BAC Information

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BAC

Clone NameB6Ng01-041F10
Chromosome6 (Build37)4 (Build37)
Map Location 85,607,529 - 85,608,09526,870,970 - 26,871,462
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F10.bB6Ng01-041F10.g
ACCDH868029DH868030
length988487
definitionDH868029|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F10, 5' end.DH868030|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,607,529 - 85,608,095)(26,870,970 - 26,871,462)
sequence
gaattctgttgctgatgctcacatctatggttctagatttctttcctatg
gtttctatctccagcattgcctcacttagggttttctttattgtgtctac
ttccctttttaggtcttgtatggttttgttcaattccatcacctgtttgg
ttgtgttttcctgtttttctttaaggacttgtacctctttagcagtgttc
tcctttatttctttaagtgagttattaaagtccttcttgatgtcctctac
catcatcatgagatatgcttttaaatccgggtctaggttttcgggtgtgt
tgtggtatccaggactggctgacatgggagtactgggttctgatgatggt
gagtggtcttggtttctgttagtaagattcttatgtttgcatctagccat
ctggtaatcgctggagttagttgttatagttgtctctgtttagagcttgt
tccttccatgactctgttagcctctatcagcagacctgggagactagatc
tctcctgagtttcagtggtaaaagtactctctgcaggtaagctctccact
tgcagggaaggtgcccagatatcttgcctttggagcagcctcctaacaga
agatgtgtgcctgaaacaaggcctatcccagaagctgtgccacttctgtc
tgttccagatgctgtgcagcttctgtagtcagcactctcacctatacagt
ctagtctctgagagatccaggccagagatggctccctcaggtactccagc
aaagccctctatggtggggcagacacctctcctctggcagggaaggtacc
cagatatctggagcccaaaatggggtcttccccagaagctgtgtggcctc
tgcccatcccagaagatgtcagctctgtagtccacactctcacctgtgca
gaccagtctctagggatctgggaaacaagatggctccccaggtgctcagc
aaagccaggaaagtttttgtcacttacagaatagaagc
atggcagtacactttgttgagtttacatttgttttactgggacagtttca
cagagactggtttcagacaaaacaagctagacatagatgaaaacagaatg
agcagagaatgggaaagagttccaatccagaagactggaacagattgcca
gagttagtttgaggtcaagaagagcaattcaagagaaactgagagaaatc
agtttgaatcagtcagtttgaaaaggaattttaaaccagaacatctaagt
tgaaccagctagccaaggttcagaaagagcaagaataattgaggttttgt
tttttgttttgttttgtttgtttgtttgttttttgtttttctggtttttt
tttgtttttttgtttgtttgtttgtttgtttgtttgttttctaagctgta
atccttataagccaattacttctgccaaataaagaatactttatttggag
gaatgtgaaattttggattttgaattagaaaatcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85607529_85608095
seq2: B6Ng01-041F10.b_48_592 (reverse)

seq1  GGAGAGCTTGCCTGCAGAGACTGCTCTGACCACTGAAACTCAGAGGAGAG  50
      ||||||||| |||||||||| | || | |||||||||||||  |||||||
seq2  GGAGAGCTTACCTGCAGAGAGTACTTTTACCACTGAAACTC--AGGAGAG  48

seq1  AGCTAGTCTCCCAGTTCTGCTGATAGAGGGTAACAAAACCACCAGAGGAA  100
      | |||||||||||| |||||||||||||| ||||| |  ||    |||||
seq2  ATCTAGTCTCCCAGGTCTGCTGATAGAGGCTAACAGAGTCATGGAAGGAA  98

seq1  CAATCTCTAAACAGAGACAACTATAACAACTAACTCCAGAGATTACCAGA  150
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAAGCTCTAAACAGAGACAACTATAACAACTAACTCCAGCGATTACCAGA  148

seq1  TGGTGAAAGGTAAACGTAATAATCTTACTAACAGAAATCAAGACCACTCA  200
      |||  | | | |||| ||| ||||||||||||||||| ||||||||||||
seq2  TGGCTAGATGCAAACATAAGAATCTTACTAACAGAAACCAAGACCACTCA  198

seq1  CCATCATCAGAACCCAGCACTCCCACTTCGCCCAGTCCAGGGCACCCCAA  250
      ||||||||||||||||| |||||||  ||  ||||||| ||  ||| |||
seq2  CCATCATCAGAACCCAGTACTCCCATGTCAGCCAGTCCTGGATACCACAA  248

seq1  CACACCCGAAAAACTAGACCCAGATTTAAAAGCATATCTCATGATGATGG  300
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  CACACCCGAAAACCTAGACCCGGATTTAAAAGCATATCTCATGATGATGG  298

seq1  TAGAGGACATCAAGAAGGACTTAAATAACTCACTTAAAGATATACAGGAG  350
      |||||||||||||||||||||| ||||||||||||||||| ||| |||||
seq2  TAGAGGACATCAAGAAGGACTTTAATAACTCACTTAAAGAAATAAAGGAG  348

seq1  AACACTGCTAAACAGGTAGAAGACATTAAAGAGGAAGCACAAAAATCCCT  400
      |||||||||||| ||||| ||| | ||||||         |||||     
seq2  AACACTGCTAAAGAGGTACAAGTCCTTAAAG---------AAAAA-----  384

seq1  TAAAGAATTGCAGGAAAACACAACTAAACAGGTGATGGAATTGAATAAAA  450
                |||||||||||||| |||||||||||||||||||| ||||
seq2  ----------CAGGAAAACACAACCAAACAGGTGATGGAATTGAACAAAA  424

seq1  CCATCCAAGACCTAAAAAGGGAAGTAGACACAAT----AAAACCCAAAGT  496
      |||| |||||||||||||||||||||||||||||    ||||||| ||||
seq2  CCATACAAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCTAAGT  474

seq1  GAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAAACATAGA  546
      ||||||| |||||||||||||||| |||||||||||||| ||| ||||||
seq2  GAGGCAATGCTGGAGATAGAAACCATAGGAAAGAAATCTAGAACCATAGA  524

seq1  TGCGAGCATCAGCAACAGAAT  567
      || ||||||||||||||||||
seq2  TGTGAGCATCAGCAACAGAAT  545

seq1: chr4_26870970_26871462
seq2: B6Ng01-041F10.g_67_559 (reverse)

seq1  ACTGATTTTCTAATTCAAAATCCAAAATTTCACATTCCTCCAAATAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTCTAATTCAAAATCCAAAATTTCACATTCCTCCAAATAAAGT  50

seq1  ATTCTTTATTTGGCTGAAGTAATTGGCTTATAAGGATTACAGCTTAAAAA  100
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  ATTCTTTATTTGGCAGAAGTAATTGGCTTATAAGGATTACAGCTTAGAAA  100

seq1  ACAAACAAACAAACAAACAAACAAACAAAAAAACAAAAAAAAACCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAACAAAAAAACAAAAAAAAACCAGAAA  150

seq1  AACAAAAAACAAACAAACAAACAAAACAAAACAAAAAACAAAACCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAAACAAACAAACAAAACAAAACAAAAAACAAAACCTCAAT  200

seq1  TATTCTTGCTCTTTCTGAACCTTGGCTAGCTGGTTCAACTTAGATGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGCTCTTTCTGAACCTTGGCTAGCTGGTTCAACTTAGATGTTCT  250

seq1  GGTTTAAAATTCCTTTTCAAACTGACTGATTCAAACTGATTTCTCTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAATTCCTTTTCAAACTGACTGATTCAAACTGATTTCTCTCAGT  300

seq1  TTCTCTTGAATTGCTCTTCTTGACCTCAAACTAACTCTGGCAATCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGAATTGCTCTTCTTGACCTCAAACTAACTCTGGCAATCTGTTC  350

seq1  CAGTCTTCTGGATTGGAACTCTTTCCCATTCTCTGCTCATTCTGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCTGGATTGGAACTCTTTCCCATTCTCTGCTCATTCTGTTTTCA  400

seq1  TCTATGTCTAGCTTGTTTTGTCTGAAACCAGTCTCTGTGAAACTGTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCTAGCTTGTTTTGTCTGAAACCAGTCTCTGTGAAACTGTCCCA  450

seq1  GTAAAACAAATGTAAACTCAACAAAGTGTACTGCCATGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAAATGTAAACTCAACAAAGTGTACTGCCATGAATTC  493