatatat
acatatatatatatgtatatacacacag
cagagagagagagagagaggaagaaaaccacaaggaaaagagtttgagaa
gaaagatggcttgccgcgctgtggctcaggctgtggaggcttgccaagca
ccagatatgatgagaaaaaagagcttggctttgagggctgcttaattttc
taaataagaaaacatgagagtcccatggacagcgaagcattggagattca
cgaggctgagggctcagcttggatcccggtttgtctgtaataggaaatac
tggaataaggcagagcaatttgctcgggtttttttttttcttcaagacct
ctaatttgatttgcaagaaagttggtgttcccatgccatgccaggggaag
gcatttgtgaatctgcaaggtgacgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgcgcggagccgcagtggaggaaataactgaaagggagaagccag
gaactagcaaagaggaactgctagggaatgggctggccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52911998_52912444
seq2: B6Ng01-034D24.b_226_362 (reverse)

seq1  TATATATATGTATATATATCACCAGACACACACACACACAATATATATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATATATATATATATATATATATATATATATATATATATATATGCATAATA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATATATAGTGTGATATACACACACATATATATAGTGTGTGTGTGTGTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATATGTGTGTGTGTGTGTTGTGTTCTAACCGGTTCTCAGAAAGTCACAGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTGCATCTCAGGTTCATAGCTGACTAGATATTCACCTTCCATCTGTGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAAATTGCAGGCATTATTTGTCTGGCTCCAAAGAAACCTCTAGCTGTGTG  300
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGGTAAATATATATATTTATATATACATAT-ATATTTATACATGTAT  349
                ||||||||| |||||||| |||| |||| || |||  || 
seq2  ----------TATATATATGTATATATATATATCATATATA-ACACCTAC  39

seq1  ATACATATATACATACATATATTTATATATATATATATAGAGACACACAC  399
      ||| || | || ||| |||| | | |||||| ||||||| | | ||||||
seq2  ATATATGTGTATATATATATGTGTGTATATACATATATATATATACACAC  89

seq1  ACACACACACATATATATATATAT-ATATATATATATATAT-ATATATAT  447
      ||| | | | ||||||| | |||| |||||||| ||||||| ||||||  
seq2  ACATATATATATATATACACATATGATATATATGTATATATGATATAT--  137

seq1: chr4_128147547_128148041
seq2: B6Ng01-034D24.g_70_565 (reverse)

seq1  TCGGCCAG-CCATTCCCTAGCAGTTCCTCTTTGCTAGCTCCTGGCTTCTC  49
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  TCGGCCAGCCCATTCCCTAGCAGTTCCTCTTTGCTAGTTCCTGGCTTCTC  50

seq1  CCTTTCAGTTCTTTCCTTCACTGAGGCTCAGCGCACACACACACACACAC  99
      |||||||||| |||||| ||||| ||||| ||||||||||||||||||||
seq2  CCTTTCAGTTATTTCCTCCACTGCGGCTCCGCGCACACACACACACACAC  100

seq1  ACACACACACACACACGTCACCTTGCAGATTCACAAATGCCTTCCCCTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACGTCACCTTGCAGATTCACAAATGCCTTCCCCTGG  150

seq1  CATGGCATGGGAACACCAACTTTCTTGCAAATCAAATTAGAGGTCTTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATGGGAACACCAACTTTCTTGCAAATCAAATTAGAGGTCTTGAA  200

seq1  GAAAAAAAAAAACCCGAGCAAATTGCTCTGCCTTATTCCAGTATTTCCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAACCCGAGCAAATTGCTCTGCCTTATTCCAGTATTTCCTA  250

seq1  TTACAGACAAACCGGGATCCAAGCTGAGCCCTCAGCCTCGTGAATCTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACAAACCGGGATCCAAGCTGAGCCCTCAGCCTCGTGAATCTCCA  300

seq1  ATGCTTCGCTGTCCATGGGACTCTCATGTTTTCTTATTTAGAAAATTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCGCTGTCCATGGGACTCTCATGTTTTCTTATTTAGAAAATTAAG  350

seq1  CAGCCCTCAAAGCCAAGCTCTTTTTTCTCATCATATCTGGTGCTTGGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCAAAGCCAAGCTCTTTTTTCTCATCATATCTGGTGCTTGGCAA  400

seq1  GCCTCCACAGCCTGAGCCACAGCGCGGCAAGCCATCTTTCTTCTCAAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACAGCCTGAGCCACAGCGCGGCAAGCCATCTTTCTTCTCAAACT  450

seq1  CTTTTCCTTGTGGTTTTCTTCCTCTCTCTCTCTCTCTCTGGAATTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTGTGGTTTTCTTCCTCTCTCTCTCTCTCTCTGGAATTC  496