BAC Information

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BAC

Clone NameB6Ng01-039A03
Chromosome4 (Build37)
Map Location 11,942,754 - 12,081,031
singlet/doubletdoublet
Overlap geneTmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik
Upstream gene2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c
Downstream geneLOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039A03.bB6Ng01-039A03.g
ACCDH866402DH866403
length1,0721,153
definitionDH866402|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A03, 5' end.DH866403|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,942,754 - 11,943,834)(12,079,856 - 12,081,031)
sequence
gaattccagataagaacacttttgctagatcaagccatctttacttacat
tctccataggatgcaagcttactggcctttattctacttcttctttgagg
aatgaaacattttgtctgctgatgctgcttaaaagttgtctattagacaa
ccagtcagtgacctgtcctgtctgcagaaagccagctgagatctgtagtt
ctgtctccaagcaggtggggatatggttgtcctttcaatgcattggctag
aagctccccctgccaagaactgaacgctttaattctgtgattcatcaaag
ccgttccttatacctggtgtcaagtaacctttcttttcaggaggtctaac
ccaatagcctcccagacctcaggatgaaagcaggcagcgtgtacactgtg
tgcaagaaggacaaagaagaaacacactcaaagccgagccccatgttaca
taatgcctgtgtttgaagatccatgacccataaaacatttacctactttg
tggggtttaaataaagcagagtggtgttcctttttaaagaactactttac
agttacctttctgtcagaattccaattattctatgactcagtgggtatgt
gtctagcttttacaaaagactccttttttattattttggataagaatgaa
gaagttttcatatgaagtttgtaaagaacatgtttatataacaatgcata
gctgcatcaaacacatacacacttcatttcatttcatgtttgaagtaaag
tattttaaatgctatttaagaatggaggcttccccataggggaaggacat
tctctttggcctgtttatctgagactctggagcctgtctctcccagaact
cttgtacactgggtgtagcctgggacttgctctgtcccgtggagtatgtt
cagaatgaggtactttccttcctctgtccctttgaaagttctgtgtgact
ctgtttcctgagtgaccaggattccaacagtcccctaatagagtcaaagt
cacaaaacaagtggccatgccatctaatatgtgcatgtgactggaacttg
agaagttaagaaaaaatttcat
gaattcacatttctgtttttatgtcatctaacttgcaaatgtagaatcac
tttaaactcacttgacaggttaaactgtaaaatgaaatgctattatgaaa
ctgggggcagaggggaaattaaaggaaattatgctgattaaaaaaaagat
ttttttttctggattacatagtctttctttcatcatcctacatatggtag
tgtatatttttctatatatgttctattaaaaaagattgtatttctaagca
tttcagatttaatgcactataaattcatgtgtgactcacaaaatcacata
cctattaaaggtgaagaaagtatgtgagtaacaaaagatttaataatgcc
tcatactttcttttaggataaaatttgaggttttgattaccagaagaggt
cagttaataatcctatgccctaatgccttaagtaaaaacactgcttcttt
tacttttattatataaccttatgtttcatcatctggtatgaaaatttagt
gtttttaactaaaattgaacacagtaatgatttgagatactgataacagg
ttttataagtgtatatataaatgattacattctaattttaaaaggccaca
ttcaacctttcgtgttttaaaacaaaactgctctcactctacagctctgc
acattctacttgtataagttattaataattggaaggcaagtactttgcta
aaaatgttgccttatcttagaatgtcataaagcattaaacacactctgct
gtcttatcaagccaccactgtcaacatgtatatgctttactcctaaagct
acaaaatatttgttatatctttaccattttctttggtaaagaaccatgct
tttgtgactctcaaagcaatgatcaaaacagaaaagtttgttttcaacaa
agatttgcttcctgagaatacttttaaaattactttggaacattctaaga
tgaaatgctaagactactttaaagcccctaggcaagtataaggaagtgag
gtgttactgaaattttatatattcttggtcagtataaattggatgtcgag
gaatagctatgaattctgatgctgctcaacaaagtctctcaagcatcact
gactcacaagtaatgctagggcgcaactggggcagtcgctgttctcaaaa
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11942754_11943834
seq2: B6Ng01-039A03.b_45_1116

seq1  GAATTCCAGATAAGAACACTTTTGCTAGATCAAGCCATCTTTACTTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAAGAACACTTTTGCTAGATCAAGCCATCTTTACTTACAT  50

seq1  TCTCCATAGGATGCAAGCTTACTGGCCTTTATTCTACTTCTTCTTTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATAGGATGCAAGCTTACTGGCCTTTATTCTACTTCTTCTTTGAGG  100

seq1  AATGAAACATTTTGTCTGCTGATGCTGCTTAAAAGTTGTCTATTAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACATTTTGTCTGCTGATGCTGCTTAAAAGTTGTCTATTAGACAA  150

seq1  CCAGTCAGTGACCTGTCCTGTCTGCAGAAAGCCAGCTGAGATCTGTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGTGACCTGTCCTGTCTGCAGAAAGCCAGCTGAGATCTGTAGTT  200

seq1  CTGTCTCCAAGCAGGTGGGGATATGGTTGTCCTTTCAATGCATTGGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCAAGCAGGTGGGGATATGGTTGTCCTTTCAATGCATTGGCTAG  250

seq1  AAGCTCCCCCTGCCAAGAACTGAACGCTTTAATTCTGTGATTCATCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCCCCTGCCAAGAACTGAACGCTTTAATTCTGTGATTCATCAAAG  300

seq1  CCGTTCCTTATACCTGGTGTCAAGTAACCTTTCTTTTCAGGAGGTCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCCTTATACCTGGTGTCAAGTAACCTTTCTTTTCAGGAGGTCTAAC  350

seq1  CCAATAGCCTCCCAGACCTCAGGATGAAAGCAGGCAGCGTGTACACTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGCCTCCCAGACCTCAGGATGAAAGCAGGCAGCGTGTACACTGTG  400

seq1  TGCAAGAAGGACAAAGAAGAAACACACTCAAAGCCGAGCCCCATGTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAGGACAAAGAAGAAACACACTCAAAGCCGAGCCCCATGTTACA  450

seq1  TAATGCCTGTGTTTGAAGATCCATGACCCATAAAACATTTACCTACTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTGTGTTTGAAGATCCATGACCCATAAAACATTTACCTACTTTG  500

seq1  TGGGGTTTAAATAAAGCAGAGTGGTGTTCCTTTTTAAAGAACTACTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTAAATAAAGCAGAGTGGTGTTCCTTTTTAAAGAACTACTTTAC  550

seq1  AGTTACCTTTCTGTCAGAATTCCAATTATTCTATGACTCAGTGGGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTTTCTGTCAGAATTCCAATTATTCTATGACTCAGTGGGTATGT  600

seq1  GTCTAGCTTTTACAAAAGACTCCTTTTTTATTATTTTGGATAAGAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCTTTTACAAAAGACTCCTTTTTTATTATTTTGGATAAGAATGAA  650

seq1  GAAGTTTTCATATGAAGTTTGTAAAGAACATGTTTATATAACAATGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTCATATGAAGTTTGTAAAGAACATGTTTATATAACAATGCATA  700

seq1  GCTGCATCAAACACATACACACTTCATTTCATTTCATGTTTGAAGTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCAAACACATACACACTTCATTTCATTTCATGTTTGAAGTAAAG  750

seq1  TATTTTAAATGCTATTTAAGAATGGAGGCTTCCCCATAGGGGAAGGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATGCTATTTAAGAATGGAGGCTTCCCCATAGGGGAAGGACAT  800

seq1  TCTCTTTGGCCTGTTTATCTGAGACTCTGGAGCCTGTCTCTCCCAGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGGCCTGTTTATCTGAGACTCTGGAGCCTGTCTCTCCCAGAACT  850

seq1  CTTGTACACTGGGTGTAGCCTGGGACTTGCTCTGTCCCGTGGAGTATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACACTGGGTGTAGCCTGGGACTTGCTCTGTCCCGTGGAGTATGTT  900

seq1  CAGAATGAGGTACTTTCCTTCCTCTGTCCCTTTGAAAGTTCTGTGTGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAGGTACTTTCCTTCCTCTGTCCCTTTGAAAGTTCTGTGTGACT  950

seq1  CTGTTTCCTGAGTGACACAGGATTCAAACAGTCCCCTAAAGAGAGTCAAA  1000
      |||||||||||||||| |||||||| ||||||||||| || |||||||||
seq2  CTGTTTCCTGAGTGAC-CAGGATTCCAACAGTCCCCT-AATAGAGTCAAA  998

seq1  GTCACAAAACAAGTGGCCACATGCCAATCATATATGTGCATGTGACTGTG  1050
      |||||||||||||||||  |||||| |||  ||||||||||||||||| |
seq2  GTCACAAAACAAGTGGC--CATGCC-ATCTAATATGTGCATGTGACTG-G  1044

seq1  AACTTTGAGAAGTTAAGAAATAAAATTTCAT  1081
      ||| |||||||||||||||  ||||||||||
seq2  AAC-TTGAGAAGTTAAGAA--AAAATTTCAT  1072

seq1: chr4_12079856_12081031
seq2: B6Ng01-039A03.g_67_1219 (reverse)

seq1  CATTTTCTGAAGAACAGCGACTGCCCACAGTTGCGGCGCCTTAGACATTA  50
      |||||| || |||||||||||||||| |||||   ||||| ||| |||| 
seq2  CATTTT-TG-AGAACAGCGACTGCCC-CAGTT---GCGCCCTAG-CATT-  42

seq1  ACTTGGTGAGTCAGCTGATGCTTGAGAGAACTGTTTGTTGAGCAGCATCA  100
      |||| ||||||||| ||||||||||||||    |||||||||||||||||
seq2  ACTT-GTGAGTCAG-TGATGCTTGAGAGA---CTTTGTTGAGCAGCATCA  87

seq1  GAAATTCCATAGCTATTTCCTCCGAACATCCAATTTTAATACTGACCAAG  150
      |||  | |||||||| ||||||   |||||||||||  ||||||||||||
seq2  GAA--TTCATAGCTA-TTCCTC--GACATCCAATTT--ATACTGACCAAG  130

seq1  AATATATAAAATTTCAGTAACAACCTCACTTCCTTAATACCTGCCTAGGG  200
      ||||||||||||||||||||| ||||||||||||| |||| |||||||||
seq2  AATATATAAAATTTCAGTAAC-ACCTCACTTCCTT-ATACTTGCCTAGGG  178

seq1  GCTTTAAAGTAGTCTTAAGCATTTCATCTTAGAATGTTCCAAAGTAATTT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTTTAAAGTAGTCTT-AGCATTTCATCTTAGAATGTTCCAAAGTAATTT  227

seq1  TAAAAGTATTCTCAGGAAGCAATTCTTTGTTGAAAACAAACTTTTCTGTT  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAAAAGTATTCTCAGGAAGCAAATCTTTGTTGAAAACAAACTTTTCTGTT  277

seq1  TTGATCATTGCTTTGAGAGTCACAAAAGCATGGTTCTTTACCAAAAGAAA  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGATCATTGCTTTGAGAGTCACAAAAGCATGGTTCTTTACC-AAAGAAA  326

seq1  ATGGT-AAGATATAACAAATATTTTGTAGCTTTAGGAGTAAAGCATATAC  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAGATATAACAAATATTTTGTAGCTTTAGGAGTAAAGCATATAC  376

seq1  ATGTTGACAGTGGTGGCTTGATAAGACAGCAGAGTGTGTTTAATGCTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGACAGTGGTGGCTTGATAAGACAGCAGAGTGTGTTTAATGCTTTA  426

seq1  TGACATTCTAAGATAAGGCAACATTTTTAGCAAAGTACTTGCCTTCCAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTAAGATAAGGCAACATTTTTAGCAAAGTACTTGCCTTCCAAT  476

seq1  TATTAATAACTTATACAAGTAGAATGTGCAGAGCTGTAGAGTGAGAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAACTTATACAAGTAGAATGTGCAGAGCTGTAGAGTGAGAGCAG  526

seq1  TTTTGTTTTAAAACACGAAAGGTTGAATGTGGCCTTTTAAAATTAGAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTAAAACACGAAAGGTTGAATGTGGCCTTTTAAAATTAGAATG  576

seq1  TAATCATTTATATATACACTTATAAAACCTGTTATCAGTATCTCAAATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTATATATACACTTATAAAACCTGTTATCAGTATCTCAAATCA  626

seq1  TTACTGTGTTCAATTTTAGTTAAAAACACTAAATTTTCATACCAGATGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTTCAATTTTAGTTAAAAACACTAAATTTTCATACCAGATGAT  676

seq1  GAAACATAAGGTTATATAATAAAAGTAAAAGAAGCAGTGTTTTTACTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATAAGGTTATATAATAAAAGTAAAAGAAGCAGTGTTTTTACTTAA  726

seq1  GGCATTAGGGCATAGGATTATTAACTGACCTCTTCTGGTAATCAAAACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGGGCATAGGATTATTAACTGACCTCTTCTGGTAATCAAAACCT  776

seq1  CAAATTTTATCCTAAAAGAAAGTATGAGGCATTATTAAATCTTTTGTTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTATCCTAAAAGAAAGTATGAGGCATTATTAAATCTTTTGTTAC  826

seq1  TCACATACTTTCTTCACCTTTAATAGGTATGTGATTTTGTGAGTCACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACTTTCTTCACCTTTAATAGGTATGTGATTTTGTGAGTCACACA  876

seq1  TGAATTTATAGTGCATTAAATCTGAAATGCTTAGAAATACAATCTTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTATAGTGCATTAAATCTGAAATGCTTAGAAATACAATCTTTTTT  926

seq1  AATAGAACATATATAGAAAAATATACACTACCATATGTAGGATGATGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACATATATAGAAAAATATACACTACCATATGTAGGATGATGAAA  976

seq1  GAAAGACTATGTAATCCAGAAAAAAAAATCTTTTTTTTAATCAGCATAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTATGTAATCCAGAAAAAAAAATCTTTTTTTTAATCAGCATAAT  1026

seq1  TTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATTTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATTTTA  1076

seq1  CAGTTTAACCTGTCAAGTGAGTTTAAAGTGATTCTACATTTGCAAGTTAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAACCTGTCAAGTGAGTTTAAAGTGATTCTACATTTGCAAGTTAG  1126

seq1  ATGACATAAAAACAGAAATGTGAATTC  1176
      |||||||||||||||||||||||||||
seq2  ATGACATAAAAACAGAAATGTGAATTC  1153