BAC Information

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BAC

Clone NameB6Ng01-037L07
Chromosome4 (Build37)
Map Location 139,768,581 - 139,848,647
singlet/doubletdoublet
Overlap geneIgsf21, LOC100040728
Upstream geneCapzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
Downstream geneArhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037L07.bB6Ng01-037L07.g
ACCDH865484DH865485
length8761,035
definitionDH865484|Mus musculus domesticus DNA, BAC clone: B6Ng01-037L07, 5' end.DH865485|Mus musculus domesticus DNA, BAC clone: B6Ng01-037L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,768,581 - 139,769,458)(139,847,604 - 139,848,647)
sequence
gaattcctcttccctcctagcacacagtattaaaccaaacacttcattat
ccgcctcttacctttctgattagcataaatgggggaaaacttgagagcag
gcaacactaattaacacctgggggtgcctggggcttgtggtctgttggta
atttctgccctggcccagggctggtgctgtccagggcacagctaggcagg
ggccatagcaagaggtcctgaggttgggtgtatggtgtggtgagcatatg
taaggcagtcacattccagcgacttgcggtctgatggaggaggcatggag
cttgcatcgagtgagggagcccattctgatggtgggaaatgatcctgtgg
gtaactccctagtctgatggggaggccctggtccttcctctgcaggctcc
cgggctagtgggaactgcatagcttctgtccctacgcagtctgtagtgtc
tgatggaggtgatcctaagatgatcctgcgtccagtgggaaagcatgctt
gcctgtgaggacctgtctgtcagaggcaatttgatgaagcaggaaaacca
tgaatctggagccaaaggatccaaatctgtgaccccaggaaagttactta
gcctttcttaattgctgcttcctcatctgcaaaatagccacttagtgccc
attagccctgcagccaataagaggggtcaaatttgcctaattcccaactg
ttgacctgaccccacggcagcaggagcaggagcagactcatctgctgcag
gaggatgacctggactcacagagaacccaagcccctgcctaggaaggctg
cagatgatgtttgctcagagacccacagagccacagcatgtggaccgagt
gaccactggtgatgtccctcactgca
gaattcatttctcgaacaggggaagggaagggcttgaaaagaaagaaaga
aagaaagaaaagctaccagggtcatgagtctgaaaggtcaaattacagga
cccctctacagctaggagttcaggacacaatctggatattatggggctct
cgtggcatgccatgctgaagtgtgaggatctgcaaggtgctccagacggc
ttctgcattccttgcaccgtctgcctattgctagagaaggggagagcaga
tgtgagccagaatcagtcaccaatcccttatcctgagcatgcaaccccat
gtctctggcctccagctctgcatcgccatgagcatcaccatgagctgacc
acgccctcaccccaacccccatctcagagaagtttccctggagcttgcaa
ggagagactgacttctagacttccaagccctttcttcctggagtttggac
atgatctctggggtggtctgtccagaggagacagtcatgccaccactccc
tgtgtcatcgtaaaatgtcaggatgtctgtgctctttatttatagacata
ttgcttttcaacttttctcactccaacatttcagtgtgttatttctgaag
ataaatgcacattacagtttcataatagaaactgcatctctcccgagtgt
cacctcttagcatgtatatacataaatatggcacattgcctctgacagta
atttaaaaggcactttggggaacatattgatcatgaccgaggagctgagc
tggcacggtctggatttcatagaatccgcctcctcccagccctggcgttg
gaagccggggacttatggtttcattaatctttgtatatttggggtgctct
tttaaagcaccatgaagcttcgagaggaggggaaaacaaatgttataact
ggagtggtaaacaaaaatgggggaattgcttcattgaagccgactcccct
ccagagcaaatggccaggaaggcagcaccctttctagatgaacccagttt
tctgtgggaggccattgaggctgacatggaccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_139768581_139769458
seq2: B6Ng01-037L07.b_48_923

seq1  GAATTCCTCTTCCCTCCTAGCACACAGTATTAAACCAAACACTTCATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCCCTCCTAGCACACAGTATTAAACCAAACACTTCATTAT  50

seq1  CCGCCTCTTACCTTTCTGATTAGCATAAATGGGGGAAAACTTGAGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCTTACCTTTCTGATTAGCATAAATGGGGGAAAACTTGAGAGCAG  100

seq1  GCAACACTAATTAACACCTGGGGGTGCCTGGGGCTTGTGGTCTGTTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACTAATTAACACCTGGGGGTGCCTGGGGCTTGTGGTCTGTTGGTA  150

seq1  ATTTCTGCCCTGGCCCAGGGCTGGTGCTGTCCAGGGCACAGCTAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCCCTGGCCCAGGGCTGGTGCTGTCCAGGGCACAGCTAGGCAGG  200

seq1  GGCCATAGCAAGAGGTCCTGAGGTTGGGTGTATGGTGTGGTGAGCATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGCAAGAGGTCCTGAGGTTGGGTGTATGGTGTGGTGAGCATATG  250

seq1  TAAGGCAGTCACATTCCAGCGACTTGCGGTCTGATGGAGGAGGCATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGTCACATTCCAGCGACTTGCGGTCTGATGGAGGAGGCATGGAG  300

seq1  CTTGCATCGAGTGAGGGAGCCCATTCTGATGGTGGGAAATGATCCTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATCGAGTGAGGGAGCCCATTCTGATGGTGGGAAATGATCCTGTGG  350

seq1  GTAACTCCCTAGTCTGATGGGGAGGCCCTGGTCCTTCCTCTGCAGGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCCTAGTCTGATGGGGAGGCCCTGGTCCTTCCTCTGCAGGCTCC  400

seq1  CGGGCTAGTGGGAACTGCATAGCTTCTGTCCCTACGCAGTCTGTAGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTAGTGGGAACTGCATAGCTTCTGTCCCTACGCAGTCTGTAGTGTC  450

seq1  TGATGGAGGTGATCCTAAGATGATCCTGCGTCCAGTGGGAAAGCATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGGTGATCCTAAGATGATCCTGCGTCCAGTGGGAAAGCATGCTT  500

seq1  GCCTGTGAGGACCTGTCTGTCAGAGGCAATTTGATGAAGCAGGAAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGGACCTGTCTGTCAGAGGCAATTTGATGAAGCAGGAAAACCA  550

seq1  TGAATCTGGAGCCAAAGGATCCAAATCTGTGACCCCAGGAAAGTTACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGGAGCCAAAGGATCCAAATCTGTGACCCCAGGAAAGTTACTTA  600

seq1  GCCTTTCTTAATTGCTGCTTCCTCATCTGCAAAATAGCCACTTAGTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTTAATTGCTGCTTCCTCATCTGCAAAATAGCCACTTAGTGCCC  650

seq1  ATTAGCCCTGCAGCCAATAAGAGGGGTCAAATTTGCCTAATTCCCAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCTGCAGCCAATAAGAGGGGTCAAATTTGCCTAATTCCCAACTG  700

seq1  TTGACCTGACCCCACGGCAGCAGGAGCAGGAGCAGACTCAGCTGCTGCAG  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGACCTGACCCCACGGCAGCAGGAGCAGGAGCAGACTCATCTGCTGCAG  750

seq1  GAGGATGACCTGGACTCACAGAGAACCCAAGCCCCTGCCTAGGAAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGACCTGGACTCACAGAGAACCCAAGCCCCTGCCTAGGAAGGCTG  800

seq1  CAGATGAGGTTTGCTGCAGAGACCCACAGAGCCACAGCATGTGGACCGAG  850
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGATGATGTTTGCT-CAGAGACCCACAGAGCCACAGCATGTGGACCGAG  849

seq1  TGACCACAGGGTGAGGTCCCTCACTGCA  878
      |||||||  ||||| |||||||||||||
seq2  TGACCAC-TGGTGATGTCCCTCACTGCA  876

seq1: chr4_139847604_139848647
seq2: B6Ng01-037L07.g_72_1106 (reverse)

seq1  CAGGGTCCATGGACAGCCTCAGATGGCCTCCCACAGGAAAACCTGGGGTT  50
      |||||||||| | |||||||| ||||||||||||| ||||||   |||||
seq2  CAGGGTCCAT-GTCAGCCTCA-ATGGCCTCCCACA-GAAAAC--TGGGTT  45

seq1  CATCTGAGAAAGGAGTGCTGGCTTCCTGGCCATTTGCTCTGGTGTGGAGT  100
      ||||| ||||||| |||||| ||||||||||||||||||||| | |||||
seq2  CATCT-AGAAAGG-GTGCTGCCTTCCTGGCCATTTGCTCTGGAGGGGAGT  93

seq1  CTGCATTCATTGCTGCATTTCCCCCGTTTTTTGTTTA-CACTCCAGTTAT  149
      | || |||| ||  ||| |||||||  |||||||||| ||||||||||||
seq2  CGGC-TTCAATGAAGCAATTCCCCC-ATTTTTGTTTACCACTCCAGTTAT  141

seq1  AACATTTTGTTTTCCCCTCCTCTCGAAGC-TCATGGTGCTTTTAAAAGAG  198
      |||| |||||||||||||||||||||||| ||||||||| ||||||||||
seq2  AACA-TTTGTTTTCCCCTCCTCTCGAAGCTTCATGGTGC-TTTAAAAGAG  189

seq1  CACCCC-AATATACAAAGATTAATGAAAACCATAAGTCCCCGGCTTCCAA  247
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  CACCCCAAATATACAAAGATTAATG-AAACCATAAGTCCCCGGCTTCCAA  238

seq1  CGCCAGGGCTGGGAGGAGGCGGATTCTATGAAATCCAGACCGTGCCAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGGCTGGGAGGAGGCGGATTCTATGAAATCCAGACCGTGCCAGCT  288

seq1  CAGCTCCTCGGTCATGATCAATATGTTCCCCAAAGTGCCTTTTAAATTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTCGGTCATGATCAATATGTTCCCCAAAGTGCCTTTTAAATTAC  338

seq1  TGTCAGAGGCAATGTGCCATATTTATGTATATACATGCTTAGAGGTGACA  397
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTCAGAGGCAATGTGCCATATTTATGTATATACATGCTAAGAGGTGACA  388

seq1  CTCGGGAGAGATGCAGTTTCTATTATGAAACTGTAATGTGCATTTATCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGAGATGCAGTTTCTATTATGAAACTGTAATGTGCATTTATCTT  438

seq1  CAGAAATAACACACTGAAATGTTGGAGTGAGAAAAGTTGAAAAGCAATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAACACACTGAAATGTTGGAGTGAGAAAAGTTGAAAAGCAATAT  488

seq1  GTCTATAAATAAAGAGCACAGACATCCTGACATTTTACGATGACACAGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAAATAAAGAGCACAGACATCCTGACATTTTACGATGACACAGGG  538

seq1  AGTGGTGGCATGACTGTCTCCTCTGGACAGACCACCCCAGAGATCATGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGCATGACTGTCTCCTCTGGACAGACCACCCCAGAGATCATGTC  588

seq1  CAAACTCCAGGAAGAAAGGGCTTGGAAGTCTAGAAGTCAGTCTCTCCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCAGGAAGAAAGGGCTTGGAAGTCTAGAAGTCAGTCTCTCCTTG  638

seq1  CAAGCTCCAGGGAAACTTCTCTGAGATGGGGGTTGGGGTGAGGGCGTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCCAGGGAAACTTCTCTGAGATGGGGGTTGGGGTGAGGGCGTGGT  688

seq1  CAGCTCATGGTGATGCTCATGGCGATGCAGAGCTGGAGGCCAGAGACATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATGGTGATGCTCATGGCGATGCAGAGCTGGAGGCCAGAGACATG  738

seq1  GGGTTGCATGCTCAGGATAAGGGATTGGTGACTGATTCTGGCTCACATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCATGCTCAGGATAAGGGATTGGTGACTGATTCTGGCTCACATCT  788

seq1  GCTCTCCCCTTCTCTAGCAATAGGCAGACGGTGCAAGGAATGCAGAAGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCCTTCTCTAGCAATAGGCAGACGGTGCAAGGAATGCAGAAGCC  838

seq1  GTCTGGAGCACCTTGCAGATCCTCACACTTCAGCATGGCATGCCACGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGCACCTTGCAGATCCTCACACTTCAGCATGGCATGCCACGAGA  888

seq1  GCCCCATAATATCCAGATTGTGTCCTGAACTCCTAGCTGTAGAGGGGTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATAATATCCAGATTGTGTCCTGAACTCCTAGCTGTAGAGGGGTCC  938

seq1  TGTAATTTGACCTTTCAGACTCATGACCCTGGTAGCTTTTCTTTCTTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGACCTTTCAGACTCATGACCCTGGTAGCTTTTCTTTCTTTCT  988

seq1  TTCTTTCTTTTCAAGCCCTTCCCTTCCCCTGTTCGAGAAATGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTCAAGCCCTTCCCTTCCCCTGTTCGAGAAATGAATTC  1035