BAC Information

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BAC

Clone NameB6Ng01-039E17
Chromosome4 (Build37)
Map Location 77,646,676 - 77,755,513
singlet/doubletdoublet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996, LOC100040026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E17.bB6Ng01-039E17.g
ACCDH866601DH866602
length9021,083
definitionDH866601|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E17, 5' end.DH866602|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,646,676 - 77,647,493)(77,754,426 - 77,755,513)
sequence
gaattcaaaacacaaattaaaaatggcacagagagttctttaaattatgg
aacaactttgtccatagggaaactttatattgaaactgtttgaaatttca
tcttagcctcatcaaggattcaaatgacaaaaattactggattttgtgaa
gaaaaatggaagcacttatgtactgttggtgagagtgtaaactgatacat
tcaccatagaaataactgtggagattcataaatgaactactatagcctag
ccatatccctgggcatattatgaaggtagagattactacaaagataattc
ctattcatgttcattgctgcctaaagtcaataaacaaaagtcctgtacat
attttttaacaaatggaaaaggaaaatgaggtacacattcatagcaaaat
tatattcagctctgaagacaagtgaaatattatatttgcaagaaatgact
agagttataaataattatgctcactgaagtaacatagatccaaaaagaaa
atgctcacatgttttcttttatatgtacattctagctttaaatatttaga
tacatatatcatgcccacagcaactcacagaagactgacagtaggttata
caagatctatataagatttatacaagatcaagccaaagttcacagcaggg
ataaggggtaactttataaaactataccctgatctgagatgtgtttgtaa
tcaatgcacttttaagatagttttcttcaagagtctaactccttgctagg
ctacttatactcaagtgaatagtcctccttccatgcattttctagttgta
caaagtgatcccagtaggtttagaaaggaatatataataatatgtaaaag
tataatatatatatatatatatatatatatatatatatatactgggaggg
aa
gaattctgtcctttgaatcatgaactaacataacactttgcttcttattc
ttatcaggtatttggtcacaacataagaaaattaaccaggactacttaaa
tctacacaagtatataaattacaataaaatcatcaatcacatggtattta
tgtaattgcttccagggaggcatgggaagaatatatatgtgttgatttta
aaagtctgtgatcacatgccatgtatcataattattgtttttataattag
aaagcttatgcatgcattaatttgtatcatatcactgaaaaaaacataat
catgagattttcctttcaaaatagactcattctaaataataaaaccagat
caacaaagtgcaagccaaaaccaaaacaataaagtatctatgacctgttt
gtcaatcatgcatctccaaattttattctcgtaaacagatataagattaa
ccctgtcaatctttttttgtgttttgttttgttttgttttgttttttgtt
tcttgttttttgttttattaattaattaattaattaatttatttttgttt
tttgagacagggtttttctctagaactcactctgtagaccaagctggcct
cgaactcagaactccacctgcctctgcctccaaagtgctgggattaaagg
catgcatcaccactgccagacttctttcaattaaataaattgccaaccta
tgcatgggtagatgaatatatatctgcaaattttcacagtattctatata
gttgtgtgcttaaaatcaaatgaaaactcccaggtgtgaggtagatagtc
atgaagccacatgctaattaaaaaaacaaaagtttatttatcaaattgtt
ttcattttttgaagggataaatcttgctatttaaatgaggttgatcgtga
tggtggtacagctaaagatagatttgttatttagagagtaagttgttgat
gcatttgttaaaataataagtcacacatattttaaattaagggatagtca
tatcacactctggaaggagacaataaaattatcttaaaacacttggaaac
attagaagaaggcatcttcaattattttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77646676_77647493
seq2: B6Ng01-039E17.b_131_947

seq1  CTGTTTGAAATTTCATCTTAGCCTCATCAAGGATTCAAATGACAAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAAATTTCATCTTAGCCTCATCAAGGATTCAAATGACAAAAATT  50

seq1  ACTGGATTTTGTGAAGAAAAATGGAAGCACTTATGTACTGTTGGTGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTTTGTGAAGAAAAATGGAAGCACTTATGTACTGTTGGTGAGAG  100

seq1  TGTAAACTGATACATTCACCATAGAAATAACTGTGGAGATTCATAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTGATACATTCACCATAGAAATAACTGTGGAGATTCATAAATGA  150

seq1  ACTACTATAGCCTAGCCATATCCCTGGGCATATTATGAAGGTAGAGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATAGCCTAGCCATATCCCTGGGCATATTATGAAGGTAGAGATTA  200

seq1  CTACAAAGATAATTCCTATTCATGTTCATTGCTGCCTAAAGTCAATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGATAATTCCTATTCATGTTCATTGCTGCCTAAAGTCAATAAAC  250

seq1  AAAAGTCCTGTACATATTTTTTAACAAATGGAAAAGGAAAATGAGGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCTGTACATATTTTTTAACAAATGGAAAAGGAAAATGAGGTACA  300

seq1  CATTCATAGCAAAATTATATTCAGCTCTGAAGACAAGTGAAATATTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATAGCAAAATTATATTCAGCTCTGAAGACAAGTGAAATATTATAT  350

seq1  TTGCAAGAAATGACTAGAGTTATAAATAATTATGCTCACTGAAGTAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGAAATGACTAGAGTTATAAATAATTATGCTCACTGAAGTAACAT  400

seq1  AGATCCAAAAAGAAAATGCTCACATGTTTTCTTTTATATGTACATTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAAAAGAAAATGCTCACATGTTTTCTTTTATATGTACATTCTAG  450

seq1  CTTTAAATATTTAGATACATATATCATGCCCACAGCAACTCACAGAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATATTTAGATACATATATCATGCCCACAGCAACTCACAGAAGAC  500

seq1  TGACAGTAGGTTATACAAGATCTATATAAGATTTATACAAGATCAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAGGTTATACAAGATCTATATAAGATTTATACAAGATCAAGCCA  550

seq1  AAGTTCACAGCAGGGATAAGGGGTAACTTTATAAAACTATACCCTGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACAGCAGGGATAAGGGGTAACTTTATAAAACTATACCCTGATCT  600

seq1  GAGATGTGTTTGTAATCAATGCACTTTTAAGATAGTTTTCTTCAAGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGTTTGTAATCAATGCACTTTTAAGATAGTTTTCTTCAAGAGTC  650

seq1  TAACTCCTTGCTAGGCTACTTATACTCAAGTGAATAGTCCTCCTTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTTGCTAGGCTACTTATACTCAAGTGAATAGTCCTCCTTCCATG  700

seq1  CATTTTCTAGTTGTACAAAGTGATCCCAGTAGGTTTAGAAAGGAATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTAGTTGTACAAAGTGATCCCAGTAGGTTTAGAAAGGAATATAT  750

seq1  AATAATATGTAAAAGGTATAATATATATATATATATATATATATATATAT  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAATATGTAAAA-GTATAATATATATATATATATATATATATATATAT  799

seq1  ATATATACTGGGAGGGAA  818
      ||||||||||||||||||
seq2  ATATATACTGGGAGGGAA  817

seq1: chr4_77754426_77755513
seq2: B6Ng01-039E17.g_65_1147 (reverse)

seq1  AAAAGAAAAATAATTTGAAGATGGCCTTC-TCTAATGTTTCAAAGTGTTT  49
      ||||| ||||||| |||||||| |||||| ||||||||||| ||||||||
seq2  AAAAG-AAAATAA-TTGAAGAT-GCCTTCTTCTAATGTTTCCAAGTGTTT  47

seq1  TAAGATAATTTTATTGTCT-CTTCCAGAGGTGGTGATATGACTATCCCTT  98
      ||||||||||||||||||| |||||||||   ||||||||||||||||||
seq2  TAAGATAATTTTATTGTCTCCTTCCAGAG--TGTGATATGACTATCCCTT  95

seq1  TATTT-AAATATGTGTGACTTATTTATTTTAACATATTGCATCAACAACT  147
       |||| |||||||||||||||| ||||||||||| | |||||||||||||
seq2  AATTTAAAATATGTGTGACTTA-TTATTTTAACA-AATGCATCAACAACT  143

seq1  TACTCTCTAAATAACAAATTCTATCTATAGCTGTACCACCATCACGATCA  197
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TACTCTCTAAATAACAAA-TCTATCTTTAGCTGTACCACCATCACGATCA  192

seq1  ACCTCATTTAAATAGCAAGATTTATCCCTTCAAAAAATGAAAACAATTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTTAAATAGCAAGATTTATCCCTTCAAAAAATGAAAACAATTTG  242

seq1  ATAAATAAACTTTTGTTTTTTTAATTAGCATGTGGCTTCATGACTATCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAACTTTTGTTTTTTTAATTAGCATGTGGCTTCATGACTATCTA  292

seq1  CCTCACACCTGGGAGTTTTCATTTGATTTTAAGCACACAACTATATAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACCTGGGAGTTTTCATTTGATTTTAAGCACACAACTATATAGAA  342

seq1  TACTGTGAAAATTTGCAGATATATATTCATCTACCCATGCATAGGTTGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAAAATTTGCAGATATATATTCATCTACCCATGCATAGGTTGGC  392

seq1  AATTTATTTAATTGAAAGAAGTCTGGCAGTGGTGATGCATGCCTTTAATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTAATTGAAAGAAGTCTGGCAGTGGTGATGCATGCCTTTAATC  442

seq1  CCAGCACTTTGGAGGCAGAGGCAGGTGGAGTTCTGAGTTCGAGGCCAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTTGGAGGCAGAGGCAGGTGGAGTTCTGAGTTCGAGGCCAGCT  492

seq1  TGGTCTACAGAGTGAGTTCTAGAGAAAAACCCTGTCTCAAAAAACAAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCTAGAGAAAAACCCTGTCTCAAAAAACAAAAA  542

seq1  TAAATTAATTAATTAATTAATTAATAAAACAAAAAACAAGAAACAAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATTAATTAATTAATTAATAAAACAAAAAACAAGAAACAAAAAA  592

seq1  CAAAACAAAACAAAACAAAACACAAAAAAAGATTGACAGGGTTAATCTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAACACAAAAAAAGATTGACAGGGTTAATCTTA  642

seq1  TATCTGTTTACGAGAATAAAATTTGGAGATGCATGATTGACAAACAGGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTACGAGAATAAAATTTGGAGATGCATGATTGACAAACAGGTC  692

seq1  ATAGATACTTTATTGTTTTGGTTTTGGCTTGCACTTTGTTGATCTGGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACTTTATTGTTTTGGTTTTGGCTTGCACTTTGTTGATCTGGTTT  742

seq1  TATTATTTAGAATGAGTCTATTTTGAAAGGAAAATCTCATGATTATGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAGAATGAGTCTATTTTGAAAGGAAAATCTCATGATTATGTTT  792

seq1  TTTTCAGTGATATGATACAAATTAATGCATGCATAAGCTTTCTAATTATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGATATGATACAAATTAATGCATGCATAAGCTTTCTAATTATA  842

seq1  AAAACAATAATTATGATACATGGCATGTGATCACAGACTTTTAAAATCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAATTATGATACATGGCATGTGATCACAGACTTTTAAAATCAA  892

seq1  CACATATATATTCTTCCCATGCCTCCCTGGAAGCAATTACATAAATACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATATTCTTCCCATGCCTCCCTGGAAGCAATTACATAAATACCA  942

seq1  TGTGATTGATGATTTTATTGTAATTTATATACTTGTGTAGATTTAAGTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGATGATTTTATTGTAATTTATATACTTGTGTAGATTTAAGTAG  992

seq1  TCCTGGTTAATTTTCTTATGTTGTGACCAAATACCTGATAAGAATAAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTAATTTTCTTATGTTGTGACCAAATACCTGATAAGAATAAGAA  1042

seq1  GCAAAGTGTTATGTTAGTTCATGATTCAAAGGACAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGTTATGTTAGTTCATGATTCAAAGGACAGAATTC  1083