BAC Information

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BAC

Clone NameB6Ng01-039L18
Chromosome4 (Build37)
Map Location 25,246,684 - 25,247,810
singlet/doubletsinglet
Overlap genenone
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2
Downstream geneLOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039L18.bB6Ng01-039L18.g
ACCDH866917DH866918
length1,2941,123
definitionDH866917|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L18, 5' end.DH866918|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttacattaaaattttatattatatattaaaataacatgctataa
aattataatctgtgtgtgttacccttatttccgtgtatttagggtttgtc
ctttaggattaaggtcttatctgtggaacaaagaaaacagtatagatctc
ttcagcaatggttgacaatggatgtcgaacagaagagaaagagtgcttat
aacacaaccactcatcaggatacatccaagaaacaccatagacttacctc
accctggcttctgaatctatttggtttttcaaaggacgtaacacttttct
tgctgttctttaaagaaaccattcataccagacttaatagttctgaaaca
catacatgaatatgtttctgtctctctaaagccagaagaaagagcaaaga
aattgcaaacagaatgtggatcactaacaatgagtatacagaatcttgct
tatagaaagattaaagggataaacggaaccccaaaggctcatgctctaag
atcaagaattgataaatggaacctcatgaaactgaaaagcttctgtaagg
caaaggacatagtcaataagacaaatcagaaacctacagattggggaaaa
aaatcttcattaaccccacatccaatagagggttaatatccaaaatatat
aaagaactcaagaagttactcaccaaaaatccaaacaacccaatcaaaaa
atgggatattgaactagactaagaaatcacaactgaagaatctcgaatgg
gtgagaaacacctaaagaaatgttcaaaaagtccctagtgatcagagaaa
tgcaaatcaaaatgaccctgaaattccaccttacatcaatcagaatggct
aagatcaaaacctcatttgacaatgaatgttggagaggatgtggagaaag
aagaacacccctccattgctggtgtgattgcaaactgatacaaccattct
ggaaatcaatctggaggtttctcagaattggaaatagatctacctgagac
ccagctataccactcttagtatatacccaaagatgccccaccatcccaca
gggcatgaagttccactatgttccgaggcagactaatttgtggatagcta
gaagttgggaacaacctagatgttccacacagaagaatggaatacagaaa
tgtgtcatttacacgtgggaatctactccagctatttaagtggagacatc
tgattgcaggcaatggatggactgaaaattatctgagtgaggaactcgac
caaggcactctctgttgttcccctaattagatggaaaatatggc
gaattcctgcctaggactgtaaaacctagccgattacctgtggctgtaga
tgatgacatagaccctgaggagaacttaacttttgctattttcctaagtc
aacaatgtttctaactgaaccattaaaaaatatctacaatatttgtttct
ggcaaactgtcatttcagtcatgtgtgacgtcctttatccttcattcttc
acacgatatcctttccacagtctaatggtctctgcctatctgctcatatt
ctagatccaagcagtaaaagttggctggaagttgtttttgaatggaagct
gggctgttatttggcagctttgttgtagtatgaccagctgggaagtttca
ctgtgaaactagtgaaaaggacattaggtccttcctttcattgatgaaaa
caatgctcaggtttcaggtttccaggttatttatttatttatctacttat
atttctttcttcccctttccctttatttgattaattttgttttgaacaca
cacacacacacacacacacacacacacacacacacacacttcattcttat
tcctctttcctatacactttctcactttctcttatctttcccatctcttc
catctttgccttccatctctactagtctccttcccaggttcatgactttt
gtgttattgtaaaccaggttaaccagggtcaactctgtgacccttggatt
ggaactatccattgaagccagatggggtcatcagaggatatacacctgca
ggtaatgatggccccttccctgaatctatcagttgcaaatagttcagcag
tgggagttagggactcctgcactatttcatcttgactgttaattggcttg
ttattgtgcacactcaatgaacacatctttagctgctgtgagcctgtgtg
aacttatgattgtatcatgcttggaaatgacactttaaagtgcttttaat
tttttggttttaagtttttgtaaaacctcttctgccatgcagtaattttt
gagtcctcaaaggggatgggataaatgactgtataagaaataacacttat
ccatccattattctcagccagccttgtttctccatgaatccttgtataac
tcatcactggaaagaggcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25246684_25247810
seq2: B6Ng01-039L18.g_64_1186

seq1  GAATTCCTGCCTAGGACTGTAAAACCTAGCCGATTACCTGTGGCTGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTAGGACTGTAAAACCTAGCCGATTACCTGTGGCTGTAGA  50

seq1  TGATGACATAGACCCTGAGGAGAACTTAACTTTTGCTATTTTCCTAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACATAGACCCTGAGGAGAACTTAACTTTTGCTATTTTCCTAAGTC  100

seq1  AACAATGTTTCTAACTGAACCATTAAAAAATATCTACAATATTTGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTTTCTAACTGAACCATTAAAAAATATCTACAATATTTGTTTCT  150

seq1  GGCAAACTGTCATTTCAGTCATGTGTGACGTCCTTTATCCTTCATTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACTGTCATTTCAGTCATGTGTGACGTCCTTTATCCTTCATTCTTC  200

seq1  ACACGATATCCTTTCCACAGTCTAATGGTCTCTGCCTATCTGCTCATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGATATCCTTTCCACAGTCTAATGGTCTCTGCCTATCTGCTCATATT  250

seq1  CTAGATCCAAGCAGTAAAAGTTGGCTGGAAGTTGTTTTTGAATGGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCCAAGCAGTAAAAGTTGGCTGGAAGTTGTTTTTGAATGGAAGCT  300

seq1  GGGCTGTTATTTGGCAGCTTTGTTGTAGTATGACCAGCTGGGAAGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTATTTGGCAGCTTTGTTGTAGTATGACCAGCTGGGAAGTTTCA  350

seq1  CTGTGAAACTAGTGAAAAGGACATTAGGTCCTTCCTTTCATTGATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAACTAGTGAAAAGGACATTAGGTCCTTCCTTTCATTGATGAAAA  400

seq1  CAATGCTCAGGTTTCAGGTTTCCAGGTTATTTATTTATTTATCTACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCAGGTTTCAGGTTTCCAGGTTATTTATTTATTTATCTACTTAT  450

seq1  ATTTCTTTCTTCCCCTTTCCCTTTATTTGATTAATTTTGTTTTGAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCTTCCCCTTTCCCTTTATTTGATTAATTTTGTTTTGAACACA  500

seq1  CACACACACACACACACACACACACACACACACACACACTTCATTCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACTTCATTCTTAT  550

seq1  TCCTCTTTCCTATACACTTTCTCACTTTCTCTTATCTTTCCCATCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCCTATACACTTTCTCACTTTCTCTTATCTTTCCCATCTCTTC  600

seq1  CATCTTTGCCTTCCATCTCTACTAGTCTCCTTCCCAGGTTCATGACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGCCTTCCATCTCTACTAGTCTCCTTCCCAGGTTCATGACTTTT  650

seq1  GTGTTATTGTAAACCAGGTTAACCAGGGTCAACTCTGTGACCCTTGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTGTAAACCAGGTTAACCAGGGTCAACTCTGTGACCCTTGGATT  700

seq1  GGAACTATCCATTGAAGCCAGATGGGGTCATCAGAGGATATACACCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTATCCATTGAAGCCAGATGGGGTCATCAGAGGATATACACCTGCA  750

seq1  GGTAATGATGGCCCCTTCCCTGAATCTATCAGTTGCAAATAGTTCAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGATGGCCCCTTCCCTGAATCTATCAGTTGCAAATAGTTCAGCAG  800

seq1  TGGGAGTTAGGGACTCCTGCACTATTTCATCTTGACTGTTAATTGGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTAGGGACTCCTGCACTATTTCATCTTGACTGTTAATTGGCTTG  850

seq1  TTATTGTGCACACTCAATGAACACATCTTTAGCTGCTGTGAGCCTGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGCACACTCAATGAACACATCTTTAGCTGCTGTGAGCCTGTGTG  900

seq1  AACTTATGATTGTATCATGCTTGGAAATGACACTTTAAAGTGCTTTTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGATTGTATCATGCTTGGAAATGACACTTTAAAGTGCTTTTAAT  950

seq1  TTTTTGGCTTTTAAGTTTTTGTAAAACCTCTTCTGCCATGCAGTAATTTT  1000
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTTGG-TTTTAAGTTTTTGTAAAACCTCTTCTGCCATGCAGTAA-TTT  998

seq1  TTGAGT-CTCAAAGGGGATGGGATAAATGACTTGTATAGGAATTAACACT  1049
      |||||| |||||||||||||||||||||||| |||||| ||| |||||||
seq2  TTGAGTCCTCAAAGGGGATGGGATAAATGAC-TGTATAAGAAATAACACT  1047

seq1  TATCCATCATTTATTCTCAGC--ATCTTGTTTCCTCATGAATCTCTGTAT  1097
      ||||||||  |||||||||||    ||||||||  ||||||||  |||| 
seq2  TATCCATCCATTATTCTCAGCCAGCCTTGTTTCTCCATGAATCCTTGTA-  1096

seq1  TAACTTCCATTCACTGGAAAGAGGCTTCTC  1127
      |||||  || ||||||||||||||||||||
seq2  TAACT--CA-TCACTGGAAAGAGGCTTCTC  1123