BAC Information

Click to search

BAC

Clone NameB6Ng01-037J16
Chromosome4 (Build37)
Map Location 51,991,426 - 52,033,090
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666681, LOC100040814, LOC384015
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037J16.bB6Ng01-037J16.g
ACCDH865410DH865411
length1,0511,068
definitionDH865410|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J16, 5' end.DH865411|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,032,015 - 52,033,090)(51,991,426 - 51,992,505)
sequence
gaattctttattacaaaattgccaatgggtttgttactatttttatttct
gttatgctcagtctcttgaggatgtgttgattgatagaggagagtgtggt
gcttcacatttttatagtaaattataaagcaaaggggaaaaaacatggca
gtgaatcactggttctatactagtcagccatgatctaacattttatgact
cgtataaccaagctttttttatgtggagtttcaatgtctactctatgtag
ttctaccttctctgtcaggatagcctatcacacctataggtaaggaatac
caaaattctcaaactattgtctttttatgatcattcaaacagtgatagag
actttatataaaattcatggacttgttcagagaagaaagtcagcaaattt
taagattactaaatcatatctagggttgaataattaataccaatttttta
aaaataatgatcacgcttagattttcacattcacaaagagaaacatatgg
ggtgaaatgtgggaggaaaatgtaattttacagtgaagactaagcttaag
acttgaaagatggtcagctgataagggcaaatacatgaaacagtactgaa
gattaaaatatagaattcatcctcagttcttaagtctaataagactgtca
ggtgatatgtctaataccatttccttcagctacttattgatgcattttct
ttcaaagaaaaatatatcataattatgaaattactatagctgattaactt
cattattgtttcattaagtcattgaaataaatataaatccaggcatggaa
actacaattgctaaatttgatctgaaacactaatgattgctgtgggggtt
gagctctgacagtgatagcaactgcagaggcctgtggcatcttctggcta
ctgatgacctctcggttatttctagcgttctagatgagtctcttgtgtca
taaatatttccgagccacaagactaactattatatatatatgattatata
tatgtatttcctcaatatattcaatgctatcccaatgtcccccaactccc
c
gaattctctcttgtttctcttaaattgtctgatttccagtgtttccatat
tgagaactatgaaacaagctggctaaactatttatttgattatttattta
tttatttatttatttatttatttaatttatttatttctgtgcaattggca
caatgaatggcagtttcaattactttctgtatctctgtgaaaagagatat
tcagtatcccaattagatgaaagagaaagcaacaaagtattgggggagaa
aaacaagaacagaatagaattggaaatgaggatggatattaattatccaa
aagaccttcaaagttgcatcagggaaaagttcatttttgttttcagcctg
acaaatccacacaacctcagtcatggctacaaaaggcaggtgcttccttt
gcccttgcagaggaataaatcgtgatgagtcttaatgtgcctcagcatac
tttctcgaaagctttgctaatgcatgctggtttacctacaacacgttttc
cagaaactgttgagtgaaacgacaacacatatacttagtttcacacttta
gtctgtccaattaacagtgttcgctgtgctggctgtgagcccgaaagagg
atttaattttaagtacagtggtctagttaacaaaaaagaaatggggggaa
ggctgactcatgaatgttcagagtgttagactctaatcgtttgtttctgc
aaaattgctctgtattgctattactgggagctgctcaaagtattcgctcc
tgaaattctataaagaaatggctttaagctgttagagtgggcagtaatga
tctctgtttaaaattacaggacatcttaggcaggccataaaaccctcagg
gatcaataatttatggtagagtttttaaaacaggccaaaagagaaataaa
aatagattcacttttaatggattattaatttattttttcattatatctag
gcattatatagcttctcctctagatactgatctgggggctactatgctac
ttaccatagtaacataaaaacatatgtaatttaaaatacaatgattgttt
gtgaattaggtgttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52032015_52033090
seq2: B6Ng01-037J16.b_40_1090 (reverse)

seq1  GGGGAGTTGGGGGGAGGGTGTGGGGGACTTTTGGGATAGCATTTGAAATA  50
                ||||||    ||||||||  |||||||||||||   ||||
seq2  ----------GGGGAG---TTGGGGGAC-ATTGGGATAGCATT--GAATA  34

seq1  TAATTGAGGAAAATACATTATAATAATAATCATATATATATAATAGTTAG  100
      | ||||||| ||||||| ||||   |||||||||||||||||||||||||
seq2  T-ATTGAGG-AAATACA-TATA--TATAATCATATATATATAATAGTTAG  79

seq1  TCTTTGTGTGCTTCGGAAATATTTATGAACACAAGAGACTCATCTAGAAC  150
      |||   ||||  ||||||||||||||| ||||||||||||||||||||||
seq2  TCT---TGTGGCTCGGAAATATTTATG-ACACAAGAGACTCATCTAGAAC  125

seq1  GCTAGAAATAACCGAGAGGTCATCAGTAGCCAGAAGATGCCACAGGCCTT  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTAGAAATAACCGAGAGGTCATCAGTAGCCAGAAGATGCCACAGGCC-T  174

seq1  CTGCAGTTGCTATCACTGTCAGAGCTCAA-CCCCACAGCAATCATTAGTG  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGCAGTTGCTATCACTGTCAGAGCTCAACCCCCACAGCAATCATTAGTG  224

seq1  TTTCAGATCAAATTTAGCAATTGTAGTTTCCATGCCTGGATTTATATTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATCAAATTTAGCAATTGTAGTTTCCATGCCTGGATTTATATTTA  274

seq1  TTTCAATGACTTAATGAAACAATAATGAAGTTAATCAGCTATAGTAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGACTTAATGAAACAATAATGAAGTTAATCAGCTATAGTAATTT  324

seq1  CATAATTATGATATATTTTTCTTTGAAAGAAAATGCATCAATAAGTAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTATGATATATTTTTCTTTGAAAGAAAATGCATCAATAAGTAGCT  374

seq1  GAAGGAAATGGTATTAGACATATCACCTGACAGTCTTATTAGACTTAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATGGTATTAGACATATCACCTGACAGTCTTATTAGACTTAAGA  424

seq1  ACTGAGGATGAATTCTATATTTTAATCTTCAGTACTGTTTCATGTATTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATGAATTCTATATTTTAATCTTCAGTACTGTTTCATGTATTTG  474

seq1  CCCTTATCAGCTGACCATCTTTCAAGTCTTAAGCTTAGTCTTCACTGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATCAGCTGACCATCTTTCAAGTCTTAAGCTTAGTCTTCACTGTAA  524

seq1  AATTACATTTTCCTCCCACATTTCACCCCATATGTTTCTCTTTGTGAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTTTCCTCCCACATTTCACCCCATATGTTTCTCTTTGTGAATG  574

seq1  TGAAAATCTAAGCGTGATCATTATTTTTAAAAAATTGGTATTAATTATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTAAGCGTGATCATTATTTTTAAAAAATTGGTATTAATTATTC  624

seq1  AACCCTAGATATGATTTAGTAATCTTAAAATTTGCTGACTTTCTTCTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGATATGATTTAGTAATCTTAAAATTTGCTGACTTTCTTCTCTG  674

seq1  AACAAGTCCATGAATTTTATATAAAGTCTCTATCACTGTTTGAATGATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTCCATGAATTTTATATAAAGTCTCTATCACTGTTTGAATGATCA  724

seq1  TAAAAAGACAATAGTTTGAGAATTTTGGTATTCCTTACCTATAGGTGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGACAATAGTTTGAGAATTTTGGTATTCCTTACCTATAGGTGTGA  774

seq1  TAGGCTATCCTGACAGAGAAGGTAGAACTACATAGAGTAGACATTGAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTATCCTGACAGAGAAGGTAGAACTACATAGAGTAGACATTGAAAC  824

seq1  TCCACATAAAAAAAGCTTGGTTATACGAGTCATAAAATGTTAGATCATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAAAAAAAGCTTGGTTATACGAGTCATAAAATGTTAGATCATGG  874

seq1  CTGACTAGTATAGAACCAGTGATTCACTGCCATGTTTTTTCCCCTTTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGTATAGAACCAGTGATTCACTGCCATGTTTTTTCCCCTTTGCT  924

seq1  TTATAATTTACTATAAAAATGTGAAGCACCACACTCTCCTCTATCAATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTACTATAAAAATGTGAAGCACCACACTCTCCTCTATCAATCA  974

seq1  ACACATCCTCAAGAGACTGAGCATAACAGAAATAAAAATAGTAACAAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCTCAAGAGACTGAGCATAACAGAAATAAAAATAGTAACAAACC  1024

seq1  CATTGGCAATTTTGTAATAAAGAATTC  1076
      |||||||||||||||||||||||||||
seq2  CATTGGCAATTTTGTAATAAAGAATTC  1051

seq1: chr4_51991426_51992505
seq2: B6Ng01-037J16.g_69_1136

seq1  GAATTCTCTCTTGTTTCTCTTAAATTGTCTGATTTCCAGTGTTTCCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTGTTTCTCTTAAATTGTCTGATTTCCAGTGTTTCCATAT  50

seq1  TGAGAACTATGAAACAAGCTGGCTAAACTATTTATTTGATTATTTATTTA  100
      |||||||||||||||||||||||||||||||||||||||    |||||||
seq2  TGAGAACTATGAAACAAGCTGGCTAAACTATTTATTTGA----TTATTTA  96

seq1  TTTATTTATTTATTTATTTATTTATTTAATTTATTTATTTCTGTGCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTAATTTATTTATTTCTGTGCAATT  146

seq1  GGCACAATGAATGGCAGTTTCAATTACTTTCTGTATCTCTGTGAAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAATGAATGGCAGTTTCAATTACTTTCTGTATCTCTGTGAAAAGAG  196

seq1  ATATTCAGTATCCCAATTAGATGAAAGAGAAAGCAACAAAGTATTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGTATCCCAATTAGATGAAAGAGAAAGCAACAAAGTATTGGGGG  246

seq1  AGAAAAACAAGAACAGAATAGAATTGGAAATGAGGATGGATATTAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAAGAACAGAATAGAATTGGAAATGAGGATGGATATTAATTAT  296

seq1  CCAAAAGACCTTCAAAGTTGCATCAGGGAAAAGTTCATTTTTGTTTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGACCTTCAAAGTTGCATCAGGGAAAAGTTCATTTTTGTTTTCAG  346

seq1  CCTGACAAATCCACACAACCTCAGTCATGGCTACAAAAGGCAGGTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAATCCACACAACCTCAGTCATGGCTACAAAAGGCAGGTGCTTC  396

seq1  CTTTGCCCTTGCAGAGGAATAAATCGTGATGAGTCTTAATGTGCCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCTTGCAGAGGAATAAATCGTGATGAGTCTTAATGTGCCTCAGC  446

seq1  ATACTTTCTCGAAAGCTTTGCTAATGCATGCTGGTTTACCTACAACACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCTCGAAAGCTTTGCTAATGCATGCTGGTTTACCTACAACACGT  496

seq1  TTTCCAGAAACTGTTGAGTGAAACGACAACACATATACTTAGTTTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAACTGTTGAGTGAAACGACAACACATATACTTAGTTTCACAC  546

seq1  TTTAGTCTGTCCAATTAACAGTGTTCGCTGTGCTGGCTGTGAGCCCGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTGTCCAATTAACAGTGTTCGCTGTGCTGGCTGTGAGCCCGAAA  596

seq1  GAGGATTTAATTTTAAGTACAGTGGTCTAGTTAACAAAAAAGAAATGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTAATTTTAAGTACAGTGGTCTAGTTAACAAAAAAGAAATGGGG  646

seq1  GGAAGGCTGACTCATGAATGTTCAGAGTGTTAGACTCTAATCGTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTGACTCATGAATGTTCAGAGTGTTAGACTCTAATCGTTTGTTT  696

seq1  CTGCAAAATTGCTCTGTATTGCTATTACTGGGAGCTGCTCAAAGTATTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAATTGCTCTGTATTGCTATTACTGGGAGCTGCTCAAAGTATTCG  746

seq1  CTCCTGAAATTCTATAAAGAAATGGCTTTAAGCTGTTAGAGTGGGCAGT-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCCTGAAATTCTATAAAGAAATGGCTTTAAGCTGTTAGAGTGGGCAGTA  796

seq1  ATGATCTCTGTTTAAAAATTACAGGACATCTTAGGCAGGCCATAAAAACC  849
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  ATGATCTCTGTTT-AAAATTACAGGACATCTTAGGCAGGCCAT-AAAACC  844

seq1  CTCAGGGATCAATAA-TTATGTAAGAG-TTTTAAAACAGGCCAAAAGAGA  897
      ||||||||||||||| |||||  |||| ||||||||||||||||||||||
seq2  CTCAGGGATCAATAATTTATGGTAGAGTTTTTAAAACAGGCCAAAAGAGA  894

seq1  AATAAAAATAGATTCACTTTTAATGGATTATTAATTTATTTTATTCATTT  947
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  AATAAAAATAGATTCACTTTTAATGGATTATTAATTTATTTT-TTCATT-  942

seq1  AATATCTAGGCAATATATAGCTTCT-CTCTAGGATACTGAATCTGGGGGC  996
       ||||||||||| |||||||||||| ||||| ||||||| ||||||||||
seq2  -ATATCTAGGCATTATATAGCTTCTCCTCTA-GATACTG-ATCTGGGGGC  989

seq1  TACATATGCTACTTAACATAGTAACATAAAAACATATGTAATTTAAAAAT  1046
      ||| ||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TAC-TATGCTACTTACCATAGTAACATAAAAACATATGTAATTT-AAAAT  1037

seq1  ACAAATGATTGTTTTGTGAAATAGGGTGTTATTT  1080
      || |||||||| |||||||| || ||||||||||
seq2  AC-AATGATTG-TTTGTGAATTA-GGTGTTATTT  1068