BAC Information

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BAC

Clone NameB6Ng01-035N05
Chromosome4 (Build37)
Map Location 103,586,234 - 103,726,876
singlet/doubletdoublet
Overlap geneLOC622315
Upstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460
Downstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035N05.bB6Ng01-035N05.g
ACCDH864189DH864190
length1,004288
definitionDH864189|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N05, 5' end.DH864190|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,586,234 - 103,587,263)(103,726,589 - 103,726,876)
sequence
gaattctcacaacagctgtgtaaggctcatgtacctgttttaactttgtt
atgatgataccaagataggttcacccagcaaacctcaggactctgataga
aacatatgatatcattttagacttagtatcttccctgaaagaactgtgtg
gagggcagttgccttgcactttccagcaactccatgcacctaccaccatt
agcttactgcagataatgatactgaaggtcttaaaagtgagagataaatg
ctgtgtataaaaatgaacaaatcatgtcaaaagggaatattaacccatag
atggatgaagtgaaatgaggaatgaagaatattaaatgggaaagaaagat
agagggatgttgaatgtagtataaaccagccataacttgtatgataagac
gtaccaaggagccaggatgagtgaagtaggatggtcaaaatgagcccatt
caggagatgggtcaatggtgtctgggatgctcagaagctatggtagggat
ttctgggtgaggtactggatggcagttgagcagaaaatgacccgacctga
tctgatatagctttaaaactttaagtgtctttcttgacaggaaagggatt
gtaggatgtgagacgggaacagagaagtgttggaggagtgttacagaggc
ccaaggagggattctattgaacaacatagcaggtgtccatagtgacaaga
gaggatctgattctagctctctgtccatagcacagccatggtaggaatta
ggagagtagacacagaaagaaagaaatgagagagcctcggggctgcctat
gtgtaggcagccactgactgacccaggagatggtgggaatctacttcttt
gagcttaatatctactagggagtcagcatttttatggtactttactctgc
tgctataatgaaacacacagtctctgtagaacagtctaaatacacgctgt
agacagcctgttccgacttcttccaagagaaaaacctattcatctgactg
attt
attctgaaatgcaaaaaaacatttttattgagaatatagacaagtatcaa
tttgtggtatattattacagtgtagcatcccaaagcacaatgcctgatgg
gagaagggtaggatgggagaggagaaggcagttagggagttgagaacact
tgggtaggaacagcagcaagagctttagtttcttgtctcttgtacactga
gtaaattacttcatgatctcactgtatctttacacacagacatgagtcat
tgtatgatgacaaaagtctaggaagagcccgaaagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_103586234_103587263
seq2: B6Ng01-035N05.b_50_1053

seq1  GAATTCTCACAACAGCTGTGTAAGGCTCATGTACCTGTTTTAACTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAACAGCTGTGTAAGGCTCATGTACCTGTTTTAACTTTGTT  50

seq1  ATGATGATACCAAGATAGGTTCACCCAGCAAACCTCAGGACTCTGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATACCAAGATAGGTTCACCCAGCAAACCTCAGGACTCTGATAGA  100

seq1  AACATATGATATCATTTTAGACTTAGTATCTTCCCTGAAAGAACTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGATATCATTTTAGACTTAGTATCTTCCCTGAAAGAACTGTGTG  150

seq1  GAGGGCAGTTGCCTTGCACTTTCCAGCAACTCCATGCACCTACCACCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGTTGCCTTGCACTTTCCAGCAACTCCATGCACCTACCACCATT  200

seq1  AGCTTACTGCAGATAATGATACTGAAGGTCTTAAAAGTGAGAGATAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTGCAGATAATGATACTGAAGGTCTTAAAAGTGAGAGATAAATG  250

seq1  CTGTGTATAAAAATGAACAAATCATGTCAAAAGGGAATATTAACCCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATAAAAATGAACAAATCATGTCAAAAGGGAATATTAACCCATAG  300

seq1  ATGGATGAAGTGAAATGAGGAATGAAGAATATTAAATGGGAAAGAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGAAGTGAAATGAGGAATGAAGAATATTAAATGGGAAAGAAAGAT  350

seq1  AGAGGGATGTTGAATGTAGTATAAACCAGCCATAACTTGTATGATAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATGTTGAATGTAGTATAAACCAGCCATAACTTGTATGATAAGAC  400

seq1  GTACCAAGGAGCCAGGATGAGTGAAGTAGGATGGTCAAAATGAGCCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGGAGCCAGGATGAGTGAAGTAGGATGGTCAAAATGAGCCCATT  450

seq1  CAGGAGATGGGTCAATGGTGTCTGGGATGCTCAGAAGCTATGGTAGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATGGGTCAATGGTGTCTGGGATGCTCAGAAGCTATGGTAGGGAT  500

seq1  TTCTGGGTGAGGTACTGGATGGCAGTTGAGCAGAAAATGACCCGACCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTGAGGTACTGGATGGCAGTTGAGCAGAAAATGACCCGACCTGA  550

seq1  TCTGATATAGCTTTAAAACTTTAAGTGTCTTTCTTGACAGGAAAGGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATAGCTTTAAAACTTTAAGTGTCTTTCTTGACAGGAAAGGGATT  600

seq1  GTAGGATGTGAGACGGGAACAGAGAAGTGTTGGAGGAGTGTTACAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGTGAGACGGGAACAGAGAAGTGTTGGAGGAGTGTTACAGAGGC  650

seq1  CCAAGGAGGGATTCTATTGAACAACATAGGCAGGTGTCCATAGTGACAAG  700
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCAAGGAGGGATTCTATTGAACAACATA-GCAGGTGTCCATAGTGACAAG  699

seq1  AGAGGATCTGATTCTAGCTCTCTGTCCATAGCACAGCCATGGTAGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCTGATTCTAGCTCTCTGTCCATAGCACAGCCATGGTAGGAATT  749

seq1  AAGGAGAGTAGACACAAGAAAGAAAGAAATGAGAAGAGCCCCGGGGCTGC  800
       |||||||||||||| ||||||||||||||||| |||||| |||||||||
seq2  -AGGAGAGTAGACAC-AGAAAGAAAGAAATGAG-AGAGCCTCGGGGCTGC  796

seq1  CTATGGTGTAGGCAGCCACTGACTGACCCCAGGAGATGGTGGGAATCTAC  850
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTAT-GTGTAGGCAGCCACTGACTGA-CCCAGGAGATGGTGGGAATCTAC  844

seq1  TTCTTTGGAGCTTAATATCTACTTAGGGAGTCAGCATTTTTATGGTACTT  900
      |||||| ||||||||||||||| ||||||||||||||||||||||||| |
seq2  TTCTTT-GAGCTTAATATCTAC-TAGGGAGTCAGCATTTTTATGGTAC-T  891

seq1  TTACTCCTGCTGCTATAAATGAAACACACAGTCTCCTGGTAGAACAGTCC  950
      ||||| |||||||||| ||||||||||||||||||   ||||||||||| 
seq2  TTACT-CTGCTGCTAT-AATGAAACACACAGTCTC--TGTAGAACAGTC-  936

seq1  TAAAATACACGCTGTAGACAGCCCTGTTTCCCGACTTCTTTCCCAAGAGA  1000
        ||||||||||||||||||| ||||||  ||||||||||  ||||||||
seq2  -TAAATACACGCTGTAGACAG-CCTGTT--CCGACTTCTT--CCAAGAGA  980

seq1  AAAAACACTATTCCAATCTGTACTGTATTT  1030
      ||||   ||||||  ||||| |||| ||||
seq2  AAAA--CCTATTC--ATCTG-ACTG-ATTT  1004

seq1: chr4_103726589_103726876
seq2: B6Ng01-035N05.g_74_361 (reverse)

seq1  CCTCTTTCGGGCTCTTCCTAGACTTTTGTCATCATACAATGACTCATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCGGGCTCTTCCTAGACTTTTGTCATCATACAATGACTCATGTC  50

seq1  TGTGTGTAAAGATACAGTGAGATCATGAAGTAATTTACTCAGTGTACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAAAGATACAGTGAGATCATGAAGTAATTTACTCAGTGTACAAG  100

seq1  AGACAAGAAACTAAAGCTCTTGCTGCTGTTCCTACCCAAGTGTTCTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAAACTAAAGCTCTTGCTGCTGTTCCTACCCAAGTGTTCTCAAC  150

seq1  TCCCTAACTGCCTTCTCCTCTCCCATCCTACCCTTCTCCCATCAGGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAACTGCCTTCTCCTCTCCCATCCTACCCTTCTCCCATCAGGCATT  200

seq1  GTGCTTTGGGATGCTACACTGTAATAATATACCACAAATTGATACTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGGGATGCTACACTGTAATAATATACCACAAATTGATACTTGTC  250

seq1  TATATTCTCAATAAAAATGTTTTTTTGCATTTCAGAAT  288
      ||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTCAATAAAAATGTTTTTTTGCATTTCAGAAT  288