BAC Information

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BAC

Clone NameB6Ng01-034M08
Chromosome4 (Build37)
Map Location 12,994,225 - 12,995,324
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592, OTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034M08.bB6Ng01-034M08.g
ACCDH863427DH863428
length1,0661,240
definitionDH863427|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M08, 5' end.DH863428|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctgtttgtttatttatttgtttgtttatgagctagcctgaca
aacagatcaatggatagatataagatagatagatagatagatagatagat
agatagatagatagataatagccagccagccagccagacatattatgtct
agtctttgaatgcattaatgttggatattgtccttggtaaatacagtcat
gggccacctcatgacaagaatatgttctgaggaaaacagtgccaggagac
ttccctttggaaatacaatagagtgcccttacacacactaagatacactc
ttaggagaccacttatatccatggtacataatggatcaaataacagattc
tgtggcatgtgatggcagtttccttctttgaactacttagactagagtaa
gttctacaagcctttgcctgatataaacatgataggagcattaaaaatag
aaatatgaaggggagagagactggtatgctttgtactgacacataaatac
tgacacataaaacatacttattttcctagcacatgggtaggaagacagaa
ttgggaatatgagacaattataataaaaacacaagtaagagacagactag
catgtctgttgcattaattaagagtaactaaatcttgagtatgaagttta
ctaaagtggttttctctcaattccctgctttcaaggactgctaagcttgg
taaaaatcaccaaagctacagctttttgttttgtgtacctgccttgcagt
gctctgagatgggcaagaccagaatggagagtggaaagcaatgcccaaga
atctccaacagaatactgaagatgcgatgtcatatgatctggcaagtagt
acatccttcaaacatgtatcagaaaccaggcaagagaacactgcaaccta
catgtgctgcaagatgctgtgtatgctcgtgcccatgcctgccaggttac
tgtagatttagtgacggaacgggtcttatcttcttggagtttatggcagt
ctttaggatcattgaatacattaggtatcagaatgtacctgtcaagctga
tgaagacaggatcttg
gaattcaataactcacttaaagagatacaggagaacactactaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaagtgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaaccaaagtgaggcaac
gctggagatagaaaccctaggaaagaaatctggaaccatagatgccagca
tcagcaacagaatacaagagatggaagagagaatctcaggtgcagaagac
tccatagagaacatcggcacaacaatcaaagataatggaaaacacaaaaa
gatcccaactaaaaacatccaggaaatccaggacacaatgagaagaccaa
acctacagataataggagtggatgagaatgaagattttcaactcaaagga
ccagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaaa
gaaagagatgcccatgaacatacaagaagcctacaaaactccaaatagac
tggaccagaaaagaaagtcctcccgacacataataatcagaacatcaaat
gcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaagt
aacatataaaggcaagcctatcagaattacaccagatttttcaccagaga
ctatgaaagccagaagagcctggacagatgttatacagacactaagagaa
cacaaatgccagcccaggctactatacccagccaaactctcaattaccat
agatggagaaaccaaaagtatttcacgacaaaactaaattcacccattat
ctctccacgaatccagcccttcaaaggatataacagaaaaaaacaataca
aggacgggaaccacgccctagaaaaacaagaagatatccctcaacaaact
tagaagaagacagcacagacagatgcaactttacaacaataataacaggg
agcaacattacttcttaatattctcttattatcaatggactcaattccca
ttaaaaagacatgaactacaggactggctaccaaactgaaccaacatctt
gcttgcttacagggaaccatctcaagtaaaaagacagaactcacctcaga
ggtaaagggctgaaaaaatattcaagacacgtgactgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12994225_12995324
seq2: B6Ng01-034M08.b_48_1113 (reverse)

seq1  CAAGATCCTTGTCATCATCAGGCTTTGAACAGGTACATTTCTGATACTTT  50
      |||||||| |||| |||||| ||||   ||||||||| ||||||||| | 
seq2  CAAGATCC-TGTCTTCATCA-GCTT--GACAGGTACA-TTCTGATACCT-  44

seq1  AAATGATATTTTAAATGATACTTTAAGGAACTGCCATAATCATCCAAGAA  100
       ||||   | || |||||| |  ||| | |||||||||| | ||||||||
seq2  -AATG---TATTCAATGATCC--TAAAG-ACTGCCATAAAC-TCCAAGAA  86

seq1  AGGATAAAGGACCCGTTCCCTGTCACTAAATCTACAGTAACCTGGGCAAG  150
        |||||  ||||||||||  ||||||||||||||||||||||||   ||
seq2  --GATAA--GACCCGTTCC--GTCACTAAATCTACAGTAACCTGG--CAG  128

seq1  GCATGGGCACGAGCATAACACAGCAATCTTTGCAGCACATTGTAGTGTGC  200
      |||||||||||||||| ||||||| ||| |||||||||| |||||  |||
seq2  GCATGGGCACGAGCAT-ACACAGC-ATC-TTGCAGCACA-TGTAGGTTGC  174

seq1  AGTGTTCTCTTTTGCCTGGTTTTCTGATACATTGTTTTGAAGAATGTACT  250
      |||||||||  |||||||| ||||||||||||   ||||||| |||||||
seq2  AGTGTTCTC--TTGCCTGG-TTTCTGATACAT--GTTTGAAGGATGTACT  219

seq1  ACTTTGCCAGATCATATGGACATCGCATCTTCAGTATTCTGTTTGGAGAT  300
      || |||||||||||||| ||||||||||||||||||||||| ||||||| 
seq2  AC-TTGCCAGATCATAT-GACATCGCATCTTCAGTATTCTG-TTGGAGA-  265

seq1  TTCTTTGGCATTGCTGTCCACTTCTCCATTCTGGTCTTGCCCATCTCAGA  350
      ||||| ||||||||| ||||| ||||||||||||||||||||||||||||
seq2  TTCTTGGGCATTGCTTTCCAC-TCTCCATTCTGGTCTTGCCCATCTCAGA  314

seq1  GCACTGCAAGGCAGGTACACAAAACAAAAAGCTGTAGCTTTGGTGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCACTGCAAGGCAGGTACACAAAACAAAAAGCTGTAGCTTTGGTG-ATTT  363

seq1  TTACCAAGCTTAGCAGTCCTTGAAAGCAGGGAATTGAGAGAAAACCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGCTTAGCAGTCCTTGAAAGCAGGGAATTGAGAGAAAACCACTT  413

seq1  TAGTAAACTTCATACTCAAGATTTAGTTACTCTTAATTAATGCAACAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACTTCATACTCAAGATTTAGTTACTCTTAATTAATGCAACAGAC  463

seq1  ATGCTAGTCTGTCTCTTACTTGTGTTTTTTATTATAATTGTCTCATATTC  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGCTAGTCTGTCTCTTACTTGTG-TTTTTATTATAATTGTCTCATATTC  512

seq1  CCAATTCTGTCTTCCTACCCATGTGCTAGGAAAATAAGTATGTTTTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTGTCTTCCTACCCATGTGCTAGGAAAATAAGTATGTTTTATGT  562

seq1  GTCAGTATTTATGTGTCAGTACAAAGCATACCAGTCTCTCTCCCCTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATTTATGTGTCAGTACAAAGCATACCAGTCTCTCTCCCCTTCAT  612

seq1  ATTTCTATTTTTAATGCTCCTATCATGTTTATATCAGGCAAAGGCTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTTTTAATGCTCCTATCATGTTTATATCAGGCAAAGGCTTGTA  662

seq1  GAACTTACTCTAGTCTAAGTAGTTCAAAGAAGGAAACTGCCATCACATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTACTCTAGTCTAAGTAGTTCAAAGAAGGAAACTGCCATCACATGC  712

seq1  CACAGAATCTGTTATTTGATCCATTATGTACCATGGATATAAGTGGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATCTGTTATTTGATCCATTATGTACCATGGATATAAGTGGTCTC  762

seq1  CTAAGAGTGTATCTTAGTGTGTGTAAGGGCACTCTATTGTATTTCCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTGTATCTTAGTGTGTGTAAGGGCACTCTATTGTATTTCCAAAG  812

seq1  GGAAGTCTCCTGGCACTGTTTTCCTCAGAACATATTCTTGTCATGAGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTCCTGGCACTGTTTTCCTCAGAACATATTCTTGTCATGAGGTG  862

seq1  GCCCATGACTGTATTTACCAAGGACAATATCCAACATTAATGCATTCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGACTGTATTTACCAAGGACAATATCCAACATTAATGCATTCAAA  912

seq1  GACTAGACATAATATGTCTGGCTGGCTGGCTGGCTAT----TATCTATCT  996
      |||||||||||||||||||||||||||||||||||||    |||||||||
seq2  GACTAGACATAATATGTCTGGCTGGCTGGCTGGCTATTATCTATCTATCT  962

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTTATATCTATCCATTGATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTTATATCTATCCATTGATC  1012

seq1  TGTTTGTCAGGCTAGCTCATAAACAAACAAATAAATAAACAAACAGAAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCAGGCTAGCTCATAAACAAACAAATAAATAAACAAACAGAAGA  1062

seq1  ATTC  1100
      ||||
seq2  ATTC  1066